View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1154_low_8 (Length: 423)
Name: NF1154_low_8
Description: NF1154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1154_low_8 |
 | |
|
| [»] chr7 (15 HSPs) |
| |
|
| [»] scaffold0289 (2 HSPs) |
| | |
|
| [»] scaffold0400 (2 HSPs) |
| | |
|
| [»] scaffold0365 (2 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 365; Significance: 0; HSPs: 15)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 31 - 423
Target Start/End: Complemental strand, 31184736 - 31184344
Alignment:
| Q |
31 |
tataagagaggaaaaggaaatggttctaacctggagctgcataccctagagttcctgcaaaattggtcccattagtttcatcaggctttagaaacttagc |
130 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
31184736 |
tataagagaggaaaaggaaatggttctaacctggagctgcataccctagagttcctgcaaaatgggtccgattagtctcatcaggctttagaaacttagc |
31184637 |
T |
|
| Q |
131 |
gatcccgaagtcggagacatgagcttcatagtcaagattgattagaacatttttacttgatatatcacgatgaacaataggaggtgagcaatcgtgatgc |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31184636 |
gatcccgaagtcggagacatgagcttcatagtcaagattgataagaacatttttactcgatatatcacgatgaacaataggaggtgagcaatcgtgatgc |
31184537 |
T |
|
| Q |
231 |
aagtaggacaaagcattggcaacacctttaacaacattcaccctcttttcccaatcaaatgcaatggcttgtttttcattgtttagtatttgatctaagc |
330 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31184536 |
aagtaggacaaagcattggcgacacctttaacaacattcaccctcttttcccaatcaaatgcaatggcttgtttttcattgtttattatttgatctaagc |
31184437 |
T |
|
| Q |
331 |
ttccaccttccatgaacttgtaaaccaaaaatgagaacttagaatgttggcaatatccttgaaggttgatgatgttcctgtgtttgattcctc |
423 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31184436 |
ttccaccttccatgaacttgtaaaccaaaaatgagaacttagaatgttggcaatatccttgaaggttgatgatgttcctgtgtttgattcctc |
31184344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 47 - 422
Target Start/End: Complemental strand, 31103640 - 31103265
Alignment:
| Q |
47 |
gaaatggttctaacctggagctgcataccctagagttcctgcaaaattggtcccattagtttcatcaggctttagaaacttagcgatcccgaagtcggag |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||| |||||||| | |||| | || | |||||||| ||||||||||| |||| ||||||||| |
|
|
| T |
31103640 |
gaaatggttctaacctggagctgcatacccaaaagtgcctgcaaattgtgtccaactatgtaagtcaggcttaagaaacttagctgtcccaaagtcggag |
31103541 |
T |
|
| Q |
147 |
acatgagcttcatagtcaagattgattagaacatttttacttgatatatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcat |
246 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||| || || |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
31103540 |
acatgagcttcatagtcaagattgagaagaatattcttgctcgatatatcacgatgaataataggaggtgagcaatcatgatgcaagtaggacaaagcat |
31103441 |
T |
|
| Q |
247 |
tggcaacacctttaacaacattcaccctcttttcccaatcaaatgcaatggcttgtttttcattgtttagtatttgatctaagcttccaccttccatgaa |
346 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31103440 |
tggcgacacctttaacaacattcaccctcttttcccaatcaaatgcaatggcttgtttttcattgtttagtatttgatctaagcttccaccttccatgaa |
31103341 |
T |
|
| Q |
347 |
cttgtaaaccaaaaatgagaacttagaatgttggcaatatccttgaaggttgatgatgttcctgtgtttgattcct |
422 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||| |||| ||||| || ||||| |||||||||||||||||| |
|
|
| T |
31103340 |
cttgtaaactaaaaatgagaacttagaatgtgagcaaaatccatgaagctttatgatattcctgtgtttgattcct |
31103265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 46 - 422
Target Start/End: Complemental strand, 31059197 - 31058821
Alignment:
| Q |
46 |
ggaaatggttctaacctggagctgcataccctagagttcctgcaaaattggtcccattagtttcatcaggctttagaaacttagcgatcccgaagtcgga |
145 |
Q |
| |
|
|||||||| |||||||||||||||||||||| | ||| |||||||| | |||| | || | ||||||||| ||||||||| ||||||||||||| |
|
|
| T |
31059197 |
ggaaatggatctaacctggagctgcatacccaaaagtgcctgcaaattgtgtccaactatgtaggccaggctttaaaaacttagctgtcccgaagtcgga |
31059098 |
T |
|
| Q |
146 |
gacatgagcttcatagtcaagattgattagaacatttttacttgatatatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagca |
245 |
Q |
| |
|
||||||||||||||||||||||| | |||||||| || ||||||||||| ||||||| |||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
31059097 |
aacatgagcttcatagtcaagattaagaagaacattcttgcttgatatatcgcgatgaattataggaggcgagcaatcatgatgcaagtaggacaaagca |
31058998 |
T |
|
| Q |
246 |
ttggcaacacctttaacaacattcaccctcttttcccaatcaaatgcaatggcttgtttttcattgtttagtatttgatctaagcttccaccttccatga |
345 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
31058997 |
ttggccacacctttaacaacattcaccctcttttcccaatcaaatgcaacggcttgtgtgtcattgtttagtatttgatctaagcttccaccttccaaga |
31058898 |
T |
|
| Q |
346 |
acttgtaaaccaaaaatgagaacttagaatgttggcaatatccttgaaggttgatgatgttcctgtgtttgattcct |
422 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||| |||| |||| ||||| || ||||||||||| ||||| |||||| |
|
|
| T |
31058897 |
acttgtaaaccaaaaacgagaatttagaatgtgagcaaaatccatgaagttttatgatgttcctatgtttaattcct |
31058821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 46 - 422
Target Start/End: Complemental strand, 31141000 - 31140624
Alignment:
| Q |
46 |
ggaaatggttctaacctggagctgcataccctagagttcctgcaaaattggtcccattagtttcatcaggctttagaaacttagcgatcccgaagtcgga |
145 |
Q |
| |
|
|||||||| |||||||||||||||||||||| | ||| |||||||| | ||||| | || | | | ||||||||||||||||| | || |||||||| |
|
|
| T |
31141000 |
ggaaatggatctaacctggagctgcatacccaaaagtgcctgcaaattgggtccaactaagtaaacctggctttagaaacttagccgttccaaagtcgga |
31140901 |
T |
|
| Q |
146 |
gacatgagcttcatagtcaagattgattagaacatttttacttgatatatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagca |
245 |
Q |
| |
|
||| |||||||||||||||||||| | || ||||| || ||||||||||||||||||| ||||||||| || ||||| ||||||||||||||||||||| |
|
|
| T |
31140900 |
gacttgagcttcatagtcaagattaagaaggacattcttgcttgatatatcacgatgaataataggaggagaacaatcatgatgcaagtaggacaaagca |
31140801 |
T |
|
| Q |
246 |
ttggcaacacctttaacaacattcaccctcttttcccaatcaaatgcaatggcttgtttttcattgtttagtatttgatctaagcttccaccttccatga |
345 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| | ||| ||||||| |||||| |||||||||| ||||||| || |
|
|
| T |
31140800 |
ttggccacacctttaacaacattcaccctcttttcccaatcaaatgcagtggcttgtgtatcactgtttagcatttgacctaagcttcctccttccaaga |
31140701 |
T |
|
| Q |
346 |
acttgtaaaccaaaaatgagaacttagaatgttggcaatatccttgaaggttgatgatgttcctgtgtttgattcct |
422 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||| |||| ||||| || ||||||||||||||| |||||||| |
|
|
| T |
31140700 |
acttgtaaaccaaaaatgagaatttagaatgtgagcaaaatccatgaagctttatgatgttcctgtgtctgattcct |
31140624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 46 - 333
Target Start/End: Complemental strand, 31159832 - 31159545
Alignment:
| Q |
46 |
ggaaatggttctaacctggagctgcataccctagagttcctgcaaaattggtcccattagtttcatcaggctttagaaacttagcgatcccgaagtcgga |
145 |
Q |
| |
|
|||||||| |||||||||||||||||||||| | ||| |||||||| | ||||| | || | | | ||||||||||||||||| | || |||||||| |
|
|
| T |
31159832 |
ggaaatggatctaacctggagctgcatacccaaaagtgcctgcaaattgggtccaactaagtaaacctggctttagaaacttagccgttccaaagtcgga |
31159733 |
T |
|
| Q |
146 |
gacatgagcttcatagtcaagattgattagaacatttttacttgatatatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagca |
245 |
Q |
| |
|
||| |||||||||||||||||||| | || ||||| || || |||||||||||||||||||||||||| || ||||| ||||||||||||||||||||| |
|
|
| T |
31159732 |
gacttgagcttcatagtcaagattaagaaggacattcttgctcgatatatcacgatgaacaataggaggagaacaatcatgatgcaagtaggacaaagca |
31159633 |
T |
|
| Q |
246 |
ttggcaacacctttaacaacattcaccctcttttcccaatcaaatgcaatggcttgtttttcattgtttagtatttgatctaagcttc |
333 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| | ||| ||||||| |||||| ||||||||| |
|
|
| T |
31159632 |
ttggccacacctttaacaacattcaccctcttttcccaatcaaatgcagtggcttgtgtatcactgtttagcatttgacctaagcttc |
31159545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 46 - 316
Target Start/End: Complemental strand, 31241935 - 31241665
Alignment:
| Q |
46 |
ggaaatggttctaacctggagctgcataccctagagttcctgcaaaattggtcccattagtttcatcaggctttagaaacttagcgatcccgaagtcgga |
145 |
Q |
| |
|
|||||||| |||||||||||||||||||||| | ||| |||||||| | ||||| | || | | | ||||||||||||||||| | || |||||||| |
|
|
| T |
31241935 |
ggaaatggatctaacctggagctgcatacccaaaagtgcctgcaaattgggtccaactaagtaaacctggctttagaaacttagccgttccaaagtcgga |
31241836 |
T |
|
| Q |
146 |
gacatgagcttcatagtcaagattgattagaacatttttacttgatatatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagca |
245 |
Q |
| |
|
||| |||||||||||||||||||| | || ||||| || || |||||||||||||||||||||||||| || ||||| ||||||||||||||||||||| |
|
|
| T |
31241835 |
gacttgagcttcatagtcaagattaagaaggacattcttgctcgatatatcacgatgaacaataggaggagaacaatcatgatgcaagtaggacaaagca |
31241736 |
T |
|
| Q |
246 |
ttggcaacacctttaacaacattcaccctcttttcccaatcaaatgcaatggcttgtttttcattgtttag |
316 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| | ||| ||||||| |
|
|
| T |
31241735 |
ttggccacacctttaacaacattcaccctcttttcccaatcaaatgcagtggcttgtgtatcactgtttag |
31241665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 174 - 388
Target Start/End: Complemental strand, 31216303 - 31216089
Alignment:
| Q |
174 |
agaacatttttacttgatatatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaacaacattcaccc |
273 |
Q |
| |
|
|||||||| || |||||||| ||||| ||||| || |||||| ||| || ||||||| |||||||||||||| || |||||| |||||| |||||||| |
|
|
| T |
31216303 |
agaacattcttgcttgatatgtcacggtgaactattggaggtatgcagtcatgatgcatgtaggacaaagcatcagccacacctctaacaatattcaccc |
31216204 |
T |
|
| Q |
274 |
tcttttcccaatcaaatgcaatggcttgtttttcattgtttagtatttga-tctaagcttccaccttccatgaacttgtaaaccaaaaatgagaacttag |
372 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||||| |||||| || ||| |||||||||||| |||||| ||||||||||||||||| | | |
|
|
| T |
31216203 |
tcttttcccaatcaaatgcaatggcttgtgtgtcattgtttaacatttgagtcaaag-ttccaccttccaagaacttataaaccaaaaatgagaatcttg |
31216105 |
T |
|
| Q |
373 |
aatgttggcaatatcc |
388 |
Q |
| |
|
||||| |||||||||| |
|
|
| T |
31216104 |
aatgtcggcaatatcc |
31216089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 186 - 300
Target Start/End: Complemental strand, 14606774 - 14606660
Alignment:
| Q |
186 |
cttgatatatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaacaacattcaccctcttttcccaat |
285 |
Q |
| |
|
||||||||||| ||||||||||| ||||| |||||||| ||||||| |||| | ||||||||||| ||| |||||| |||||||||||||| | ||||| |
|
|
| T |
14606774 |
cttgatatatctcgatgaacaattggaggcgagcaatcatgatgcatgtagcataaagcattggctacatctttaatgacattcaccctcttattccaat |
14606675 |
T |
|
| Q |
286 |
caaatgcaatggctt |
300 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
14606674 |
caaatgcaattgctt |
14606660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 186 - 300
Target Start/End: Complemental strand, 16025951 - 16025837
Alignment:
| Q |
186 |
cttgatatatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaacaacattcaccctcttttcccaat |
285 |
Q |
| |
|
||||||||||| ||||||||||| ||||| |||||||| ||||||| |||| | ||||||||||| ||| |||||| |||||||||||||| | ||||| |
|
|
| T |
16025951 |
cttgatatatctcgatgaacaattggaggcgagcaatcatgatgcatgtagcataaagcattggctacatctttaatgacattcaccctcttattccaat |
16025852 |
T |
|
| Q |
286 |
caaatgcaatggctt |
300 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
16025851 |
caaatgcaattgctt |
16025837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 186 - 291
Target Start/End: Original strand, 15676319 - 15676424
Alignment:
| Q |
186 |
cttgatatatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaacaacattcaccctcttttcccaat |
285 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||| || |||| ||| | |||||||| || ||| |||||| ||||||||||| ||| | ||||| |
|
|
| T |
15676319 |
cttgatatatctcgatgaacaattggaggtgagcaatcatggtgcatatagtataaagcattagctacatctttaataacattcacccgcttattccaat |
15676418 |
T |
|
| Q |
286 |
caaatg |
291 |
Q |
| |
|
|||||| |
|
|
| T |
15676419 |
caaatg |
15676424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 186 - 300
Target Start/End: Original strand, 15664484 - 15664598
Alignment:
| Q |
186 |
cttgatatatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaacaacattcaccctcttttcccaat |
285 |
Q |
| |
|
||||||||||| ||||||||||| ||||| | |||||| || |||| ||| | |||||||| || | | |||||| ||||||||||||||||| |||| |
|
|
| T |
15664484 |
cttgatatatctcgatgaacaattggaggggtgcaatcatggtgcatatagcataaagcattcgctatatctttaataacattcaccctctttttccaac |
15664583 |
T |
|
| Q |
286 |
caaatgcaatggctt |
300 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
15664584 |
caaatgcaattgctt |
15664598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 186 - 300
Target Start/End: Complemental strand, 16173427 - 16173313
Alignment:
| Q |
186 |
cttgatatatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaacaacattcaccctcttttcccaat |
285 |
Q |
| |
|
||||||||||| ||||||||||| ||||| |||||||| || |||| ||| | |||||||| || ||| |||||| |||||||||| ||||| ||||| |
|
|
| T |
16173427 |
cttgatatatctcgatgaacaattggaggcgagcaatcatggtgcatatagcataaagcattagctacatctttaatgacattcacccgctttttccaat |
16173328 |
T |
|
| Q |
286 |
caaatgcaatggctt |
300 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
16173327 |
taaatgcaattgctt |
16173313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 57 - 301
Target Start/End: Complemental strand, 17849527 - 17849283
Alignment:
| Q |
57 |
taacctggagctgcataccctagagttcctgcaaaattggtcccattagtttcatcaggctttagaaacttagcgatcccgaagtcggagacatgagctt |
156 |
Q |
| |
|
||||||||||| ||||| || | ||||||||||| ||||| ||| ||| |||||| ||||||| ||||| || || ||||| |||||||||||| |
|
|
| T |
17849527 |
taacctggagcagcatatccaatggttcctgcaaatgaggtccaattggttgaatcaggatttagaagtttagctattccaaagtcagagacatgagcta |
17849428 |
T |
|
| Q |
157 |
catagtcaagattgattagaacatttttacttgatatatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacc |
256 |
Q |
| |
|
|||| || | | | || | ||| || ||||||||||| ||||||||||| ||||||||||||| ||||||| || | | |||||| || ||| | |
|
|
| T |
17849427 |
catattccaagtctagaagtatattcttgcttgatatatctcgatgaacaatcggaggtgagcaatgatgatgcatataacatagagcattagctacatc |
17849328 |
T |
|
| Q |
257 |
tttaacaacattcaccctcttttcccaatcaaatgcaatggcttg |
301 |
Q |
| |
|
||||| |||||||||| ||| | ||||||||||||||| ||||| |
|
|
| T |
17849327 |
tttaatgacattcacccgcttattccaatcaaatgcaattgcttg |
17849283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 300
Target Start/End: Complemental strand, 16103759 - 16103645
Alignment:
| Q |
186 |
cttgatatatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaacaacattcaccctcttttcccaat |
285 |
Q |
| |
|
||||||||||| | |||||||| ||||| |||||||| ||||||| |||| | |||||||| || ||| |||||| |||||||| ||||| | ||||| |
|
|
| T |
16103759 |
cttgatatatctctgtgaacaattggaggcgagcaatcatgatgcatgtagcataaagcattagctacatctttaaggacattcactctcttgttccaat |
16103660 |
T |
|
| Q |
286 |
caaatgcaatggctt |
300 |
Q |
| |
|
|||| ||||| |||| |
|
|
| T |
16103659 |
caaacgcaattgctt |
16103645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 81 - 300
Target Start/End: Original strand, 17825235 - 17825454
Alignment:
| Q |
81 |
gttcctgcaaaattggtcccattagtttcatcaggctttagaaacttagcgatcccgaagtcggagacatgagcttcatagtcaagattgattagaacat |
180 |
Q |
| |
|
||||||||||| ||||| ||| ||| |||||| || |||| |||||| || || ||||| ||||||||||| |||| || | ||| | || | || |
|
|
| T |
17825235 |
gttcctgcaaatgaggtccaattggttgaatcaggattaagaagcttagctattccaaagtcagagacatgagccacatattccaaatttagaagtatat |
17825334 |
T |
|
| Q |
181 |
ttttacttgatatatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaacaacattcaccctcttttc |
280 |
Q |
| |
|
| || ||||||||||| ||||||||||| ||||||||||||| ||||||| || | | |||||| || | | |||||| ||||||||||||| | |
|
|
| T |
17825335 |
tcttgcttgatatatctcgatgaacaattggaggtgagcaatgatgatgcatataacatacagcattagctatatctttaatggcattcaccctcttatt |
17825434 |
T |
|
| Q |
281 |
ccaatcaaatgcaatggctt |
300 |
Q |
| |
|
||| ||||||||||| |||| |
|
|
| T |
17825435 |
ccagtcaaatgcaattgctt |
17825454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0289 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0289
Description:
Target: scaffold0289; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 186 - 300
Target Start/End: Original strand, 4810 - 4924
Alignment:
| Q |
186 |
cttgatatatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaacaacattcaccctcttttcccaat |
285 |
Q |
| |
|
||||||||||| ||||||||||| ||||| | |||||| || |||| ||| | |||||||| || | | |||||| ||||||||||||||||| |||| |
|
|
| T |
4810 |
cttgatatatctcgatgaacaattggaggggtgcaatcatggtgcatatagcataaagcattcgctatatctttaataacattcaccctctttttccaac |
4909 |
T |
|
| Q |
286 |
caaatgcaatggctt |
300 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
4910 |
caaatgcaattgctt |
4924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0289; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 186 - 300
Target Start/End: Original strand, 13643 - 13757
Alignment:
| Q |
186 |
cttgatatatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaacaacattcaccctcttttcccaat |
285 |
Q |
| |
|
||||||||||| ||||||||||| ||||| | |||||| || |||| ||| | |||||||| || | | |||||| ||||||||||||||||| |||| |
|
|
| T |
13643 |
cttgatatatctcgatgaacaattggaggggtgcaatcatggtgcatatagcataaagcattcgctatatctttaataacattcaccctctttttccaac |
13742 |
T |
|
| Q |
286 |
caaatgcaatggctt |
300 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
13743 |
caaatgcaattgctt |
13757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 176 - 290
Target Start/End: Complemental strand, 15002987 - 15002873
Alignment:
| Q |
176 |
aacatttttacttgatatatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaacaacattcaccctc |
275 |
Q |
| |
|
|||||| || || |||||||| ||||||||||||||||| || ||||| ||||||| ||| | |||||||| || ||| |||||| | |||||||||| |
|
|
| T |
15002987 |
aacattcttgctggatatatctcgatgaacaataggaggggaacaatcatgatgcagatagcataaagcattagctacatctttaatgatattcaccctc |
15002888 |
T |
|
| Q |
276 |
ttttcccaatcaaat |
290 |
Q |
| |
|
|| | |||||||||| |
|
|
| T |
15002887 |
ttattccaatcaaat |
15002873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 290
Target Start/End: Original strand, 14531977 - 14532091
Alignment:
| Q |
176 |
aacatttttacttgatatatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaacaacattcaccctc |
275 |
Q |
| |
|
|||||| || || |||||||| ||||||||||||||||||||||| || ||||| | ||| | |||||||| || | | |||||| |||||||||||| |
|
|
| T |
14531977 |
aacattcttgctggatatatctcgatgaacaataggaggtgagcagtcatgatgtagatagcataaagcattagctatatctttaatgacattcaccctc |
14532076 |
T |
|
| Q |
276 |
ttttcccaatcaaat |
290 |
Q |
| |
|
| | |||||||||| |
|
|
| T |
14532077 |
ctattccaatcaaat |
14532091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 290
Target Start/End: Complemental strand, 15011880 - 15011766
Alignment:
| Q |
176 |
aacatttttacttgatatatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaacaacattcaccctc |
275 |
Q |
| |
|
|||||| || || |||||||| ||||||||||||||||| ||||| || ||||||| ||| | || ||||| || | | |||||| || |||||||||| |
|
|
| T |
15011880 |
aacattcttgctggatatatctcgatgaacaataggaggcgagcagtcatgatgcagatagaataaggcattagctatatctttaataatattcaccctc |
15011781 |
T |
|
| Q |
276 |
ttttcccaatcaaat |
290 |
Q |
| |
|
|| | |||||||||| |
|
|
| T |
15011780 |
ttattccaatcaaat |
15011766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 261
Target Start/End: Complemental strand, 14504855 - 14504777
Alignment:
| Q |
183 |
ttacttgatatatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaa |
261 |
Q |
| |
|
||||| |||||||| ||||||||||| | |||||||| ||| ||||||| |||| | |||||||| || ||| |||||| |
|
|
| T |
14504855 |
ttactcgatatatcgcgatgaacaattgcaggtgagcgatcatgatgcatgtagtataaagcattagctacatctttaa |
14504777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 290
Target Start/End: Complemental strand, 15017995 - 15017881
Alignment:
| Q |
176 |
aacatttttacttgatatatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaacaacattcaccctc |
275 |
Q |
| |
|
|||||| || || |||||||| |||||||| |||||||| || ||||| ||||||| ||| | || ||||| || | | |||||| || |||||||||| |
|
|
| T |
15017995 |
aacattcttgctggatatatctcgatgaactataggaggggaacaatcatgatgcagatagcataaggcattagctatatctttaataatattcaccctc |
15017896 |
T |
|
| Q |
276 |
ttttcccaatcaaat |
290 |
Q |
| |
|
|| | |||||||||| |
|
|
| T |
15017895 |
ttattccaatcaaat |
15017881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 14521856 - 14521909
Alignment:
| Q |
176 |
aacatttttacttgatatatcacgatgaacaataggaggtgagcaatcgtgatg |
229 |
Q |
| |
|
|||||| || || |||||||| ||||||||||||||||||||||| || ||||| |
|
|
| T |
14521856 |
aacattcttgctggatatatctcgatgaacaataggaggtgagcagtcatgatg |
14521909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 290
Target Start/End: Complemental strand, 15033319 - 15033218
Alignment:
| Q |
189 |
gatatatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaacaacattcaccctcttttcccaatcaa |
288 |
Q |
| |
|
|||||||| ||||||||||| | |||||| ||||| ||||||| ||| | |||||||| || | | |||||| ||||| ||||||| | | |||||||| |
|
|
| T |
15033319 |
gatatatcgcgatgaacaattgaaggtgaacaatcatgatgcatatagcataaagcattagctatatctttaataacatccaccctcctattccaatcaa |
15033220 |
T |
|
| Q |
289 |
at |
290 |
Q |
| |
|
|| |
|
|
| T |
15033219 |
at |
15033218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Original strand, 23203493 - 23203522
Alignment:
| Q |
6 |
accagctacacatacttgataaaattataa |
35 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
23203493 |
accagctacacatacttgataaaattataa |
23203522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 261
Target Start/End: Complemental strand, 7368 - 7283
Alignment:
| Q |
176 |
aacatttttacttgatatatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaa |
261 |
Q |
| |
|
|||||| || || |||||||||||||||||||| | ||||||||||| |||||||| ||| | |||||||| || |||||||||| |
|
|
| T |
7368 |
aacattcttgctggatatatcacgatgaacaattgaaggtgagcaattgtgatgcatatagcataaagcattagctacacctttaa |
7283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 135 - 290
Target Start/End: Complemental strand, 13709 - 13554
Alignment:
| Q |
135 |
ccgaagtcggagacatgagcttcatagtcaagattgattagaacatttttacttgatatatcacgatgaacaataggaggtgagcaatcgtgatgcaagt |
234 |
Q |
| |
|
|||||||| |||||||||||| |||| || | || | | |||||| || || |||||||| ||||||||||||||||| || ||||| ||||||| | |
|
|
| T |
13709 |
ccgaagtctgagacatgagctacatattccaaatccaaaataacattcttgctggatatatctcgatgaacaataggaggggaacaatcatgatgcagat |
13610 |
T |
|
| Q |
235 |
aggacaaagcattggcaacacctttaacaacattcaccctcttttcccaatcaaat |
290 |
Q |
| |
|
|| | || ||||| || | | |||||| | |||||||||||| | |||||||||| |
|
|
| T |
13609 |
agaataaggcattagctatatctttaatgatattcaccctcttattccaatcaaat |
13554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 261
Target Start/End: Complemental strand, 8012 - 7927
Alignment:
| Q |
176 |
aacatttttacttgatatatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaa |
261 |
Q |
| |
|
|||||| || || |||||||||||||||||||| | ||||||||||| |||||||| ||| | |||||||| || |||||||||| |
|
|
| T |
8012 |
aacattcttgctggatatatcacgatgaacaattgaaggtgagcaattgtgatgcatatagcataaagcattagctacacctttaa |
7927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 135 - 290
Target Start/End: Complemental strand, 14352 - 14197
Alignment:
| Q |
135 |
ccgaagtcggagacatgagcttcatagtcaagattgattagaacatttttacttgatatatcacgatgaacaataggaggtgagcaatcgtgatgcaagt |
234 |
Q |
| |
|
|||||||| |||||||||||| |||| || | || | | |||||| || || |||||||| ||||||||||||||||| || ||||| ||||||| | |
|
|
| T |
14352 |
ccgaagtctgagacatgagctacatattccaaatccaaaataacattcttgctggatatatctcgatgaacaataggaggggaacaatcatgatgcagat |
14253 |
T |
|
| Q |
235 |
aggacaaagcattggcaacacctttaacaacattcaccctcttttcccaatcaaat |
290 |
Q |
| |
|
|| | || ||||| || | | |||||| | |||||||||||| | |||||||||| |
|
|
| T |
14252 |
agaataaggcattagctatatctttaatgatattcaccctcttattccaatcaaat |
14197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 176 - 223
Target Start/End: Complemental strand, 17028720 - 17028673
Alignment:
| Q |
176 |
aacatttttacttgatatatcacgatgaacaataggaggtgagcaatc |
223 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||| | |||||||||||| |
|
|
| T |
17028720 |
aacattcttactggatatatcacgatgaacaattgaaggtgagcaatc |
17028673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 176 - 223
Target Start/End: Complemental strand, 17559156 - 17559109
Alignment:
| Q |
176 |
aacatttttacttgatatatcacgatgaacaataggaggtgagcaatc |
223 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||| | |||||||||||| |
|
|
| T |
17559156 |
aacattcttactggatatatcacgatgaacaattgaaggtgagcaatc |
17559109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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