View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11550_high_10 (Length: 306)

Name: NF11550_high_10
Description: NF11550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11550_high_10
NF11550_high_10
[»] chr2 (3 HSPs)
chr2 (1-268)||(34761119-34761386)
chr2 (204-263)||(6592996-6593055)
chr2 (215-252)||(2609080-2609117)
[»] chr3 (7 HSPs)
chr3 (206-260)||(4474334-4474388)
chr3 (216-259)||(27178143-27178186)
chr3 (211-261)||(14349374-14349424)
chr3 (216-260)||(14340736-14340780)
chr3 (172-212)||(14748187-14748227)
chr3 (212-260)||(43747278-43747326)
chr3 (216-260)||(48348258-48348302)
[»] chr5 (6 HSPs)
chr5 (172-212)||(683440-683480)
chr5 (212-260)||(43098027-43098075)
chr5 (203-261)||(20629726-20629784)
chr5 (218-268)||(26702672-26702722)
chr5 (218-268)||(26972405-26972455)
chr5 (212-260)||(3999085-3999133)
[»] chr7 (7 HSPs)
chr7 (214-268)||(23746153-23746207)
chr7 (224-260)||(44312756-44312792)
chr7 (216-263)||(8074139-8074186)
chr7 (210-260)||(18186436-18186486)
chr7 (171-212)||(28117699-28117740)
chr7 (216-260)||(20185182-20185226)
chr7 (216-260)||(29834179-29834223)
[»] scaffold0248 (1 HSPs)
scaffold0248 (219-260)||(677-718)
[»] scaffold0194 (1 HSPs)
scaffold0194 (215-260)||(24895-24940)
[»] chr1 (8 HSPs)
chr1 (207-260)||(23220828-23220881)
chr1 (208-252)||(8009990-8010034)
chr1 (65-116)||(6556467-6556518)
chr1 (212-263)||(16545826-16545877)
chr1 (223-260)||(27864184-27864221)
chr1 (171-212)||(40923701-40923742)
chr1 (216-252)||(17760966-17761002)
chr1 (216-260)||(18632606-18632650)
[»] chr8 (3 HSPs)
chr8 (224-260)||(20228242-20228278)
chr8 (210-263)||(25144204-25144257)
chr8 (212-260)||(37263357-37263405)
[»] chr4 (4 HSPs)
chr4 (209-252)||(51362815-51362858)
chr4 (170-202)||(1074461-1074493)
chr4 (216-260)||(2653956-2654000)
chr4 (212-260)||(3658191-3658239)
[»] chr6 (1 HSPs)
chr6 (216-266)||(33401314-33401364)
[»] scaffold0417 (1 HSPs)
scaffold0417 (211-260)||(9604-9653)


Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 34761386 - 34761119
Alignment:
Q  1 ctattgtttttatagtgcagttccctgttttgaataatattagtcgactagacaagtacaatcaccaaattagtcgttaactttgtagcaccctctcaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |  ||||||||    
T  34761386 ctattgtttttatagtgcagttccctgttttgaataatattagtcgactaaacaagtacaatcaccaaattagtcgttgactttgtagtaagctctcaaa 34761287  T
Q  101 tagacccttgagattaatatttcaaaaagattccctattctattaaactgtacggttgatcctattattcctatatttaaccacttattatcaattaagt 200  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||     
T  34761286 tagacccttgagattgatatttcaaaaagattccctattctattaaactgtacggttgatccaattattcctatatttaaccacttactatcaattaagg 34761187  T
Q  201 ccatatattttaggtttaatagtagttttcgtctcctaacttttacgaagttacgattttagctcctt 268  Q
    |||||||||||||||||||||| |||||||||| ||||||||| |||||||| |||||||| ||||||    
T  34761186 ccatatattttaggtttaatagcagttttcgtcccctaactttcacgaagttgcgattttaactcctt 34761119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 263
Target Start/End: Complemental strand, 6593055 - 6592996
Alignment:
Q  204 tatattttaggtttaatagtagttttcgtctcctaacttttacgaagttacgattttagc 263  Q
    ||||||||||| |||| ||||||||||| | ||||||||| |||||||| ||||||||||    
T  6593055 tatattttaggcttaacagtagttttcgccacctaactttcacgaagttgcgattttagc 6592996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 2609080 - 2609117
Alignment:
Q  215 tttaatagtagttttcgtctcctaacttttacgaagtt 252  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  2609080 tttaatagtagttttcgccccctaacttttacgaagtt 2609117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 206 - 260
Target Start/End: Complemental strand, 4474388 - 4474334
Alignment:
Q  206 tattttaggtttaatagtagttttcgtctcctaacttttacgaagttacgatttt 260  Q
    ||||||||||||||||| |||||||  |||||||||||||||||||| |||||||    
T  4474388 tattttaggtttaatagcagttttctcctcctaacttttacgaagttgcgatttt 4474334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 216 - 259
Target Start/End: Original strand, 27178143 - 27178186
Alignment:
Q  216 ttaatagtagttttcgtctcctaacttttacgaagttacgattt 259  Q
    ||||||| |||||||||| |||||||||||||||||| ||||||    
T  27178143 ttaatagcagttttcgtcccctaacttttacgaagttgcgattt 27178186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 261
Target Start/End: Complemental strand, 14349424 - 14349374
Alignment:
Q  211 taggtttaatagtagttttcgtctcctaacttttacgaagttacgatttta 261  Q
    |||| ||||||| |||||||| | |||||||||||||||||| ||||||||    
T  14349424 taggcttaatagcagttttcgccccctaacttttacgaagttgcgatttta 14349374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 14340736 - 14340780
Alignment:
Q  216 ttaatagtagttttcgtctcctaacttttacgaagttacgatttt 260  Q
    ||||||| |||||||| | ||||||||| ||||||||||||||||    
T  14340736 ttaataggagttttcgccccctaactttcacgaagttacgatttt 14340780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 14748187 - 14748227
Alignment:
Q  172 tatatttaaccacttattatcaattaagtccatatatttta 212  Q
    |||||||||||||||||| |||||||||||  |||||||||    
T  14748187 tatatttaaccacttattttcaattaagtctctatatttta 14748227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 260
Target Start/End: Original strand, 43747278 - 43747326
Alignment:
Q  212 aggtttaatagtagttttcgtctcctaacttttacgaagttacgatttt 260  Q
    ||||||||||| ||||||||||   |||||||||||||||| |||||||    
T  43747278 aggtttaatagcagttttcgtcctataacttttacgaagttgcgatttt 43747326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 48348258 - 48348302
Alignment:
Q  216 ttaatagtagttttcgtctcctaacttttacgaagttacgatttt 260  Q
    ||||||| |||||||| | |||||||||||||||||| |||||||    
T  48348258 ttaatagcagttttcgccccctaacttttacgaagttgcgatttt 48348302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 683440 - 683480
Alignment:
Q  172 tatatttaaccacttattatcaattaagtccatatatttta 212  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  683440 tatatttaaccacttattatcaattaagtccttatatttta 683480  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 212 - 260
Target Start/End: Original strand, 43098027 - 43098075
Alignment:
Q  212 aggtttaatagtagttttcgtctcctaacttttacgaagttacgatttt 260  Q
    ||||||||||| |||||||||| |||||||||||||||||| |||||||    
T  43098027 aggtttaatagcagttttcgtcccctaacttttacgaagttgcgatttt 43098075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 261
Target Start/End: Original strand, 20629726 - 20629784
Alignment:
Q  203 atatattttaggtttaatagtagttttcgtctcctaacttttacgaagttacgatttta 261  Q
    |||||||||||||||||||| |||||||| | | ||||||| || ||||| ||||||||    
T  20629726 atatattttaggtttaatagcagttttcgccccttaactttcacaaagttgcgatttta 20629784  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 268
Target Start/End: Complemental strand, 26702722 - 26702672
Alignment:
Q  218 aatagtagttttcgtctcctaacttttacgaagttacgattttagctcctt 268  Q
    ||||||| |||| ||| |||||||||||||||||| ||||||| |||||||    
T  26702722 aatagtaatttttgtcccctaacttttacgaagttgcgattttggctcctt 26702672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 268
Target Start/End: Complemental strand, 26972455 - 26972405
Alignment:
Q  218 aatagtagttttcgtctcctaacttttacgaagttacgattttagctcctt 268  Q
    ||||||| |||| ||| |||||||||||||||||| ||||||| |||||||    
T  26972455 aatagtaatttttgtcccctaacttttacgaagttgcgattttggctcctt 26972405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 260
Target Start/End: Original strand, 3999085 - 3999133
Alignment:
Q  212 aggtttaatagtagttttcgtctcctaacttttacgaagttacgatttt 260  Q
    ||||||||||| |||||||| | ||||||||| |||||||| |||||||    
T  3999085 aggtttaatagcagttttcgccccctaactttcacgaagttgcgatttt 3999133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 268
Target Start/End: Complemental strand, 23746207 - 23746153
Alignment:
Q  214 gtttaatagtagttttcgtctcctaacttttacgaagttacgattttagctcctt 268  Q
    ||||||||| || ||||||| |||||||||||||||||| |||||||||| ||||    
T  23746207 gtttaatagcagctttcgtcccctaacttttacgaagttgcgattttagcccctt 23746153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 260
Target Start/End: Original strand, 44312756 - 44312792
Alignment:
Q  224 agttttcgtctcctaacttttacgaagttacgatttt 260  Q
    ||||||||||||||||||||||||||||| |||||||    
T  44312756 agttttcgtctcctaacttttacgaagttgcgatttt 44312792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 216 - 263
Target Start/End: Complemental strand, 8074186 - 8074139
Alignment:
Q  216 ttaatagtagttttcgtctcctaacttttacgaagttacgattttagc 263  Q
    ||||||| |||||||| | ||||||||| |||||||||||||||||||    
T  8074186 ttaatagcagttttcgccccctaactttcacgaagttacgattttagc 8074139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 18186436 - 18186486
Alignment:
Q  210 ttaggtttaatagtagttttcgtctcctaacttttacgaagttacgatttt 260  Q
    |||||||||||||| ||||||| | ||||||||||| |||||| |||||||    
T  18186436 ttaggtttaatagtggttttcgccccctaacttttatgaagttgcgatttt 18186486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 212
Target Start/End: Complemental strand, 28117740 - 28117699
Alignment:
Q  171 ctatatttaaccacttattatcaattaagtccatatatttta 212  Q
    ||||||||||||||||| |||||| ||||||| |||||||||    
T  28117740 ctatatttaaccacttactatcaactaagtccttatatttta 28117699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 20185226 - 20185182
Alignment:
Q  216 ttaatagtagttttcgtctcctaacttttacgaagttacgatttt 260  Q
    |||||||||||||||| | ||||||||| |||||||| |||||||    
T  20185226 ttaatagtagttttcgccccctaactttcacgaagttgcgatttt 20185182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 29834179 - 29834223
Alignment:
Q  216 ttaatagtagttttcgtctcctaacttttacgaagttacgatttt 260  Q
    |||||||||||||||| ||| ||||| |||||||||| |||||||    
T  29834179 ttaatagtagttttcgcctcttaactgttacgaagttgcgatttt 29834223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0248 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 260
Target Start/End: Complemental strand, 718 - 677
Alignment:
Q  219 atagtagttttcgtctcctaacttttacgaagttacgatttt 260  Q
    |||| ||||||||||||||||||||||||||||| |||||||    
T  718 atagcagttttcgtctcctaacttttacgaagttgcgatttt 677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 260
Target Start/End: Original strand, 24895 - 24940
Alignment:
Q  215 tttaatagtagttttcgtctcctaacttttacgaagttacgatttt 260  Q
    |||| ||| |||||||||| ||||||||||||||||||||||||||    
T  24895 tttagtagcagttttcgtcccctaacttttacgaagttacgatttt 24940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 260
Target Start/End: Complemental strand, 23220881 - 23220828
Alignment:
Q  207 attttaggtttaatagtagttttcgtctcctaacttttacgaagttacgatttt 260  Q
    |||||||| || |||| |||||||| | ||||||||||||||||||||||||||    
T  23220881 attttaggcttgatagcagttttcgccccctaacttttacgaagttacgatttt 23220828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 252
Target Start/End: Complemental strand, 8010034 - 8009990
Alignment:
Q  208 ttttaggtttaatagtagttttcgtctcctaacttttacgaagtt 252  Q
    ||||||| |||||||||||||| | ||||||||||||||||||||    
T  8010034 ttttaggcttaatagtagttttagcctcctaacttttacgaagtt 8009990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 65 - 116
Target Start/End: Original strand, 6556467 - 6556518
Alignment:
Q  65 ccaaattagtcgttaactttgtagcaccctctcaaatagacccttgagatta 116  Q
    ||||||||||| ||||||||| || || ||||||||||||||| ||||||||    
T  6556467 ccaaattagtctttaactttgcaggacactctcaaatagacccctgagatta 6556518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 16545877 - 16545826
Alignment:
Q  212 aggtttaatagtagttttcgtctcctaacttttacgaagttacgattttagc 263  Q
    |||||||||| |||||||||  || |||||||||||||||| ||||||||||    
T  16545877 aggtttaataatagttttcgcttcttaacttttacgaagttgcgattttagc 16545826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 260
Target Start/End: Original strand, 27864184 - 27864221
Alignment:
Q  223 tagttttcgtctcctaacttttacgaagttacgatttt 260  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  27864184 tagttttcgtctcctaactttcacgaagttgcgatttt 27864221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 212
Target Start/End: Complemental strand, 40923742 - 40923701
Alignment:
Q  171 ctatatttaaccacttattatcaattaagtccatatatttta 212  Q
    |||||||||| |||||||||||| |||||||||| |||||||    
T  40923742 ctatatttaatcacttattatcacttaagtccatgtatttta 40923701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 252
Target Start/End: Complemental strand, 17761002 - 17760966
Alignment:
Q  216 ttaatagtagttttcgtctcctaacttttacgaagtt 252  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  17761002 ttaatagcagttttcgtctcttaacttttacgaagtt 17760966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 18632650 - 18632606
Alignment:
Q  216 ttaatagtagttttcgtctcctaacttttacgaagttacgatttt 260  Q
    ||||||| |||||||| | |||||||||||||||||| |||||||    
T  18632650 ttaatagcagttttcgccccctaacttttacgaagttgcgatttt 18632606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 260
Target Start/End: Original strand, 20228242 - 20228278
Alignment:
Q  224 agttttcgtctcctaacttttacgaagttacgatttt 260  Q
    ||||||||||||||||||||||||||||| |||||||    
T  20228242 agttttcgtctcctaacttttacgaagttgcgatttt 20228278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 263
Target Start/End: Complemental strand, 25144257 - 25144204
Alignment:
Q  210 ttaggtttaatagtagttttcgtctcctaacttttacgaagttacgattttagc 263  Q
    ||||||||||||| | |||||| |||||||| || |||||||| ||||||||||    
T  25144257 ttaggtttaatagcaattttcgcctcctaacattcacgaagttgcgattttagc 25144204  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 260
Target Start/End: Original strand, 37263357 - 37263405
Alignment:
Q  212 aggtttaatagtagttttcgtctcctaacttttacgaagttacgatttt 260  Q
    ||||||||||| |||||||| | | |||||||||||||||| |||||||    
T  37263357 aggtttaatagcagttttcgccccttaacttttacgaagttgcgatttt 37263405  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 252
Target Start/End: Complemental strand, 51362858 - 51362815
Alignment:
Q  209 tttaggtttaatagtagttttcgtctcctaacttttacgaagtt 252  Q
    |||||||||||||| |||||||||| |||||||||||| |||||    
T  51362858 tttaggtttaatagcagttttcgtcccctaacttttacaaagtt 51362815  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 202
Target Start/End: Complemental strand, 1074493 - 1074461
Alignment:
Q  170 cctatatttaaccacttattatcaattaagtcc 202  Q
    |||||||||||||||||| ||||||||||||||    
T  1074493 cctatatttaaccacttactatcaattaagtcc 1074461  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 2653956 - 2654000
Alignment:
Q  216 ttaatagtagttttcgtctcctaacttttacgaagttacgatttt 260  Q
    ||||||| |||||| | |||||||||||||||||||| |||||||    
T  2653956 ttaatagcagtttttgcctcctaacttttacgaagttgcgatttt 2654000  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 3658239 - 3658191
Alignment:
Q  212 aggtttaatagtagttttcgtctcctaacttttacgaagttacgatttt 260  Q
    ||||||||||| ||||||||||  |||||||||| |||||| |||||||    
T  3658239 aggtttaatagcagttttcgtcctctaacttttatgaagttgcgatttt 3658191  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 266
Target Start/End: Complemental strand, 33401364 - 33401314
Alignment:
Q  216 ttaatagtagttttcgtctcctaacttttacgaagttacgattttagctcc 266  Q
    ||||||| |||||||  | |||||||||||||||||||||||||| |||||    
T  33401364 ttaatagcagttttcaccccctaacttttacgaagttacgattttggctcc 33401314  T

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Target: scaffold0417 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 9653 - 9604
Alignment:
Q  211 taggtttaatagtagttttcgtctcctaacttttacgaagttacgatttt 260  Q
    |||||||||||| |||||||  ||||||||||| |||||||| |||||||    
T  9653 taggtttaatagcagttttcacctcctaactttcacgaagttgcgatttt 9604  T

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