View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11550_high_3 (Length: 628)
Name: NF11550_high_3
Description: NF11550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11550_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 530; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 53 - 610
Target Start/End: Original strand, 37272589 - 37273146
Alignment:
| Q |
53 |
gtttcactgtctcattctgttgatttggttaagagcaggctgcaaaatattataaagaacccaaagaatagctggtgctacaacaaacaacagaagctga |
152 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
37272589 |
gtttcactgtctcattctgttgatttggttaagagcaggctgcaaaatattataaagaacccaaagaatagctggtgttaccacaaacaacagaagctga |
37272688 |
T |
|
| Q |
153 |
cccctgttatcactaccagcagcttcagcaattgcagccatttcactagcaattgcatcttgtgttgatacaaaccctgaagctgctaacccacccccaa |
252 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37272689 |
cccctgttatcactaccagcagcttcagcaattgcagtcatttcactagcaattgcatcttgtgttgatacaaaccctgaagctgctaacccacccccaa |
37272788 |
T |
|
| Q |
253 |
gacctaaaccaattataactcctttatcgttacgcatacggttgatttggttaagtgctggttgaagaatgttgtacagaacccaagcaatggctggaat |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
37272789 |
gacctaaaccaattataactcctttatcgttacgcatacggttgatttggttaagtgctggttgaagaatgttgtacagaacccaagctatggctggaat |
37272888 |
T |
|
| Q |
353 |
taatggtaacaaaagtgctaaaccacggttggctgatgatccttctgctatttcagctatttgttgtgctgcaaaagctgcatcacaggttgagagtgtt |
452 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37272889 |
taatggtaacaaaagtgctaaaccacggttgtctgatgatccttctgctatttcagctatttgttgtgctgcaaaagctgcatcacaggttgagagtgtt |
37272988 |
T |
|
| Q |
453 |
gagaatattgcccctgctagtgctgttcctgctatggatgttgatagtttaatattttctgttgtgggaattttctttggaagaaggttcttgagagaaa |
552 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37272989 |
gagaatattgcccctgctagtgctgttcctgctatggatgttgatagtttaatgttttctgttgtgggaattttctttggaagaaggttcttgagggaaa |
37273088 |
T |
|
| Q |
553 |
tgagggaagtggggtttgtaatgagcttagttgggttgtggaactttggtgaactagt |
610 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37273089 |
tgagggaagtggggtttgtaatgagcttagttgggttgtggaactttggtgaactagt |
37273146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 53 - 157
Target Start/End: Original strand, 37268551 - 37268655
Alignment:
| Q |
53 |
gtttcactgtctcattctgttgatttggttaagagcaggctgcaaaatattataaagaacccaaagaatagctggtgctacaacaaacaacagaagctga |
152 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||| |
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| T |
37268551 |
gtttcaccgtctcattctgttgatttggttaagagcaggctgcaaaatattataaagaacccaaagaatagctggtgcaaccacaaataacagaagctga |
37268650 |
T |
|
| Q |
153 |
cccct |
157 |
Q |
| |
|
|||| |
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|
| T |
37268651 |
gccct |
37268655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 182; Significance: 4e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 190 - 423
Target Start/End: Original strand, 20580779 - 20581012
Alignment:
| Q |
190 |
ccatttcactagcaattgcatcttgtgttgatacaaaccctgaagctgctaacccacccccaagacctaaaccaattataactcctttatcgttacgcat |
289 |
Q |
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||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||| |
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| T |
20580779 |
ccatttcactagccattgcatcttgtgttgacacaaaccctgaagctgctaacccaccaccaagacccaaaccaatgataactcctttatcgttacgcat |
20580878 |
T |
|
| Q |
290 |
acggttgatttggttaagtgctggttgaagaatgttgtacagaacccaagcaatggctggaattaatggtaacaaaagtgctaaaccacggttggctgat |
389 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||| ||||||| |||| |||||| ||||| |
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| T |
20580879 |
acggttgatttggttaagtgctggttgaagaatgttgaacagaaccgaagctatggctggaattaatggtaacagaagtgcttaaccgcggttgtctgat |
20580978 |
T |
|
| Q |
390 |
gatccttctgctatttcagctatttgttgtgctg |
423 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |
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| T |
20580979 |
gatccttctgctatttcagctatctgttgtgctg |
20581012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 452 - 562
Target Start/End: Original strand, 20581011 - 20581121
Alignment:
| Q |
452 |
tgagaatattgcccctgctagtgctgttcctgctatggatgttgatagtttaatattttctgttgtgggaattttctttggaagaaggttcttgagagaa |
551 |
Q |
| |
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|||||||||||| |||||||||| ||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||| || ||| |
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| T |
20581011 |
tgagaatattgctcctgctagtgttgtccctgctatggaagttgatagtttaatgttttctgttgtgggaattttctttggaataaggttcttaagggaa |
20581110 |
T |
|
| Q |
552 |
atgagggaagt |
562 |
Q |
| |
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| ||| ||||| |
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| T |
20581111 |
aggagtgaagt |
20581121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 62 - 175
Target Start/End: Original strand, 39016975 - 39017088
Alignment:
| Q |
62 |
tctcattctgttgatttggttaagagcaggctgcaaaatattataaagaacccaaagaatagctggtgctacaacaaacaacagaagctgacccctgtta |
161 |
Q |
| |
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|||||| |||||||| ||||| |||||||||||||||||||| || || |||||||| ||||||||||| ||||||||||||||||| |||||||| |
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| T |
39016975 |
tctcatcctgttgatctggttgagagcaggctgcaaaatattgtacagcacccaaaggatagctggtgcaacaacaaacaacagaagtgttcccctgttg |
39017074 |
T |
|
| Q |
162 |
tcactaccagcagc |
175 |
Q |
| |
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||||| |||||||| |
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| T |
39017075 |
tcacttccagcagc |
39017088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 393 - 469
Target Start/End: Original strand, 39017300 - 39017376
Alignment:
| Q |
393 |
ccttctgctatttcagctatttgttgtgctgcaaaagctgcatcacaggttgagagtgttgagaatattgcccctgc |
469 |
Q |
| |
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|||||||||||||| ||||||||||| ||||| ||||| ||||| |||||| || | ||| |||||||| ||||| |
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| T |
39017300 |
ccttctgctatttctgctatttgttgagctgcgaaagccgcatcggaggttgcaagggatgaaaatattgctcctgc |
39017376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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