View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11550_high_6 (Length: 379)
Name: NF11550_high_6
Description: NF11550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11550_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 6 - 358
Target Start/End: Complemental strand, 11467372 - 11467015
Alignment:
| Q |
6 |
agagagaagaaagaatggaagaaactcatatatgatgcaggtttcagtagctacaagattactccaatatgtggcttcaagtctcttatagaagtttatc |
105 |
Q |
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| T |
11467372 |
agagaaaagaaagaatggaagaaactcatatatgatgcaggtttcagtagctacaagattactccaatatgtggcttcaagtctcttatagaagtttatc |
11467273 |
T |
|
| Q |
106 |
cttaattctaattagtagttgttgcaaatatgttatttacaaattcaataagtcaaatttgtaatgtttattgtttgtctttgcatcaaatgtttattgt |
205 |
Q |
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|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11467272 |
cttaattctaattaatagttgttgcaaataagttatttacaaattcaataagtcaaatttgtaatgtttattgtttgtctttgcatcaaatgtttattgt |
11467173 |
T |
|
| Q |
206 |
ttcctatgaaaggtgaatttctcaagattgtttattaaaagtattttgttgttcccaataggaa-----nnnnnnnnnnnatgaggtttcaaacagaaag |
300 |
Q |
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| T |
11467172 |
ttcctatgaaaggtgaatttctcaagattgtttattaaaagtattttg-tgttcccaataggaaatttttttttttttttatgaggtttcaaacagaaag |
11467074 |
T |
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| Q |
301 |
tggttagtttttgttgg-gagtaccgagagtaataatagactaaactattaaaaactca |
358 |
Q |
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||||||||||||||||| |||||| ||||||| |||||||||||| |||||||||||| |
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| T |
11467073 |
tggttagtttttgttggaaagtaccaagagtaaaaatagactaaaccattaaaaactca |
11467015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 6 - 358
Target Start/End: Original strand, 11524501 - 11524850
Alignment:
| Q |
6 |
agagagaagaaagaatggaagaaactcatatatgatgcaggtttcagtagctacaagattactccaatatgtggcttcaagtctcttatagaagtttatc |
105 |
Q |
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| T |
11524501 |
agagaaaagaaagaatggaagaaactcatctatgacgctggcttcagcagctacaagattactccaatatgtggcttcaagtctcttatagaagtttatc |
11524600 |
T |
|
| Q |
106 |
cttaattctaattagtagttgttgcaaatatgttatttacaaattcaataagtcaaatttgtaatgtttattgtttgtctttgcatcaaatgtttattgt |
205 |
Q |
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|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
11524601 |
cttaattctaattagtagttgttgcaaataagttatttgcaaattcaataagtcaaatttgtaatgtttattgtttgtctttgtatcaaatgtttattgt |
11524700 |
T |
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| Q |
206 |
ttcctatgaaaggtgaatttctcaagattgtttattaaaagtattttgttgttcccaataggaannnnnnnnnnnatgaggtttcaaacagaaagtggtt |
305 |
Q |
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| T |
11524701 |
ttcctatgaaaggtgaatttatcaagattgtttattaaaagtattttgttgttcccaataggta---ttttttttatgaggtttcaaacagaaagtggtt |
11524797 |
T |
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| Q |
306 |
agtttttgtt-gggagtaccgagagtaataatagactaaactattaaaaactca |
358 |
Q |
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| T |
11524798 |
agtttttgttggggagta-cgagagtaaaaatagactaaaccattaaaaactca |
11524850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 6 - 259
Target Start/End: Original strand, 11487827 - 11488080
Alignment:
| Q |
6 |
agagagaagaaagaatggaagaaactcatatatgatgcaggtttcagtagctacaagattactccaatatgtggcttcaagtctcttatagaagtttatc |
105 |
Q |
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||||| ||||||||||||||||||||||| ||||| || || ||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
11487827 |
agagaaaagaaagaatggaagaaactcatctatgacgctggcttcagcagctacaagattactccaatatgtggcttcaagtcactcatagaagtttatc |
11487926 |
T |
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| Q |
106 |
cttaattctaattagtagttgttgcaaatatgttatttacaaattcaataagtcaaatttgtaatgtttattgtttgtctttgcatcaaatgtttattgt |
205 |
Q |
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| T |
11487927 |
cctaattttaattagtagttgttgcaaataacttatttacaaatttaataagtcaaatttgtaatgtttattgttcttctttgcatcaaatgtttattgt |
11488026 |
T |
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| Q |
206 |
ttcctatgaaaggtgaatttctcaagattgtttattaaaagtattttgttgttc |
259 |
Q |
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||||||| ||| |||||||| ||||||| || |||||| || |||||||||| |
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| T |
11488027 |
ttcctatcaaacatgaatttccaaagattgctttttaaaaataatttgttgttc |
11488080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 11441604 - 11441498
Alignment:
| Q |
6 |
agagagaagaaagaatggaagaaactcatatatgatgcaggtttcagtagctacaagattactccaatatgtggcttcaagtctcttatagaagtttatc |
105 |
Q |
| |
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|||||||||||||||||| |||||||||||| || ||||| ||||| ||||| |||||||| || ||||| |||||||| ||| | || |||||||||| |
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| T |
11441604 |
agagagaagaaagaatgggagaaactcatattcgacgcaggcttcagcagctataagattacacctatatgcggcttcaaatctatcatcgaagtttatc |
11441505 |
T |
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| Q |
106 |
cttaatt |
112 |
Q |
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||||||| |
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| T |
11441504 |
cttaatt |
11441498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 11444480 - 11444374
Alignment:
| Q |
6 |
agagagaagaaagaatggaagaaactcatatatgatgcaggtttcagtagctacaagattactccaatatgtggcttcaagtctcttatagaagtttatc |
105 |
Q |
| |
|
|||||||||||||||||| ||||||| ||| || ||||| ||||| ||||| ||||||||||| ||||| |||||||||||| | || |||||||||| |
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| T |
11444480 |
agagagaagaaagaatgggagaaacttatactcgacgcaggcttcagcagctataagattactcctatatgcggcttcaagtctatcatcgaagtttatc |
11444381 |
T |
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| Q |
106 |
cttaatt |
112 |
Q |
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||||||| |
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| T |
11444380 |
cttaatt |
11444374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 6 - 112
Target Start/End: Original strand, 11508286 - 11508392
Alignment:
| Q |
6 |
agagagaagaaagaatggaagaaactcatatatgatgcaggtttcagtagctacaagattactccaatatgtggcttcaagtctcttatagaagtttatc |
105 |
Q |
| |
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|||||||||||||||||| |||||||||||| || ||||||||||| ||||| |||||||| || ||||| || ||||||||||| || ||||| |||| |
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| T |
11508286 |
agagagaagaaagaatgggagaaactcatattcgacgcaggtttcagcagctataagattacacctatatgcggtttcaagtctctcatcgaagtatatc |
11508385 |
T |
|
| Q |
106 |
cttaatt |
112 |
Q |
| |
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| ||||| |
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| T |
11508386 |
cataatt |
11508392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 6 - 112
Target Start/End: Original strand, 11548628 - 11548734
Alignment:
| Q |
6 |
agagagaagaaagaatggaagaaactcatatatgatgcaggtttcagtagctacaagattactccaatatgtggcttcaagtctcttatagaagtttatc |
105 |
Q |
| |
|
|||||||||||||||||| ||||||| ||| || ||||| ||||| ||||| ||||||||||| ||||| |||||||||||| | || |||||||||| |
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| T |
11548628 |
agagagaagaaagaatgggagaaacttatactcgacgcaggcttcagcagctataagattactcctatatgcggcttcaagtctatcatcgaagtttatc |
11548727 |
T |
|
| Q |
106 |
cttaatt |
112 |
Q |
| |
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||||||| |
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| T |
11548728 |
cttaatt |
11548734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 34785114 - 34785210
Alignment:
| Q |
16 |
aagaatggaagaaactcatatatgatgcaggtttcagtagctacaagattactccaatatgtggcttcaagtctcttatagaagtttatccttaatt |
112 |
Q |
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|||||||| | ||||||||||||||||||||||| || |||||||| ||||| || || | ||||||||||||||| | ||||||||||||||||| |
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| T |
34785114 |
aagaatgggaaaaactcatatatgatgcaggttttagcagctacaaaattacccccatttctggcttcaagtctctcgttgaagtttatccttaatt |
34785210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 34776948 - 34777040
Alignment:
| Q |
16 |
aagaatggaagaaactcatatatgatgcaggtttcagtagctacaagattactccaatatgtggcttcaagtctcttatagaagtttatcctt |
108 |
Q |
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|||||||| | ||||||||||||||||||||||| || |||||||| ||||| || || | |||||||||||| || || ||||||||||||| |
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| T |
34776948 |
aagaatgggaaaaactcatatatgatgcaggttttagcagctacaaaattacccccatttctggcttcaagtcactcatcgaagtttatcctt |
34777040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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