View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11550_high_9 (Length: 307)
Name: NF11550_high_9
Description: NF11550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11550_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 11 - 291
Target Start/End: Original strand, 16792769 - 16793055
Alignment:
| Q |
11 |
cagagacaaataaaaattaaatttaaatgtt-gagagaatttttaaaattctatgaattggaagattacatttccaaattttaaaattgaaccaaaatga |
109 |
Q |
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| T |
16792769 |
cagagacaaataaacattaaatttaaatgtttgagagaattttaaaaattctatgaattggaagattacatttccaaattttaaaattgaaccaaaatga |
16792868 |
T |
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| Q |
110 |
tgaatcaccccaaaataagagtcaaaactcaaaagtttgtttaaaccaaaacattaatccatgatcaaaccatcaaaataatccacccataggattccaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16792869 |
tgaatcaccccaaaataagagtcaaaactcaaaagtttgtttaaaccaaaacattaatccatgatcaaaccatcaaaataatccacccataggattccaa |
16792968 |
T |
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| Q |
210 |
c-----acgagaccatattaataaactcatttaattgtcaaactaataagaaatctcaacccaaagcaacaaaattcatcaatactc |
291 |
Q |
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| T |
16792969 |
cacgagacgagaccatattaataaactcatttaattgtcaaactaataagaaatctcaacccaaagcaacaaaattcatcaatactc |
16793055 |
T |
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