View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11550_low_1 (Length: 702)
Name: NF11550_low_1
Description: NF11550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11550_low_1 |
 | |
|
| [»] scaffold0019 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 627; Significance: 0; HSPs: 26)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 627; E-Value: 0
Query Start/End: Original strand, 14 - 684
Target Start/End: Complemental strand, 679620 - 678948
Alignment:
| Q |
14 |
atggacatcactaagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
679620 |
atggacatcactaagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggat |
679521 |
T |
|
| Q |
114 |
gattattggacaagaatagagggcatcccacattatttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagattc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
679520 |
gattattggacaagaatagagggcatcccacattatttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagattc |
679421 |
T |
|
| Q |
214 |
tttcaacacttgctcttttgattatcatagtatcatatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaa |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
679420 |
tttcaacacttgctcttttgattatcatagtatcatatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaa |
679321 |
T |
|
| Q |
314 |
atatagttatatgcctcattttcannnnnnnnn--ctttctagttcttagaattagaagaatgctgcgtatatttgagtattttcctagacaggtaaaag |
411 |
Q |
| |
|
|| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
679320 |
atgtagttatatgcctcattttcatttttttttttctttctagttctgagaattagaagaatgctgcgtatatttgagtattttcctagacaggtaaaag |
679221 |
T |
|
| Q |
412 |
gtgaggttgttaacagaatgtcaacatgtttatccttatatatgagtgcttgggtatgtggcttagtgctcatcctagtcgactgctctatagggcttcc |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
679220 |
gtgaggttgttaacagaatgtcaacatgtttatccttatatatgagtgcttgggtatgtggcttagtgctcatcctagtcgactgctctatagggcttcc |
679121 |
T |
|
| Q |
512 |
caccatacatgttagtcatcaattttctaaagaaattaacatgttattattctcgtggtaactttatgtgttgttagtgctaaattaatcatattgtaca |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
679120 |
caccatacatgttagtcatcaattttctaaagaaattaacatgttattattctcgtggtaactttatgtgttgttagtgctaaattaatcatattgtaca |
679021 |
T |
|
| Q |
612 |
ttaagttttatattttgtacaggatttctcagcaagtgatcttgtacaggatttcttgtgtgggacaattaag |
684 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
679020 |
ttaagttttatattttgtacaggatttctcagcaagtgatcttgtacaggatttcttgtgtgggacaattaag |
678948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 148 - 628
Target Start/End: Complemental strand, 751290 - 750811
Alignment:
| Q |
148 |
atttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagattctttcaacacttgctcttttgattatcatagtatc |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
751290 |
atttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagattctttcaacacttgctcttttgattatcatagtatc |
751191 |
T |
|
| Q |
248 |
atatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaaatatagttatatgcctcattttcannnnnnnnnc |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
751190 |
atatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaaatatagttctatgcctcattttcatttattttt- |
751092 |
T |
|
| Q |
348 |
tttctagttcttagaattagaagaatgctgcgtatatttgagtattttcctagacaggtaaaaggtgaggttgttaacagaatgtcaacatgtttatcct |
447 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
751091 |
tttctagttcttagaattagaagaatgctgcgtatatttgagtattttcctagacaggtaaaaggtgaggttgttaacagaatgtcaacatgtttatcct |
750992 |
T |
|
| Q |
448 |
tatatatgagtgcttgggtatgtggcttagtgctcatcctagtcgactgctctatagggcttcccaccatacatgttagtcatcaattttctaaagaaat |
547 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
750991 |
tatatatgagtgcttgggtatgtggcttagtgctcatcctagtcgactgctctatagggcttcccaccatacatgttagtcatcaattttctaaagaaat |
750892 |
T |
|
| Q |
548 |
taacatgttattattctcgtggtaactttatgtgttgttagtgctaaattaatcatattgtacattaagttttatattttg |
628 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
750891 |
taacatgttattattctcgtggtaactttatgtgttgttagtgctaaattaatcatattgtacattaagttttatattttg |
750811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 150 - 621
Target Start/End: Original strand, 2632504 - 2632953
Alignment:
| Q |
150 |
ttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagat----tctttcaacacttgctcttttgattatcatagta |
245 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| || | |||||||||||||||| | ||||||| |||| | ||||| ||||||||||| |
|
|
| T |
2632504 |
ttcaattctccaaaccctgcagttttaaaatcagcacatt----gttttgtgaagatcaggtcttttctttcaccactcgttctttgtattatcatagt- |
2632598 |
T |
|
| Q |
246 |
tcatatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaaatatagttatatgcctcattttcannnnnnnn |
345 |
Q |
| |
|
|||| ||||||||||||| | || |||||| | ||||||||| | ||||||||||||||||| || | | || |||||||| |||||| |
|
|
| T |
2632599 |
-catacacttcacatgtgtgtgaataattcata---tttagctttttgaaacttatagtgagttttaa-tgcaattctatgcctcgttttcatt------ |
2632687 |
T |
|
| Q |
346 |
nctttctagttcttagaattagaagaatgctgcgtatatttgagtattttcctagacaggtaaaaggtgaggttgttaacagaatgtcaacatgtttatc |
445 |
Q |
| |
|
||||| ||| | ||||||||||||||||||| ||||||||||||||||| ||| | ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2632688 |
--tttcttgttttgagaattagaagaatgctgc--atatttgagtattttccaagataatgaaaaggtgaggttgttaacagaatggaaacatgtttatc |
2632783 |
T |
|
| Q |
446 |
cttatatatgagtgcttgggtatgtggcttagtgctcatcctagtcgactgctctatagggcttcccaccatacatgttagtcatcaattttctaaagaa |
545 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| ||||| ||||||||| ||| ||||||| |||||||||||||||||||||||| |||| || |
|
|
| T |
2632784 |
cttgc----gagtgcttgggtatgtggcttagtgctcattctagttgactgctctgtagagcttccc-ccatacatgttagtcatcaattttttaaacaa |
2632878 |
T |
|
| Q |
546 |
attaacatg-ttattattctcgtggtaactttatgtgttgttagtgctaaattaatcatattgtacattaagtttta |
621 |
Q |
| |
|
||||||||| |||||| | || ||||||||| ||||||| ||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
2632879 |
attaacatgtttattaatttcttggtaactt--tgtgttgctagtgctgaattaatcatattgtacattcagtttta |
2632953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 14 - 150
Target Start/End: Complemental strand, 747538 - 747402
Alignment:
| Q |
14 |
atggacatcactaagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| | ||||||||||||||| | |
|
|
| T |
747538 |
atggacatcactaagctttggatatgatcatttcattgataattataaggtcgttgttgtttcttcagaaaaagaggttttttttaatactttgggggct |
747439 |
T |
|
| Q |
114 |
gattattggacaagaatagagggcatcccacattatt |
150 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |
|
|
| T |
747438 |
gattattggaaaagaatagagggcatcccacattatt |
747402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 466 - 628
Target Start/End: Complemental strand, 9564816 - 9564654
Alignment:
| Q |
466 |
tatgtggcttagtgctcatcctagtcgactgctctatagggcttcccaccatacatgttagtcatcaattttctaaagaaattaacatgttattattctc |
565 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||| |||||| | || |
|
|
| T |
9564816 |
tatgtggcttagtgttcatcctagttgactgctctatagagcttccctccatacatgttagtcataaattttctaaagaaattaacattttattaatttc |
9564717 |
T |
|
| Q |
566 |
gtggtaactttatgtgttgttagtgctaaattaatcatattgtacattaagttttatattttg |
628 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||||| |
|
|
| T |
9564716 |
ttgggaactttatgtgttgttaatgctaaattaatcatatagtacaataagttttttattttg |
9564654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 410 - 620
Target Start/End: Complemental strand, 7317545 - 7317339
Alignment:
| Q |
410 |
aggtgaggttgttaacagaatgtcaacatgtttatccttatatatgagtgcttgggtatgtggcttagtgctcatcctagtcgactgctctatagggctt |
509 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |||| ||||||||| || ||| |||||| ||||||||||| | | ||||| || ||| |
|
|
| T |
7317545 |
aggtgaggttgttaacagaatatcaacatgtttatcattatc----agtgcttggataggtgacttagtactcatcctagttgcccgctctgtacaactt |
7317450 |
T |
|
| Q |
510 |
cccaccatacatgttagtcatcaattttctaaagaaattaacatgttattattctcgtggtaactttatgtgttgttagtgctaaattaatcatattgta |
609 |
Q |
| |
|
||| | || |||||||||||||||| |||||||||| |||||||||||||| | || ||| ||||||||||||| ||||||| || ||||||||| ||| |
|
|
| T |
7317449 |
ccctctattcatgttagtcatcaatcttctaaagaatttaacatgttattaatttcttggcaactttatgtgtttctagtgctgaaataatcatatagta |
7317350 |
T |
|
| Q |
610 |
cattaagtttt |
620 |
Q |
| |
|
||| |||||| |
|
|
| T |
7317349 |
tattcagtttt |
7317339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 481 - 605
Target Start/End: Complemental strand, 668075 - 667951
Alignment:
| Q |
481 |
tcatcctagtcgactgctctatagggcttcccaccatacatgttagtcatcaattttctaaagaaattaacatgttattattctcgtggtaactttatgt |
580 |
Q |
| |
|
|||||||||| ||||||| ||| ||||||| ||||||||||||||||||||||||||||| || ||||||| |||||| | || ||| || ||||||| |
|
|
| T |
668075 |
tcatcctagtttcctgctctgtagagcttccctccatacatgttagtcatcaattttctaaacaatttaacattttattaatttcttggcaattttatgt |
667976 |
T |
|
| Q |
581 |
gttgttagtgctaaattaatcatat |
605 |
Q |
| |
|
|||||||||||| || ||||||||| |
|
|
| T |
667975 |
gttgttagtgctgaaataatcatat |
667951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 14 - 141
Target Start/End: Original strand, 2501817 - 2501944
Alignment:
| Q |
14 |
atggacatcactaagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||| || ||| | ||||||||||||||| | |
|
|
| T |
2501817 |
atggacatcactaagctttggatatgatcatttcattgataattataaggtcattgttgtttctgacgaaaatgaagttagggttaatactttggggact |
2501916 |
T |
|
| Q |
114 |
gattattggacaagaatagagggcatcc |
141 |
Q |
| |
|
|||||||||| || ||||||| ||||| |
|
|
| T |
2501917 |
gattattggagaaagatagaggacatcc |
2501944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 349 - 439
Target Start/End: Complemental strand, 9564909 - 9564819
Alignment:
| Q |
349 |
ttctagttcttagaattagaagaatgctgcgtatatttgagtattttcctagacaggtaaaaggtgaggttgttaacagaatgtcaacatg |
439 |
Q |
| |
|
|||| ||||| |||||||||||||||||| | |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9564909 |
ttctggttctgagaattagaagaatgctgtatgtatttgagtattttccaagacagtgaaaaggtgaggttgttaacagaatgtcaacatg |
9564819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 27 - 143
Target Start/End: Complemental strand, 7324803 - 7324687
Alignment:
| Q |
27 |
agctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaa |
126 |
Q |
| |
|
|||||||| || |||||||| |||||||| ||||||| ||||||||||||| |||| | ||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
7324803 |
agctttgggtacgatcatttaattgataactataaggtcattgttgtttcttccaaaaataaagttagtgttaatactttggggactgattattggacaa |
7324704 |
T |
|
| Q |
127 |
gaatagagggcatccca |
143 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
7324703 |
gaatagaggacatccca |
7324687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 2491753 - 2491871
Alignment:
| Q |
25 |
taagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggac |
124 |
Q |
| |
|
|||||||||| |||||||||||||||||| | ||||||| ||| ||||||||| ||||| || ||| ||||| ||||||||||| |||||||||||| |
|
|
| T |
2491753 |
taagctttgggtatgatcatttcattgatgattataaggtcattggtgtttcttccgaaaatgaagttagtgtttatactttggggactgattattggac |
2491852 |
T |
|
| Q |
125 |
aagaatagagggcatccca |
143 |
Q |
| |
|
|||||| ||| ||||||| |
|
|
| T |
2491853 |
aagaatcaaggacatccca |
2491871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 9595019 - 9594898
Alignment:
| Q |
25 |
taagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggac |
124 |
Q |
| |
|
||||||| || |||||||||||||||||||| ||||||| ||| | || |||| |||| || |||| |||| ||||||||||| |||||||||||| |
|
|
| T |
9595019 |
taagcttcgggtatgatcatttcattgataagtataaggtcattgattttgcttccaaaaatgatgtttttgtttatactttggggactgattattggac |
9594920 |
T |
|
| Q |
125 |
aagaatagagggcatcccacat |
146 |
Q |
| |
|
||||||||||| |||||||||| |
|
|
| T |
9594919 |
aagaatagaggacatcccacat |
9594898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 636 - 684
Target Start/End: Complemental strand, 750174 - 750126
Alignment:
| Q |
636 |
tttctcagcaagtgatcttgtacaggatttcttgtgtgggacaattaag |
684 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
750174 |
tttctcagcaagtgatcttgtacaggatttcttgtgtgggacaattaag |
750126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 524 - 620
Target Start/End: Complemental strand, 2642618 - 2642522
Alignment:
| Q |
524 |
tagtcatcaattttctaaagaaattaacatgttattattctcgtggtaactttatgtgttgttagtgctaaattaatcatattgtacattaagtttt |
620 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||| | || |||||||||||| ||| ||||||| |||||||||||| ||||||| |||||| |
|
|
| T |
2642618 |
tagtcattagttttctaaagaaattaacatgttattaatttcttggtaactttattccttgctagtgctgaattaatcatatagtacattcagtttt |
2642522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 25 - 143
Target Start/End: Complemental strand, 9566212 - 9566094
Alignment:
| Q |
25 |
taagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggac |
124 |
Q |
| |
|
|||| ||||| |||||||||||||||||||| ||||| | || ||||||| || |||| || ||| ||||| ||||||||||| |||||||||||| |
|
|
| T |
9566212 |
taagttttgggtatgatcatttcattgataattataagctcatttctgtttctacaaaaaatgaagttagtgtttatactttggggactgattattggac |
9566113 |
T |
|
| Q |
125 |
aagaatagagggcatccca |
143 |
Q |
| |
|
||||||||||| ||||||| |
|
|
| T |
9566112 |
aagaatagaggacatccca |
9566094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 22 - 131
Target Start/End: Complemental strand, 2644742 - 2644633
Alignment:
| Q |
22 |
cactaagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattg |
121 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||| ||||||| || |||||||| ||||| || ||| | ||||||||||||||| ||||||||| |
|
|
| T |
2644742 |
cactaagctttggatatgatcacttcgttgataattataaggtcattattgtttctgacgaaaatgaagttagggttaatactttggggactgattattg |
2644643 |
T |
|
| Q |
122 |
gacaagaata |
131 |
Q |
| |
|
|||||||||| |
|
|
| T |
2644642 |
gacaagaata |
2644633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 14 - 131
Target Start/End: Complemental strand, 2659537 - 2659420
Alignment:
| Q |
14 |
atggacatcactaagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggat |
113 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||| |||||||| |||||||||||| ||||| |||||| | || ||||||||||||||||| | |
|
|
| T |
2659537 |
atggtcattactaagctttggatatgatcattttattgataattataaggttgttgcccattctttcaaaaaagtgattagtgttaatactttggggact |
2659438 |
T |
|
| Q |
114 |
gattattggacaagaata |
131 |
Q |
| |
|
|||||||||| ||||||| |
|
|
| T |
2659437 |
gattattggagaagaata |
2659420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 506 - 587
Target Start/End: Complemental strand, 7339829 - 7339748
Alignment:
| Q |
506 |
gcttcccaccatacatgttagtcatcaattttctaaagaaattaacatgttattattctcgtggtaactttatgtgttgtta |
587 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||||| |||||| |||||| | || | |||||||||||||||||| |
|
|
| T |
7339829 |
gcttccctccatacatattagtcatcaattttctaaagaaagtaacattttattaatttcttattaactttatgtgttgtta |
7339748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 25 - 134
Target Start/End: Complemental strand, 7443378 - 7443269
Alignment:
| Q |
25 |
taagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggac |
124 |
Q |
| |
|
|||| ||||| |||||||||||||||||||| |||| ||||||| | ||||||| || | ||||||| ||||||| |||||||| ||||||||||| |
|
|
| T |
7443378 |
taagttttgggtatgatcatttcattgataattataaagttgttgctatttcttccaaatatgaggtttttgttaatgctttggggactgattattggag |
7443279 |
T |
|
| Q |
125 |
aagaatagag |
134 |
Q |
| |
|
|||||||||| |
|
|
| T |
7443278 |
aagaatagag |
7443269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 2474776 - 2474895
Alignment:
| Q |
25 |
taagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttggggga-tgattattgga |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||| |||| ||||||| |||| || ||| ||||||||||||| ||| ||||||||||| |
|
|
| T |
2474776 |
taagctttggatatgatcatttcattgataattacaaggccattgtattttcttccaaaaatgaagttagtgttaatacttttaaggactgattattgga |
2474875 |
T |
|
| Q |
124 |
caagaatagagggcatccca |
143 |
Q |
| |
|
|||||||||||| ||||||| |
|
|
| T |
2474876 |
caagaatagaggacatccca |
2474895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 143
Target Start/End: Complemental strand, 9562342 - 9562235
Alignment:
| Q |
36 |
tatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggacaagaatagagg |
135 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||| | |||| || ||| ||||| ||||||||||| ||||||||||| |||||||||| |
|
|
| T |
9562342 |
tatgatcatttcattgataattataaggtcattgttgtttctaccaaaaatgaagttagtgtttatactttggggactgattattggaagagaatagagg |
9562243 |
T |
|
| Q |
136 |
gcatccca |
143 |
Q |
| |
|
||||||| |
|
|
| T |
9562242 |
acatccca |
9562235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 25 - 135
Target Start/End: Complemental strand, 754998 - 754888
Alignment:
| Q |
25 |
taagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggac |
124 |
Q |
| |
|
|||||||||| ||||||||||||||| |||| | ||||| || ||||||| || |||| || ||||||||| |||| |||||| |||||||||||| |
|
|
| T |
754998 |
taagctttgggtatgatcatttcattcataattacaaggtcatttctgtttctacaaaaaatgaagtttgtgtttatacattggggactgattattggac |
754899 |
T |
|
| Q |
125 |
aagaatagagg |
135 |
Q |
| |
|
||||||||||| |
|
|
| T |
754898 |
aagaatagagg |
754888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 123
Target Start/End: Complemental strand, 7334658 - 7334560
Alignment:
| Q |
25 |
taagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattgga |
123 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||| |||| ||||||| | ||||| | ||| ||||| |||||||||| ||||||||||| |
|
|
| T |
7334658 |
taagcttcggatatgatcatttcattgataattataaggtcgttgctgtttctgtaaaaaaaaaagttagtgtttatactttgggaactgattattgga |
7334560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 25 - 150
Target Start/End: Original strand, 2631013 - 2631138
Alignment:
| Q |
25 |
taagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggac |
124 |
Q |
| |
|
|||||||||| |||||| |||||||||||| ||||||| ||| ||||||||| |||| || |||| | || ||||||| ||| ||||||||||| |
|
|
| T |
2631013 |
taagctttgggtatgattgtttcattgataagtataaggtcattgctgtttcttccaaaaatgaagtttttctttatactttagggactgattattggaa |
2631112 |
T |
|
| Q |
125 |
aagaatagagggcatcccacattatt |
150 |
Q |
| |
|
||||||||| | ||||||| |||||| |
|
|
| T |
2631113 |
aagaatagacgacatcccatattatt |
2631138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 2476308 - 2476426
Alignment:
| Q |
25 |
taagctttggatatgatcatttcattgataaagataaggttgttgttgtttcttcagaaaaagaggtttgtgttaatactttgggggatgattattggac |
124 |
Q |
| |
|
|||||||||| |||||||||| |||||||| | ||||| || |||||||| |||| || ||| ||||||||||||||||| |||||||||||| |
|
|
| T |
2476308 |
taagctttgggtatgatcattctattgataactacaaggtcattcttgtttctgacaaaaacgaagttagtgttaatactttggggactgattattggac |
2476407 |
T |
|
| Q |
125 |
aagaatagagggcatccca |
143 |
Q |
| |
|
|||||| ||| ||||||| |
|
|
| T |
2476408 |
aagaatgcaggacatccca |
2476426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 527 - 605
Target Start/End: Complemental strand, 2650136 - 2650058
Alignment:
| Q |
527 |
tcatcaattttctaaagaaattaacatgttattattctcgtggtaactttatgtgttgttagtgctaaattaatcatat |
605 |
Q |
| |
|
||||||||||||||||||| || ||||||||||| | || ||||||||||||| ||| | ||||| |||| ||||||| |
|
|
| T |
2650136 |
tcatcaattttctaaagaagtttacatgttattaatttcttggtaactttatgccttgctggtgcttaatttatcatat |
2650058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 407 - 605
Target Start/End: Original strand, 1360 - 1554
Alignment:
| Q |
407 |
aaaaggtgaggttgttaacagaatgtcaacatgtttatccttatatatgagtgcttgggtatgtggcttagtgctcatcctagtc-gactgctctatagg |
505 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||| ||| | || |||| ||||||||||||||||||||||||| | | || | ||| |
|
|
| T |
1360 |
aaaaggtgtggttgttaacagaatgtcaacatatttatcattac----gggtacttgcatatgtggcttagtgctcatcctagtttgcccactttctaga |
1455 |
T |
|
| Q |
506 |
gcttcccaccatacatgttagtcatcaattttctaaagaaattaacatgttattattctcgtggtaactttatgtgttgttagtgctaaattaatcatat |
605 |
Q |
| |
|
||||||| | |||| ||||||| ||||||||||||||||| ||||||| |||||| | || ||||||||| || |||| ||| ||| |||||||||||| |
|
|
| T |
1456 |
gcttccctctatacctgttagtaatcaattttctaaagaatttaacatattattaatttcttggtaacttcatatgtt-ttattgcggaattaatcatat |
1554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 518 - 558
Target Start/End: Complemental strand, 2289947 - 2289907
Alignment:
| Q |
518 |
acatgttagtcatcaattttctaaagaaattaacatgttat |
558 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||| |||| |
|
|
| T |
2289947 |
acatgttagtaattaattttctaaagaaattaacatattat |
2289907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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