View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11550_low_11 (Length: 280)

Name: NF11550_low_11
Description: NF11550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11550_low_11
NF11550_low_11
[»] chr8 (22 HSPs)
chr8 (3-251)||(3240090-3240339)
chr8 (9-59)||(21237702-21237752)
chr8 (4-74)||(24186786-24186858)
chr8 (4-72)||(36948565-36948633)
chr8 (9-60)||(23230550-23230601)
chr8 (4-60)||(8443649-8443704)
chr8 (13-60)||(24099399-24099446)
chr8 (21-60)||(43834144-43834183)
chr8 (4-54)||(1239531-1239581)
chr8 (4-66)||(27498491-27498553)
chr8 (3-60)||(14585605-14585661)
chr8 (3-60)||(18890833-18890889)
chr8 (11-60)||(20559880-20559929)
chr8 (11-60)||(20571442-20571491)
chr8 (18-59)||(26469338-26469379)
chr8 (4-57)||(40619200-40619253)
chr8 (4-60)||(7883368-7883423)
chr8 (10-54)||(15344217-15344261)
chr8 (10-54)||(15433282-15433326)
chr8 (10-54)||(15524586-15524630)
chr8 (4-60)||(20553373-20553429)
chr8 (4-60)||(40211432-40211488)
[»] chr2 (19 HSPs)
chr2 (3-159)||(12648053-12648208)
chr2 (9-152)||(29574769-29574910)
chr2 (9-59)||(24461351-24461401)
chr2 (3-74)||(43397249-43397320)
chr2 (11-72)||(19596013-19596073)
chr2 (4-59)||(4904275-4904330)
chr2 (14-60)||(14955436-14955482)
chr2 (3-60)||(36691788-36691844)
chr2 (4-60)||(11985360-11985416)
chr2 (4-60)||(29279700-29279756)
chr2 (9-60)||(31128914-31128965)
chr2 (122-160)||(18107983-18108021)
chr2 (4-66)||(31788364-31788426)
chr2 (3-60)||(6359006-6359063)
chr2 (9-70)||(16261268-16261328)
chr2 (3-59)||(3308853-3308908)
chr2 (4-60)||(4041724-4041780)
chr2 (4-60)||(4099017-4099073)
chr2 (4-60)||(38445080-38445136)
[»] scaffold0009 (1 HSPs)
scaffold0009 (10-159)||(58215-58363)
[»] chr5 (16 HSPs)
chr5 (3-60)||(10332680-10332737)
chr5 (4-73)||(8985062-8985132)
chr5 (4-60)||(11977066-11977122)
chr5 (9-60)||(8096632-8096683)
chr5 (4-60)||(6216802-6216858)
chr5 (4-60)||(14726591-14726647)
chr5 (4-60)||(24229914-24229970)
chr5 (10-60)||(7036131-7036181)
chr5 (4-74)||(8088342-8088412)
chr5 (4-66)||(13007126-13007188)
chr5 (3-60)||(2979442-2979498)
chr5 (118-159)||(8985180-8985221)
chr5 (11-60)||(15571389-15571438)
chr5 (11-60)||(26878215-26878264)
chr5 (3-60)||(28541042-28541098)
chr5 (3-60)||(39567198-39567254)
[»] chr3 (19 HSPs)
chr3 (3-159)||(50194412-50194567)
chr3 (3-60)||(29921956-29922013)
chr3 (3-60)||(29971109-29971166)
chr3 (4-58)||(12947410-12947464)
chr3 (4-58)||(35175304-35175358)
chr3 (4-72)||(33579759-33579827)
chr3 (4-53)||(44804934-44804983)
chr3 (4-60)||(36461560-36461616)
chr3 (4-60)||(47896055-47896111)
chr3 (118-159)||(29921857-29921898)
chr3 (118-159)||(29971010-29971051)
chr3 (3-60)||(53508124-53508181)
chr3 (4-60)||(20987928-20987984)
chr3 (9-60)||(42460650-42460700)
chr3 (4-51)||(52116140-52116187)
chr3 (11-60)||(54148892-54148941)
chr3 (28-60)||(7887562-7887594)
chr3 (4-60)||(43488719-43488775)
chr3 (4-60)||(52923246-52923302)
[»] chr7 (18 HSPs)
chr7 (3-60)||(41553566-41553623)
chr7 (3-60)||(41553911-41553968)
chr7 (3-60)||(41554256-41554313)
chr7 (9-60)||(35665266-35665317)
chr7 (3-60)||(28476126-28476182)
chr7 (4-60)||(37837588-37837644)
chr7 (4-60)||(47590217-47590273)
chr7 (9-60)||(48061329-48061380)
chr7 (9-59)||(12141441-12141491)
chr7 (4-94)||(24350974-24351063)
chr7 (14-74)||(1749284-1749343)
chr7 (3-59)||(5078524-5078579)
chr7 (12-72)||(19404892-19404952)
chr7 (27-59)||(26583644-26583676)
chr7 (4-60)||(30756948-30757004)
chr7 (4-60)||(34899736-34899792)
chr7 (4-60)||(39171720-39171776)
chr7 (4-60)||(40993088-40993144)
[»] chr6 (15 HSPs)
chr6 (9-74)||(30493420-30493485)
chr6 (13-74)||(28981067-28981128)
chr6 (11-96)||(22571358-22571442)
chr6 (9-97)||(26588602-26588689)
chr6 (11-59)||(32191868-32191916)
chr6 (4-66)||(34018459-34018521)
chr6 (4-94)||(3913703-3913794)
chr6 (8-65)||(11321602-11321659)
chr6 (3-60)||(30776570-30776626)
chr6 (4-59)||(1933827-1933882)
chr6 (23-60)||(1523310-1523347)
chr6 (4-49)||(7976311-7976355)
chr6 (3-60)||(8102624-8102680)
chr6 (13-97)||(14801074-14801158)
chr6 (4-60)||(33053297-33053353)
[»] chr4 (26 HSPs)
chr4 (4-72)||(47158139-47158207)
chr4 (13-60)||(9713831-9713878)
chr4 (9-60)||(9643304-9643355)
chr4 (28-90)||(28857272-28857334)
chr4 (4-54)||(51888346-51888396)
chr4 (13-58)||(4937757-4937802)
chr4 (9-74)||(22038935-22039000)
chr4 (4-60)||(13634039-13634095)
chr4 (4-60)||(26633800-26633856)
chr4 (9-60)||(5119263-5119314)
chr4 (13-60)||(9634598-9634645)
chr4 (9-60)||(22558598-22558649)
chr4 (4-59)||(29961054-29961109)
chr4 (4-58)||(2520703-2520757)
chr4 (3-41)||(42032653-42032691)
chr4 (4-54)||(47320531-47320581)
chr4 (11-60)||(22300768-22300817)
chr4 (15-72)||(31359893-31359950)
chr4 (10-51)||(33920984-33921025)
chr4 (14-59)||(37188694-37188739)
chr4 (15-72)||(38166373-38166430)
chr4 (14-59)||(52978749-52978794)
chr4 (4-60)||(21686370-21686426)
chr4 (28-60)||(33332756-33332788)
chr4 (4-60)||(35348229-35348284)
chr4 (18-94)||(36204525-36204601)
[»] chr1 (20 HSPs)
chr1 (10-73)||(47132793-47132856)
chr1 (9-57)||(12635076-12635124)
chr1 (3-74)||(15492184-15492254)
chr1 (4-74)||(44543163-44543233)
chr1 (3-60)||(37720250-37720306)
chr1 (3-59)||(16161739-16161794)
chr1 (4-60)||(23291772-23291828)
chr1 (11-60)||(1742187-1742236)
chr1 (4-60)||(13144941-13144997)
chr1 (4-60)||(21947747-21947803)
chr1 (12-60)||(32679237-32679285)
chr1 (4-60)||(49626816-49626872)
chr1 (9-60)||(9341630-9341681)
chr1 (9-60)||(29738770-29738821)
chr1 (11-57)||(31918899-31918945)
chr1 (118-156)||(32679342-32679380)
chr1 (3-97)||(36775846-36775938)
chr1 (3-60)||(13075765-13075821)
chr1 (4-60)||(7337792-7337848)
chr1 (4-72)||(8212039-8212107)
[»] scaffold0136 (2 HSPs)
scaffold0136 (9-72)||(10175-10238)
scaffold0136 (4-60)||(37950-38006)
[»] scaffold0603 (1 HSPs)
scaffold0603 (4-60)||(7619-7675)
[»] scaffold0445 (1 HSPs)
scaffold0445 (4-60)||(1247-1303)
[»] scaffold0127 (1 HSPs)
scaffold0127 (4-60)||(15395-15451)
[»] scaffold0017 (1 HSPs)
scaffold0017 (4-60)||(32877-32933)


Alignment Details
Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 3 - 251
Target Start/End: Complemental strand, 3240339 - 3240090
Alignment:
Q  3 gaaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaaggaaatgaaaaaaga-atacggatgggtgattctagatcnnnn 101  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | || | |||||||||||||||||         
T  3240339 gaaaaaacacaaaagaaaacacttgatatatgtggaaatcacttatttagattgaaaggaaatgaaaaaaaagatgcagatgggtgattctagataaaaa 3240240  T
Q  102 nnntgatctaaaactgcccctcctcaacgactgaaagagaaagaaaacttagagagaaattgttggtaaagaattgtagagagctgtgatgaatgcttac 201  Q
       ||| ||||||   ||||||||||||||| | ||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||| |||||||    
T  3240239 aaatgacctaaaatcacccctcctcaacgaccggaagagaaagaaaacttagagaaaaattcttggtaaagaattgtagagagctgtgttgattgcttac 3240140  T
Q  202 gttcaaattttaaatgcaaatgcattttttcagttgttgtatgttagtga 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3240139 gttcaaattttaaatgcaaatgcattttttcagttgttgtatgttagtga 3240090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 21237752 - 21237702
Alignment:
Q  9 acacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaa 59  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  21237752 acacaaaggaaaacacttgatatatttggaaatcacttatttagattgaaa 21237702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 24186786 - 24186858
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaaggaa--atgaaaaaaga 74  Q
    |||| ||||||||| ||| |||||||||||||| |||||||||||||||||| |||| ||  |||||||||||    
T  24186786 aaaacacacaaaagcaaaaacttgatatatatgaaaatcacttatttagatttaaagaaaagatgaaaaaaga 24186858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 36948565 - 36948633
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaaggaaatgaaaaaa 72  Q
    |||| ||||||||| ||| | |||||||||||| ||| ||||||||||||||||||| |||||| ||||    
T  36948565 aaaaaacacaaaaggaaaaatttgatatatatgaaaaccacttatttagattgaaagaaaatgagaaaa 36948633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 23230601 - 23230550
Alignment:
Q  9 acacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    ||||||||||||| |||||||| ||||| ||| |||||||||||||||||||    
T  23230601 acacaaaagaaaaaacttgatagatatgaaaaccacttatttagattgaaag 23230550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 8443649 - 8443704
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    |||| |||||||||||||| || ||||||| |||||||||||||||||||| |||||    
T  8443649 aaaaaacacaaaagaaaac-ctggatatatgtggaaatcacttatttagatcgaaag 8443704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 24099399 - 24099446
Alignment:
Q  13 aaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    ||||||||||||||||| ||| ||||||||||||||||| || |||||    
T  24099399 aaaagaaaacacttgatctatgtggaaatcacttatttaaatcgaaag 24099446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 43834144 - 43834183
Alignment:
Q  21 acacttgatatatatggaaatcacttatttagattgaaag 60  Q
    ||||||||||||| |||| |||||||||||||||||||||    
T  43834144 acacttgatatatgtggatatcacttatttagattgaaag 43834183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 1239531 - 1239581
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagat 54  Q
    |||| |||||||||||||||| |||||| | || |||||||||||||||||    
T  1239531 aaaaaacacaaaagaaaacacctgatatttgtgaaaatcacttatttagat 1239581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 27498491 - 27498553
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaaggaaatg 66  Q
    |||||||| ||||| ||| ||||||||||| |  |||||||||||||| |||||||| |||||    
T  27498491 aaaatacataaaaggaaaaacttgatatatgtaaaaatcacttatttaaattgaaagaaaatg 27498553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 14585661 - 14585605
Alignment:
Q  3 gaaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    ||||| |||| |||||||| ||||||| ||| || |||||||||||||||||||||||    
T  14585661 gaaaaaacacgaaagaaaa-acttgatgtatgtgaaaatcacttatttagattgaaag 14585605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 18890833 - 18890889
Alignment:
Q  3 gaaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    ||||| ||||||||||||| |||||||  || || |||||||||||||||||||||||    
T  18890833 gaaaaaacacaaaagaaaa-acttgatgcatgtgaaaatcacttatttagattgaaag 18890889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 20559880 - 20559929
Alignment:
Q  11 acaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    ||||||| ||| |||||||| || || |||||||||||||||||||||||    
T  20559880 acaaaaggaaaaacttgatagatgtgaaaatcacttatttagattgaaag 20559929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 20571442 - 20571491
Alignment:
Q  11 acaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    ||||||| ||| |||||||| || || |||||||||||||||||||||||    
T  20571442 acaaaaggaaaaacttgatagatgtgaaaatcacttatttagattgaaag 20571491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 26469338 - 26469379
Alignment:
Q  18 aaaacacttgatatatatggaaatcacttatttagattgaaa 59  Q
    |||| ||||||||||| || ||||||||||||||||||||||    
T  26469338 aaaaaacttgatatatgtgaaaatcacttatttagattgaaa 26469379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 40619200 - 40619253
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattga 57  Q
    |||| ||||||||  ||| ||||||||||| || ||||||||||||||||||||    
T  40619200 aaaaaacacaaaaagaaaaacttgatatatgtgaaaatcacttatttagattga 40619253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 7883368 - 7883423
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    |||| ||||||||||||| |||||||| || || ||| |||||||||||||||||||    
T  7883368 aaaaaacacaaaagaaaa-acttgatagatgtgaaaaccacttatttagattgaaag 7883423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 15344261 - 15344217
Alignment:
Q  10 cacaaaagaaaacacttgatatatatggaaatcacttatttagat 54  Q
    ||||||||||||| |||||||| | || |||||||||||||||||    
T  15344261 cacaaaagaaaacgcttgatatttgtgaaaatcacttatttagat 15344217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 15433326 - 15433282
Alignment:
Q  10 cacaaaagaaaacacttgatatatatggaaatcacttatttagat 54  Q
    ||||||||||||| |||||||| | || |||||||||||||||||    
T  15433326 cacaaaagaaaacgcttgatatttgtgaaaatcacttatttagat 15433282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 15524630 - 15524586
Alignment:
Q  10 cacaaaagaaaacacttgatatatatggaaatcacttatttagat 54  Q
    ||||||||||||| |||||||| | || |||||||||||||||||    
T  15524630 cacaaaagaaaacgcttgatatttgtgaaaatcacttatttagat 15524586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 20553373 - 20553429
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    |||| ||||||||| ||| |||| ||| || || |||||||||||||||||||||||    
T  20553373 aaaaaacacaaaaggaaaaacttcatagatgtgaaaatcacttatttagattgaaag 20553429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 40211432 - 40211488
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    |||| ||||||||||||| |||||||| || || ||| | |||||||||||||||||    
T  40211432 aaaaaacacaaaagaaaatacttgatagatgtgaaaaccgcttatttagattgaaag 40211488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 5e-28; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 3 - 159
Target Start/End: Original strand, 12648053 - 12648208
Alignment:
Q  3 gaaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaaggaaa-tgaaaaaagaatacggatgggtgattctagatcnnnn 101  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||  |||||||| ||  ||| |||||||||||| ||        
T  12648053 gaaaatacacaaaagaaaacacttgatatatgtggaaatcacttatttagattgaaagaaaagagaaaaaag-atgtggaggggtgattctaggtc-aaa 12648150  T
Q  102 nnntgatctaaaactgcccctcctcaacgactgaaagagaaagaaaacttagagagaa 159  Q
       ||| |||||||  |||||||||||||| | |||||||||||||||||| ||||||    
T  12648151 aaatgacctaaaaccacccctcctcaacgagtaaaagagaaagaaaacttaaagagaa 12648208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 9 - 152
Target Start/End: Original strand, 29574769 - 29574910
Alignment:
Q  9 acacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaaggaaat-gaaaaaagaatacggatgggtgattctagatcnnnnnnntga 107  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||| |||| |||||||| || |  | |||||||||||| ||       |||    
T  29574769 acacaaaa-aaaacacttgatatatgtggaaatcacttatttagattgaaagaaaatggaaaaaaggatgcaca-gggtgattctaggtc-aaaaaatga 29574865  T
Q  108 tctaaaactgcccctcctcaacgactgaaagagaaagaaaactta 152  Q
    ||||||||  ||||||||| |||| ||||||||||| ||||||||    
T  29574866 tctaaaaccacccctcctcgacgagtgaaagagaaataaaactta 29574910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 24461401 - 24461351
Alignment:
Q  9 acacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaa 59  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  24461401 acacaaaaaaaaacacttgatatatgtggaaatcacttatttagattgaaa 24461351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 43397249 - 43397320
Alignment:
Q  3 gaaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaaggaaatgaaaaaaga 74  Q
    ||||| ||||||||||||| ||||||||||| || ||| ||||||||||||||||||| ||| | |||||||    
T  43397249 gaaaaaacacaaaagaaaaaacttgatatatgtgaaaaccacttatttagattgaaagaaaagggaaaaaga 43397320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 19596013 - 19596073
Alignment:
Q  11 acaaaagaaaacacttgatatatatggaaatcacttatttagattgaaaggaaatgaaaaaa 72  Q
    |||||| |||||||||||||||| || |||||||||||||| ||||||| ||||||||||||    
T  19596013 acaaaataaaacacttgatatatgtgaaaatcacttatttacattgaaa-gaaatgaaaaaa 19596073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 4904275 - 4904330
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaa 59  Q
    |||| ||||||||||||| ||||||||||| || ||| ||||||||||||||||||    
T  4904275 aaaaaacacaaaagaaaaaacttgatatatgtgaaaaccacttatttagattgaaa 4904330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 14955482 - 14955436
Alignment:
Q  14 aaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    |||||||| ||||||| ||| ||||||||||||||||||||||||||    
T  14955482 aaagaaaaaacttgatgtatgtggaaatcacttatttagattgaaag 14955436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 36691844 - 36691788
Alignment:
Q  3 gaaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    ||||| ||||||||||||| ||||||||||| | |||| |||||||||||||||||||    
T  36691844 gaaaaaacacaaaagaaaaaacttgatatatgt-gaaaccacttatttagattgaaag 36691788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 11985360 - 11985416
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    |||| ||||||||||||| ||||||||||| || ||| |||||||||| ||||||||    
T  11985360 aaaacacacaaaagaaaaaacttgatatatgtgaaaaccacttatttaaattgaaag 11985416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 29279700 - 29279756
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    |||| ||||||||| ||| ||||||||||| || ||| |||||||||||||||||||    
T  29279700 aaaaaacacaaaaggaaaaacttgatatatgtgaaaaccacttatttagattgaaag 29279756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 31128914 - 31128965
Alignment:
Q  9 acacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    ||||||||| ||| ||||||||||| || ||| |||||||||||||||||||    
T  31128914 acacaaaaggaaaaacttgatatatgtgaaaaccacttatttagattgaaag 31128965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 160
Target Start/End: Original strand, 18107983 - 18108021
Alignment:
Q  122 tcctcaacgactgaaagagaaagaaaacttagagagaaa 160  Q
    ||||||| || ||||||||||||||||||||||||||||    
T  18107983 tcctcaatgaatgaaagagaaagaaaacttagagagaaa 18108021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 31788426 - 31788364
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaaggaaatg 66  Q
    |||| ||||||||| ||  |||||||| || || ||||||||||||||||||||||| |||||    
T  31788426 aaaaaacacaaaaggaacaacttgatagatgtgaaaatcacttatttagattgaaagaaaatg 31788364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 6359006 - 6359063
Alignment:
Q  3 gaaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    ||||| ||||||| ||||| ||||||||||| | |||| |||||||||| ||||||||    
T  6359006 gaaaaaacacaaaggaaaaaacttgatatatgtagaaaacacttatttaaattgaaag 6359063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 16261328 - 16261268
Alignment:
Q  9 acacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaaggaaatgaaaa 70  Q
    ||||||||||| | |||| | |||| |||||| |||||||||||||||||| ||||||||||    
T  16261328 acacaaaagaataaactttaaatatgtggaaaccacttatttagattgaaa-gaaatgaaaa 16261268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 3308908 - 3308853
Alignment:
Q  3 gaaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaa 59  Q
    ||||| |||| |||||||| ||||||| ||| || ||||||||||||||||||||||    
T  3308908 gaaaaaacacgaaagaaaa-acttgatgtatgtgaaaatcacttatttagattgaaa 3308853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 4041724 - 4041780
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    |||| ||||||||| ||| |||||||| || || ||| |||||||||||||||||||    
T  4041724 aaaaaacacaaaaggaaaaacttgatagatgtgaaaaccacttatttagattgaaag 4041780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 4099073 - 4099017
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    |||| ||||||||| ||| |||||||| || || ||| |||||||||||||||||||    
T  4099073 aaaaaacacaaaaggaaaaacttgatagatgtgaaaaccacttatttagattgaaag 4099017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 38445136 - 38445080
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    |||| ||||||||||||| |||||||| || || ||| |||||||||| ||||||||    
T  38445136 aaaaaacacaaaagaaaaaacttgatagatgtgaaaaccacttatttatattgaaag 38445080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 159
Target Start/End: Original strand, 58215 - 58363
Alignment:
Q  10 cacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaaggaaatgaaaaaagaatacggatgggtgattctagatcnnnnnnntgatc 109  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||| || | || |||||||| ||| ||       ||| |    
T  58215 cacaaaagaaaacacttgatatatgtggaaatcacttatttagattgaaagaaaaggaaaaaaggatgcagaggggtgattttaggtc-aaaaaatgacc 58313  T
Q  110 taaaactgcccctcctcaacgactgaaagagaaagaaaacttagagagaa 159  Q
    ||||||  ||||||||| |||| ||||||| || ||||||||||||||||    
T  58314 taaaaccacccctcctcgacgagtgaaagaaaacgaaaacttagagagaa 58363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 10332680 - 10332737
Alignment:
Q  3 gaaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10332680 gaaaaaacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 10332737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 8985062 - 8985132
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcactta-tttagattgaaaggaaatgaaaaaag 73  Q
    |||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||| ||||||    
T  8985062 aaaaaacacaaaagaaaacacttgatatatgtggaaatcacttattttagattgaaagaaaatggaaaaag 8985132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 11977066 - 11977122
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    |||| ||||||||||||| ||||||||||| || ||| |||||||||||||||||||    
T  11977066 aaaaaacacaaaagaaaaaacttgatatatgtgaaaaccacttatttagattgaaag 11977122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 8096632 - 8096683
Alignment:
Q  9 acacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    ||||||||||||| ||||||||||| || ||| |||||||||||||||||||    
T  8096632 acacaaaagaaaaaacttgatatatgtgaaaaccacttatttagattgaaag 8096683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 6216858 - 6216802
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    |||| ||||||||| ||| ||||||||||| || ||| |||||||||||||||||||    
T  6216858 aaaaaacacaaaaggaaaaacttgatatatgtgaaaaccacttatttagattgaaag 6216802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 14726591 - 14726647
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    |||| ||||| ||||||| |||||||||||||| ||| |||||| ||||||||||||    
T  14726591 aaaaaacacataagaaaaaacttgatatatatgaaaaccacttagttagattgaaag 14726647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 24229914 - 24229970
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    |||| ||||||||||||  |||||||| || || |||||||||||||||||||||||    
T  24229914 aaaaaacacaaaagaaacaacttgatagatgtgaaaatcacttatttagattgaaag 24229970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 7036181 - 7036131
Alignment:
Q  10 cacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    |||||||||||| | ||||||||| || ||| |||||||||||||||||||    
T  7036181 cacaaaagaaaaaaattgatatatgtgaaaaccacttatttagattgaaag 7036131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 8088342 - 8088412
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaaggaaatgaaaaaaga 74  Q
    |||| ||||||||||||||  ||||||| | || ||||||||||||||||| ||||| ||  |||||||||    
T  8088342 aaaaaacacaaaagaaaacgtttgatatttgtgaaaatcacttatttagatcgaaagaaagagaaaaaaga 8088412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 13007188 - 13007126
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaaggaaatg 66  Q
    |||| ||||||||| ||| |||||||| || || ||| ||||||||||||||||||| |||||    
T  13007188 aaaaaacacaaaaggaaaaacttgatagatgtgaaaaccacttatttagattgaaagaaaatg 13007126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 2979442 - 2979498
Alignment:
Q  3 gaaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    ||||| |||| |||||||| ||||||| ||| || |||||||||||||||||||||||    
T  2979442 gaaaaaacacgaaagaaaa-acttgatgtatgtgaaaatcacttatttagattgaaag 2979498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 159
Target Start/End: Original strand, 8985180 - 8985221
Alignment:
Q  118 cccctcctcaacgactgaaagagaaagaaaacttagagagaa 159  Q
    |||||||| ||||| |||||||||| ||||||||||||||||    
T  8985180 cccctcctaaacgagtgaaagagaacgaaaacttagagagaa 8985221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 15571438 - 15571389
Alignment:
Q  11 acaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    ||||||| ||| ||||||||||| || ||| |||||||||||||||||||    
T  15571438 acaaaaggaaaaacttgatatatgtgaaaaccacttatttagattgaaag 15571389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 26878215 - 26878264
Alignment:
Q  11 acaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    ||||||||||| ||||||| ||| || ||| |||||||||||||||||||    
T  26878215 acaaaagaaaaaacttgatttatgtgaaaaccacttatttagattgaaag 26878264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 28541042 - 28541098
Alignment:
Q  3 gaaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    ||||| |||| |||||||| ||||||| ||| || |||||||||||||||||||||||    
T  28541042 gaaaaaacacgaaagaaaa-acttgatgtatgtgaaaatcacttatttagattgaaag 28541098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 39567254 - 39567198
Alignment:
Q  3 gaaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    ||||| |||| |||||||| ||||||| ||| || |||||||||||||||||||||||    
T  39567254 gaaaaaacacgaaagaaaa-acttgatgtatgtgaaaatcacttatttagattgaaag 39567198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 3 - 159
Target Start/End: Original strand, 50194412 - 50194567
Alignment:
Q  3 gaaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaaggaaatgaaaaaagaatacggatgggtgattctagatcnnnnn 102  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||  || | |||||| || | ||  ||||||| ||| ||         
T  50194412 gaaaaaacacaaaagaaaacacttgatatatgtggaaatcacttatttagattgaaagagaagggaaaaaggatgcagagaggtgattttaggtc-aaaa 50194510  T
Q  103 nntgatctaaaactgcccctcctcaacgactgaaagagaaagaaaacttagagagaa 159  Q
      |||||||||||  | ||| ||| |||| |||||||||| ||||||||||||||||    
T  50194511 aatgatctaaaaccactccttctcgacgagtgaaagagaacgaaaacttagagagaa 50194567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 29922013 - 29921956
Alignment:
Q  3 gaaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  29922013 gaaaaaacacaaaagaaaacacttgatatatgtggaaatcacttatttagattgaaag 29921956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 29971166 - 29971109
Alignment:
Q  3 gaaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  29971166 gaaaaaacacaaaagaaaacacttgatatatgtggaaatcacttatttagattgaaag 29971109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 12947410 - 12947464
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaa 58  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  12947410 aaaaaacacaaaagaaaacacttgatatatgtggaaatcacttatttagattgaa 12947464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 35175358 - 35175304
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaa 58  Q
    |||| ||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  35175358 aaaaaacacaaaagaaaacacttgatatatgtggaaatcacttgtttagattgaa 35175304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 33579827 - 33579759
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaaggaaatgaaaaaa 72  Q
    |||| ||||||||||||| ||| ||||||| || ||||||||||||||||||||||| ||||| |||||    
T  33579827 aaaaaacacaaaagaaaaaactagatatatgtgaaaatcacttatttagattgaaagaaaatggaaaaa 33579759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 44804983 - 44804934
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttaga 53  Q
    |||| ||||| ||||||||||||||||||| |||||||||||||||||||    
T  44804983 aaaaaacacagaagaaaacacttgatatatgtggaaatcacttatttaga 44804934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 36461560 - 36461616
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    |||| ||||||||||||| |||||||| || || |||||||||||||||||||||||    
T  36461560 aaaaaacacaaaagaaaaaacttgatagatgtgaaaatcacttatttagattgaaag 36461616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 47896111 - 47896055
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    |||| ||||||||||||| ||||||||||| || ||| |||||||||||||||||||    
T  47896111 aaaaaacacaaaagaaaaaacttgatatatgtgaaaaccacttatttagattgaaag 47896055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 159
Target Start/End: Complemental strand, 29921898 - 29921857
Alignment:
Q  118 cccctcctcaacgactgaaagagaaagaaaacttagagagaa 159  Q
    ||||||||| |||| |||||||||||||||||||||||||||    
T  29921898 cccctcctcgacgaatgaaagagaaagaaaacttagagagaa 29921857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 159
Target Start/End: Complemental strand, 29971051 - 29971010
Alignment:
Q  118 cccctcctcaacgactgaaagagaaagaaaacttagagagaa 159  Q
    ||||||||| |||| |||||||||||||||||||||||||||    
T  29971051 cccctcctcgacgaatgaaagagaaagaaaacttagagagaa 29971010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 53508181 - 53508124
Alignment:
Q  3 gaaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    ||||| ||||| ||||||| ||||||||||| || |||||||||||||| ||||||||    
T  53508181 gaaaaaacacagaagaaaaaacttgatatatgtgaaaatcacttatttatattgaaag 53508124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 20987928 - 20987984
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    |||| ||||||||||||| ||| ||||||| || |||||||||||||| ||||||||    
T  20987928 aaaaaacacaaaagaaaaaactcgatatatttgaaaatcacttatttaaattgaaag 20987984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 42460700 - 42460650
Alignment:
Q  9 acacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    |||| |||||||| ||||||| ||| ||||||||||||||||||||||||||    
T  42460700 acacgaaagaaaa-acttgatgtatgtggaaatcacttatttagattgaaag 42460650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 52116140 - 52116187
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttattta 51  Q
    |||| ||||||||||||| ||||||||||| || ||||||||||||||    
T  52116140 aaaaaacacaaaagaaaaaacttgatatatgtgaaaatcacttattta 52116187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 54148941 - 54148892
Alignment:
Q  11 acaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    ||||||||||| |||||||| || || ||| |||||||||||||||||||    
T  54148941 acaaaagaaaaaacttgatagatgtgaaaaccacttatttagattgaaag 54148892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 60
Target Start/End: Original strand, 7887562 - 7887594
Alignment:
Q  28 atatatatggaaatcacttatttagattgaaag 60  Q
    ||||| |||||||||||||||||||||||||||    
T  7887562 atatacatggaaatcacttatttagattgaaag 7887594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 43488719 - 43488775
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    |||| ||||||| ||||| |||||||| || || ||| |||||||||||||||||||    
T  43488719 aaaaaacacaaatgaaaaaacttgatagatgtgaaaaccacttatttagattgaaag 43488775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 52923246 - 52923302
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    |||| ||||||||| ||| |||||||| || || ||| |||||||||||||||||||    
T  52923246 aaaagacacaaaaggaaaaacttgatagatgtgaaaaccacttatttagattgaaag 52923302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 41553566 - 41553623
Alignment:
Q  3 gaaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    ||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  41553566 gaaaaaacacaaaagaaaacacttgatatatgtggaaatcccttatttagattgaaag 41553623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 41553911 - 41553968
Alignment:
Q  3 gaaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    ||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  41553911 gaaaaaacacaaaagaaaacacttgatatatgtggaaatcccttatttagattgaaag 41553968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 41554256 - 41554313
Alignment:
Q  3 gaaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    ||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  41554256 gaaaaaacacaaaagaaaacacttgatatatgtggaaatcccttatttagattgaaag 41554313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 35665266 - 35665317
Alignment:
Q  9 acacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    ||||||||||||||| ||||||||| | |||||||||||||||||| |||||    
T  35665266 acacaaaagaaaacatttgatatatttcgaaatcacttatttagatcgaaag 35665317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 28476182 - 28476126
Alignment:
Q  3 gaaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    ||||| ||||||||||||| ||||||| ||| || |||||||||||||||||||||||    
T  28476182 gaaaaaacacaaaagaaaa-acttgatgtatgtgaaaatcacttatttagattgaaag 28476126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 37837588 - 37837644
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    |||| ||||||||||||| |||| |||||| || ||| |||||||||||||||||||    
T  37837588 aaaaaacacaaaagaaaaaacttaatatatgtgtaaaccacttatttagattgaaag 37837644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 47590273 - 47590217
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    |||| ||||||||| ||| ||||||||||| || ||| |||||||||||||||||||    
T  47590273 aaaaaacacaaaaggaaaaacttgatatatgtgaaaaccacttatttagattgaaag 47590217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 48061380 - 48061329
Alignment:
Q  9 acacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    ||||||||||||| |||||||| || || ||| |||||||||||||||||||    
T  48061380 acacaaaagaaaaaacttgatagatgtgaaaaccacttatttagattgaaag 48061329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 12141441 - 12141491
Alignment:
Q  9 acacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaa 59  Q
    ||||||||||||| |||||||| || || ||| ||||||||||||||||||    
T  12141441 acacaaaagaaaaaacttgatagatgtgaaaaccacttatttagattgaaa 12141491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 24350974 - 24351063
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaaggaaatgaaaaaagaatacggatgggtgattctag 94  Q
    |||| |||| |||||||| ||||||| ||| || ||||||||||||||||||||||| ||  |||||||| || |  | ||||||||||||    
T  24350974 aaaaaacacgaaagaaaa-acttgatgtatgtgaaaatcacttatttagattgaaagaaagggaaaaaaggatgcacaggggtgattctag 24351063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 1749284 - 1749343
Alignment:
Q  14 aaagaaaacacttgatatatatggaaatcacttatttagattgaaaggaaatgaaaaaaga 74  Q
    |||||||| ||||||| ||| || ||||||||||||||||||||||| ||  |||||||||    
T  1749284 aaagaaaa-acttgatgtatgtgaaaatcacttatttagattgaaagaaagggaaaaaaga 1749343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 5078524 - 5078579
Alignment:
Q  3 gaaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaa 59  Q
    ||||| ||||||||||||| ||||||||||| |  ||||||||||||||||| ||||    
T  5078524 gaaaaaacacaaaagaaaa-acttgatatatgtaaaaatcacttatttagatcgaaa 5078579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 19404892 - 19404952
Alignment:
Q  12 caaaagaaaacacttgatatatatggaaatcacttatttagattgaaaggaaatgaaaaaa 72  Q
    |||||| ||| ||||||| ||| || ||| ||||||||||||||||||| ||| |||||||    
T  19404892 caaaaggaaaaacttgatttatgtgaaaaccacttatttagattgaaagaaaaggaaaaaa 19404952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 59
Target Start/End: Complemental strand, 26583676 - 26583644
Alignment:
Q  27 gatatatatggaaatcacttatttagattgaaa 59  Q
    |||||||||| ||||||||||||||||||||||    
T  26583676 gatatatatgaaaatcacttatttagattgaaa 26583644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 30756948 - 30757004
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    |||| ||||||||| ||| || ||||| || || |||||||||||||||||||||||    
T  30756948 aaaaaacacaaaaggaaaaacatgatagatgtgaaaatcacttatttagattgaaag 30757004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 34899736 - 34899792
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    |||| ||||||||| ||| |||||||| || || ||| |||||||||||||||||||    
T  34899736 aaaaaacacaaaaggaaaaacttgatagatgtgaaaaccacttatttagattgaaag 34899792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 39171720 - 39171776
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    |||| ||||||||| ||| |||||||| ||||| ||| ||||||||||||| |||||    
T  39171720 aaaaaacacaaaaggaaaaacttgatagatatgaaaaccacttatttagatcgaaag 39171776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 40993144 - 40993088
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    |||| ||||||||| ||| |||||||| || || ||| |||||||||||||||||||    
T  40993144 aaaaaacacaaaaggaaaaacttgatagatgtgaaaaccacttatttagattgaaag 40993088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 30493485 - 30493420
Alignment:
Q  9 acacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaaggaaatgaaaaaaga 74  Q
    ||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||  |||||||||    
T  30493485 acacaaaagaaaacacttgatatatgtggaaatcacttatttagtttgaaagaaagggaaaaaaga 30493420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 28981128 - 28981067
Alignment:
Q  13 aaaagaaaacacttgatatatatggaaatcacttatttagattgaaaggaaatgaaaaaaga 74  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||| ||  |||||||||    
T  28981128 aaaaaaaaacacttgatatatgtggaaatcacttatttagattgaaagaaagggaaaaaaga 28981067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 96
Target Start/End: Complemental strand, 22571442 - 22571358
Alignment:
Q  11 acaaaagaaaacacttgatatatatggaaatcacttatttagattgaaaggaaatgaaaaaagaatacggatgggtgattctagat 96  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||  |||| | | |||||||| || | ||||| |||||||||||    
T  22571442 acaaaagaaaaaacttgatatatgtggaaatcacttatttagatcaaaagaagaggaaaaaag-atgcagatggttgattctagat 22571358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 26588602 - 26588689
Alignment:
Q  9 acacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaaggaaatgaaaaaagaatacggatgggtgattctagatc 97  Q
    |||||||| |||| ||||||||||| |||||| |||||||||||||| ||| |||||| ||||| |||   ||||||||||| ||||||    
T  26588602 acacaaaaaaaaaaacttgatatatgtggaaaccacttatttagatt-aaaagaaatggaaaaaaaatgaagatgggtgattatagatc 26588689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 32191868 - 32191916
Alignment:
Q  11 acaaaagaaaacacttgatatatatggaaatcacttatttagattgaaa 59  Q
    ||||||||||||||||||||||| | |||||||||||||||||| ||||    
T  32191868 acaaaagaaaacacttgatatatgtagaaatcacttatttagatcgaaa 32191916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 34018521 - 34018459
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaaggaaatg 66  Q
    |||| ||||||||||||| ||||||||||| || ||| |||||||||| |||||||| |||||    
T  34018521 aaaaaacacaaaagaaaaaacttgatatatgtgaaaaccacttatttaaattgaaagaaaatg 34018459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 3913703 - 3913794
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaaggaaat--gaaaaaagaatacggatgggtgattctag 94  Q
    |||| ||||||||||||| |||||||| || || ||| |||||||||||||||||||  |||  |||||||| || |||| ||||||||||||    
T  3913703 aaaaaacacaaaagaaaaaacttgatagatgtgaaaaccacttatttagattgaaagagaatgggaaaaaag-atgcggaggggtgattctag 3913794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 11321602 - 11321659
Alignment:
Q  8 tacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaaggaaat 65  Q
    |||||||||||||| |||| |||||| || ||| ||||||||||||||||||| ||||    
T  11321602 tacacaaaagaaaaaacttaatatatgtgaaaaccacttatttagattgaaagaaaat 11321659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 30776626 - 30776570
Alignment:
Q  3 gaaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    ||||| ||||||||||||| ||||||| ||| ||||||| ||||||||||||||||||    
T  30776626 gaaaaaacacaaaagaaaa-acttgatgtatgtggaaattacttatttagattgaaag 30776570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 1933827 - 1933882
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaa 59  Q
    |||| ||||||||||||| ||||||||||| || |||| |||||||||||| ||||    
T  1933827 aaaaaacacaaaagaaaaaacttgatatatgtgaaaataacttatttagatcgaaa 1933882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 1523347 - 1523310
Alignment:
Q  23 acttgatatatatggaaatcacttatttagattgaaag 60  Q
    ||||||| ||| ||||||||||||||||||||||||||    
T  1523347 acttgatgtatgtggaaatcacttatttagattgaaag 1523310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 7976311 - 7976355
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatt 49  Q
    |||| |||||||||||||||||| |||||| |||||||||||||||    
T  7976311 aaaaaacacaaaagaaaacactt-atatatgtggaaatcacttatt 7976355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 8102680 - 8102624
Alignment:
Q  3 gaaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    ||||| ||||||||||||| ||||||| | | || |||||||||||||||||||||||    
T  8102680 gaaaaaacacaaaagaaaa-acttgatgtttgtgaaaatcacttatttagattgaaag 8102624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 14801158 - 14801074
Alignment:
Q  13 aaaagaaaacacttgatatatatggaaatcacttatttagattgaaaggaaatgaaaaaagaatacggatgggtgattctagatc 97  Q
    |||| |||| ||||||| ||| || |||| |||||||||||||||||| ||  | |||||  |||| || |||||||||||||||    
T  14801158 aaaaaaaaaaacttgatgtatgtgaaaattacttatttagattgaaagaaaggggaaaaaatatacagaggggtgattctagatc 14801074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 33053297 - 33053353
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    |||| ||||||||| ||| |||||||| || || ||| |||||||||||||||||||    
T  33053297 aaaaaacacaaaaggaaaaacttgatagatgtgaaaaccacttatttagattgaaag 33053353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 47158207 - 47158139
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaaggaaatgaaaaaa 72  Q
    |||| ||||||||||||| ||||||||||| ||||||||||||||||| |||||||| || ||||||||    
T  47158207 aaaaaacacaaaagaaaaaacttgatatatgtggaaatcacttatttaaattgaaagaaagtgaaaaaa 47158139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 9713878 - 9713831
Alignment:
Q  13 aaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  9713878 aaaagaaaaaacttgatatatgtggaaatcacttatttagattgaaag 9713831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 9643355 - 9643304
Alignment:
Q  9 acacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    |||||||||||||||| |||||||| || ||||||||||||||||| |||||    
T  9643355 acacaaaagaaaacacatgatatatgtgaaaatcacttatttagatcgaaag 9643304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 90
Target Start/End: Complemental strand, 28857334 - 28857272
Alignment:
Q  28 atatatatggaaatcacttatttagattgaaaggaaatgaaaaaagaatacggatgggtgatt 90  Q
    |||||| |||||||||||||||| |||||||||||||   |||||| |||| |||||||||||    
T  28857334 atatatgtggaaatcacttatttggattgaaaggaaagagaaaaaggatacagatgggtgatt 28857272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 51888346 - 51888396
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagat 54  Q
    |||| ||||||||||||||||||||||||| || ||||||||| |||||||    
T  51888346 aaaaaacacaaaagaaaacacttgatatatgtgaaaatcacttgtttagat 51888396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 4937802 - 4937757
Alignment:
Q  13 aaaagaaaacacttgatatatatggaaatcacttatttagattgaa 58  Q
    ||||||||| |||| ||||||||| |||||||||||||||||||||    
T  4937802 aaaagaaaaaacttaatatatatgaaaatcacttatttagattgaa 4937757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 22038935 - 22039000
Alignment:
Q  9 acacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaaggaaatgaaaaaaga 74  Q
    ||||||||||||| |||||||| || || ||||||||||||||||| ||||| ||  |||||||||    
T  22038935 acacaaaagaaaaaacttgatagatgtgaaaatcacttatttagatagaaagaaagggaaaaaaga 22039000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 13634095 - 13634039
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    |||| ||||||||||||| |||||||| || || ||| |||||||||||||||||||    
T  13634095 aaaaaacacaaaagaaaaaacttgatagatgtgaaaaccacttatttagattgaaag 13634039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 26633800 - 26633856
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    |||| ||||||||||||| |||||||| || || ||| |||||||||||||||||||    
T  26633800 aaaaaacacaaaagaaaaaacttgatagatgtgaaaaccacttatttagattgaaag 26633856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 5119314 - 5119263
Alignment:
Q  9 acacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    ||||||||| ||| ||||||||||| || ||| |||||||||||||||||||    
T  5119314 acacaaaaggaaaaacttgatatatgtgaaaaccacttatttagattgaaag 5119263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 9634645 - 9634598
Alignment:
Q  13 aaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    |||||||||||| |||||||| || ||||||||||||||||| |||||    
T  9634645 aaaagaaaacacatgatatatgtgaaaatcacttatttagatcgaaag 9634598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 22558598 - 22558649
Alignment:
Q  9 acacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    ||||||||||||| |||||||| || || ||| |||||||||||||||||||    
T  22558598 acacaaaagaaaaaacttgatagatgtgaaaaccacttatttagattgaaag 22558649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 29961054 - 29961109
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaa 59  Q
    |||| ||||||||| ||| |||||||| || || ||||||||||||||||||||||    
T  29961054 aaaaaacacaaaaggaaaaacttgatagatgtgaaaatcacttatttagattgaaa 29961109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 2520757 - 2520703
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaa 58  Q
    |||| ||||||||||||| |||||||| || || ||| |||||||||||||||||    
T  2520757 aaaaaacacaaaagaaaaaacttgatagatgtgaaaaccacttatttagattgaa 2520703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 42032653 - 42032691
Alignment:
Q  3 gaaaatacacaaaagaaaacacttgatatatatggaaat 41  Q
    ||||| ||||||||||||| |||||||||||||||||||    
T  42032653 gaaaaaacacaaaagaaaagacttgatatatatggaaat 42032691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 47320531 - 47320581
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagat 54  Q
    |||| |||||||||||||| |||||||| | || |||||||||||||||||    
T  47320531 aaaaaacacaaaagaaaacgcttgatatttgtgaaaatcacttatttagat 47320581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 22300817 - 22300768
Alignment:
Q  11 acaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    |||||||||| |||||||||||  || |||||||||||||| ||||||||    
T  22300817 acaaaagaaagcacttgatatacgtgaaaatcacttatttaaattgaaag 22300768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 31359893 - 31359950
Alignment:
Q  15 aagaaaacacttgatatatatggaaatcacttatttagattgaaaggaaatgaaaaaa 72  Q
    ||||||| |||||||| || ||||||| | |||||||||||||||| ||||| |||||    
T  31359893 aagaaaaaacttgataaatgtggaaataatttatttagattgaaagaaaatggaaaaa 31359950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 33921025 - 33920984
Alignment:
Q  10 cacaaaagaaaacacttgatatatatggaaatcacttattta 51  Q
    |||||||||||| ||||||||||| || ||||||||||||||    
T  33921025 cacaaaagaaaaaacttgatatatgtgaaaatcacttattta 33920984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 37188694 - 37188739
Alignment:
Q  14 aaagaaaacacttgatatatatggaaatcacttatttagattgaaa 59  Q
    |||||||| ||| ||||||| || ||||||||||||||||||||||    
T  37188694 aaagaaaaaactagatatatgtgaaaatcacttatttagattgaaa 37188739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 38166373 - 38166430
Alignment:
Q  15 aagaaaacacttgatatatatggaaatcacttatttagattgaaaggaaatgaaaaaa 72  Q
    |||| |||||||||||||| || ||||||||| ||||||| ||||||||  |||||||    
T  38166373 aagacaacacttgatatatgtgaaaatcacttgtttagatcgaaaggaatggaaaaaa 38166430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 52978794 - 52978749
Alignment:
Q  14 aaagaaaacacttgatatatatggaaatcacttatttagattgaaa 59  Q
    |||| ||| ||||||||||| || ||||||||||||||||||||||    
T  52978794 aaaggaaaaacttgatatatgtgaaaatcacttatttagattgaaa 52978749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 21686370 - 21686426
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    |||| ||||||||| ||| |||||||| || || ||| |||||||||||||||||||    
T  21686370 aaaaaacacaaaaggaaaaacttgatagatgtgaaaaccacttatttagattgaaag 21686426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 60
Target Start/End: Original strand, 33332756 - 33332788
Alignment:
Q  28 atatatatggaaatcacttatttagattgaaag 60  Q
    |||||||||||||||||||||||||||| ||||    
T  33332756 atatatatggaaatcacttatttagattaaaag 33332788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 35348284 - 35348229
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    |||| ||||||||||||| ||||||||| | || ||| |||||||||||||||||||    
T  35348284 aaaaaacacaaaagaaaa-acttgatatttgtgaaaaccacttatttagattgaaag 35348229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 36204525 - 36204601
Alignment:
Q  18 aaaacacttgatatatatggaaatcacttatttagattgaaaggaaatgaaaaaagaatacggatgggtgattctag 94  Q
    |||||||||||| ||| ||||||||||||||||| || ||||| ||| | ||| | ||| | || ||||||||||||    
T  36204525 aaaacacttgatctatgtggaaatcacttatttaaatcgaaagaaaaaggaaacaaaatgcagaggggtgattctag 36204601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 47132856 - 47132793
Alignment:
Q  10 cacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaaggaaatgaaaaaag 73  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||||| ||| | ||||||    
T  47132856 cacaaaagaaaacacttgatatatgtagaaatcacttatttagattgaaagaaaagggaaaaag 47132793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 12635124 - 12635076
Alignment:
Q  9 acacaaaagaaaacacttgatatatatggaaatcacttatttagattga 57  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||    
T  12635124 acacaaaagaaaacacttgatatatgtgaaaatcacttatttagattga 12635076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 15492254 - 15492184
Alignment:
Q  3 gaaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaaggaaatgaaaaaaga 74  Q
    ||||| ||||||||||||| ||||||||||| || |||||| ||||||||||||||| |||||| |||||||    
T  15492254 gaaaaaacacaaaagaaaaaacttgatatatgtgaaaatcatttatttagattgaaa-gaaatggaaaaaga 15492184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 44543233 - 44543163
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaaggaaatgaaaaaaga 74  Q
    |||| ||||||||||||||||||||||| | || ||||||||||||||||| ||||| ||  |||||||||    
T  44543233 aaaaaacacaaaagaaaacacttgatatttgtgaaaatcacttatttagatcgaaagaaagggaaaaaaga 44543163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 37720250 - 37720306
Alignment:
Q  3 gaaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    ||||| ||||||||||||| ||||||| ||| ||||||||||||||||||||||||||    
T  37720250 gaaaaaacacaaaagaaaa-acttgatgtatgtggaaatcacttatttagattgaaag 37720306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 16161794 - 16161739
Alignment:
Q  3 gaaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaa 59  Q
    ||||| ||||||||||||| ||||||| ||| |||||||||||||||||||||||||    
T  16161794 gaaaaaacacaaaagaaaa-acttgatgtatgtggaaatcacttatttagattgaaa 16161739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 23291772 - 23291828
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    |||| ||||||||||||| ||||||||||| || ||| |||||||||||||||||||    
T  23291772 aaaaaacacaaaagaaaaaacttgatatatgtgaaaaccacttatttagattgaaag 23291828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 1742236 - 1742187
Alignment:
Q  11 acaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    ||||||||||| ||||||||||| || ||| |||||||||||||||||||    
T  1742236 acaaaagaaaaaacttgatatatgtgaaaaccacttatttagattgaaag 1742187  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 13144941 - 13144997
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    |||| ||||||||| ||| | |||||||||||| ||| |||||||||||||||||||    
T  13144941 aaaaaacacaaaaggaaaaagttgatatatatgaaaaccacttatttagattgaaag 13144997  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 21947747 - 21947803
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    |||| ||||||||||||| |||||||| || || ||| |||||||||||||||||||    
T  21947747 aaaaaacacaaaagaaaaaacttgatagatgtgaaaaccacttatttagattgaaag 21947803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 32679237 - 32679285
Alignment:
Q  12 caaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    ||||| |||||| ||||||||| ||||||||||||||||| ||||||||    
T  32679237 caaaataaaacaattgatatatgtggaaatcacttatttaaattgaaag 32679285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 49626872 - 49626816
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    |||| |||||||||||||| |||||||| | || ||||||||||||||||| |||||    
T  49626872 aaaaaacacaaaagaaaacgcttgatatttgtgaaaatcacttatttagatagaaag 49626816  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 9341681 - 9341630
Alignment:
Q  9 acacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    ||||||||||||||||||||||||| || ||||  |||||||| ||||||||    
T  9341681 acacaaaagaaaacacttgatatatgtgaaaatttcttatttatattgaaag 9341630  T

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Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 29738770 - 29738821
Alignment:
Q  9 acacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    ||||||||||||| |||||||| || || ||| |||||||||||||||||||    
T  29738770 acacaaaagaaaaaacttgatagatgtgaaaaccacttatttagattgaaag 29738821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 31918945 - 31918899
Alignment:
Q  11 acaaaagaaaacacttgatatatatggaaatcacttatttagattga 57  Q
    ||||||||||| ||||||||||| || ||| ||||||||||||||||    
T  31918945 acaaaagaaaaaacttgatatatgtgaaaaccacttatttagattga 31918899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 156
Target Start/End: Original strand, 32679342 - 32679380
Alignment:
Q  118 cccctcctcaacgactgaaagagaaagaaaacttagaga 156  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  32679342 cccctcctcgacgagtgaaagagaaagaaaacttagaga 32679380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 97
Target Start/End: Original strand, 36775846 - 36775938
Alignment:
Q  3 gaaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaaggaaatgaaaaaagaatacggatgggtgattctagatc 97  Q
    ||||| |||| |||||||| ||||||| ||| || |||||| |||||||||||||||| ||  |||||||| || | || |||||||||||||||    
T  36775846 gaaaaaacacgaaagaaaa-acttgatgtatgtgaaaatcatttatttagattgaaagaaagggaaaaaag-atgcagaggggtgattctagatc 36775938  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 13075765 - 13075821
Alignment:
Q  3 gaaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    ||||| ||||||||||||| |||| | |||||||  ||||||||||||||||||||||    
T  13075765 gaaaaaacacaaaagaaaatactt-agatatatgtgaatcacttatttagattgaaag 13075821  T

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Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 7337792 - 7337848
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    |||| ||||||||| ||| |||||||| || || ||| |||||||||||||||||||    
T  7337792 aaaaaacacaaaaggaaaaacttgatagatgtgaaaaccacttatttagattgaaag 7337848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 8212039 - 8212107
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaaggaaatgaaaaaa 72  Q
    |||| |||||||||  || ||||||||||| || ||| |||||||||||||| |||| ||| |||||||    
T  8212039 aaaaaacacaaaagggaaaacttgatatatgtgaaaaccacttatttagatttaaagaaaaggaaaaaa 8212107  T

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Target: scaffold0136 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 10175 - 10238
Alignment:
Q  9 acacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaaggaaatgaaaaaa 72  Q
    ||||||||| ||| ||||||||||| || ||| ||||||||||||| ||||| ||| |||||||    
T  10175 acacaaaaggaaaaacttgatatatgtgaaaaccacttatttagatggaaagaaaacgaaaaaa 10238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 38006 - 37950
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    |||| ||||||||| ||| |||||| |||| || ||| |||||||||||||||||||    
T  38006 aaaaaacacaaaaggaaaaacttgacatatgtgaaaaccacttatttagattgaaag 37950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 7675 - 7619
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    |||| ||||||||| ||| ||||||||||| || ||| |||||||||| ||||||||    
T  7675 aaaaaacacaaaaggaaaaacttgatatatgtgaaaaccacttatttaaattgaaag 7619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 1303 - 1247
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    |||| |||||||||| || ||||||||||| || ||| |||||||||||| ||||||    
T  1303 aaaaaacacaaaagagaaaacttgatatatgtgaaaaccacttatttagagtgaaag 1247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 15451 - 15395
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    |||| ||||||||| ||| |||||| | ||||| ||| |||||||||||||||||||    
T  15451 aaaaaacacaaaaggaaaaacttgaaagatatgaaaaccacttatttagattgaaag 15395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 32877 - 32933
Alignment:
Q  4 aaaatacacaaaagaaaacacttgatatatatggaaatcacttatttagattgaaag 60  Q
    |||| ||||||||| ||| |||||||| || || ||| |||||||||||||||||||    
T  32877 aaaaaacacaaaaggaaaaacttgatagatgtgaaaaccacttatttagattgaaag 32933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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