View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11550_low_13 (Length: 257)
Name: NF11550_low_13
Description: NF11550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11550_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 9832132 - 9832370
Alignment:
| Q |
1 |
cccagaagctgatcctgacagtatattaagctgggagttggatttttgttctagaccaattcttgatgctagagggaagaaactttgggagcttgttgtt |
100 |
Q |
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| T |
9832132 |
cccagaagctgatcctgacagtatattaagctgggagttggatttttgttctagaccaattcttgatgctagagggaagaaactttgggagcttgttgtt |
9832231 |
T |
|
| Q |
101 |
tgtgataaatctctttcacttcaatatactaagtattttcctaataatgttattaatagtatcactctcaaggattctattgttgctatttgtgatgact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9832232 |
tgtgataaatctctttcacttcaatatactaagtattttcctaataatgttattaatagtatcactctcaaggattctattgttgctatttgtgatgact |
9832331 |
T |
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| Q |
201 |
tggatctacctgtgcctagaaacattcgcttctttaggt |
239 |
Q |
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| T |
9832332 |
tggatctacctgtgcctagaaacattcgcttctttaggt |
9832370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 23 - 236
Target Start/End: Complemental strand, 44149322 - 44149110
Alignment:
| Q |
23 |
atattaagctgggagttggatttttgttctagaccaattcttgatgctagagggaagaaactttgggagcttgttgtttgtgataaatctctttcacttc |
122 |
Q |
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| T |
44149322 |
atattaagctgggagttggatttt-gttctagaccaattcttgatgttagaggaaagaaaatttgggagcttgttgtttgtgataaatctctttcacttc |
44149224 |
T |
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| Q |
123 |
aatatactaagtattttcctaataatgttattaatagtatcactctcaaggattctattgttgctatttgtgatgacttggatctacctgtgcctagaaa |
222 |
Q |
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|||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
44149223 |
aatatactaagtattttcctaataatgttactaactgtatcactctcaaggattctattgttgctatttgtgatgacttggatctacctttacctagaaa |
44149124 |
T |
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| Q |
223 |
cattcgcttcttta |
236 |
Q |
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|||| ||||||||| |
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| T |
44149123 |
catttgcttcttta |
44149110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 23 - 236
Target Start/End: Complemental strand, 45665418 - 45665206
Alignment:
| Q |
23 |
atattaagctgggagttggatttttgttctagaccaattcttgatgctagagggaagaaactttgggagcttgttgtttgtgataaatctctttcacttc |
122 |
Q |
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|||||||||||||||||||||||| ||||||||| ||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
45665418 |
atattaagctgggagttggatttt-gttctagactaattcttgatgttagaggaaagaaaatttgggagcttgttgtttgtgataaatctctttcacttc |
45665320 |
T |
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| Q |
123 |
aatatactaagtattttcctaataatgttattaatagtatcactctcaaggattctattgttgctatttgtgatgacttggatctacctgtgcctagaaa |
222 |
Q |
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|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||| |||| |
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| T |
45665319 |
aatatactaagtattttcctaataatgttactaactgtatcactctcaaggattctattgttgctatttgtgatgactcggatctacctttacctggaaa |
45665220 |
T |
|
| Q |
223 |
cattcgcttcttta |
236 |
Q |
| |
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|||| ||||||||| |
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| T |
45665219 |
catttgcttcttta |
45665206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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