View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11550_low_4 (Length: 419)

Name: NF11550_low_4
Description: NF11550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11550_low_4
NF11550_low_4
[»] chr6 (2 HSPs)
chr6 (192-417)||(2561360-2561585)
chr6 (27-148)||(16408587-16408705)
[»] chr8 (6 HSPs)
chr8 (13-195)||(31080503-31080681)
chr8 (30-150)||(31004424-31004542)
chr8 (27-143)||(10645154-10645268)
chr8 (48-178)||(17849980-17850108)
chr8 (27-81)||(155625-155678)
chr8 (25-74)||(26470580-26470629)
[»] chr1 (2 HSPs)
chr1 (26-178)||(26807567-26807717)
chr1 (94-178)||(13782894-13782978)
[»] chr2 (4 HSPs)
chr2 (54-179)||(16801867-16801990)
chr2 (54-179)||(16841153-16841276)
chr2 (22-59)||(29572578-29572615)
chr2 (35-110)||(23650600-23650673)
[»] chr4 (3 HSPs)
chr4 (19-83)||(20784728-20784792)
chr4 (24-178)||(39492582-39492735)
chr4 (19-56)||(9934847-9934884)
[»] chr5 (3 HSPs)
chr5 (28-178)||(26150362-26150508)
chr5 (22-74)||(1825480-1825532)
chr5 (27-63)||(12673563-12673599)


Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 192 - 417
Target Start/End: Original strand, 2561360 - 2561585
Alignment:
Q  192 attccgtcatattcctggctttcaaaattgttttgctgttgatagacaaggttgtggtggcgggttagctttattttggcgtaatacttttaattgcaaa 291  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  2561360 attccatcatattcctggctttgaaaattgttttgctgttgatagacaaggtcgtggtggcgggttagctttattttggcgtaatacttttaattgcaaa 2561459  T
Q  292 cttttaaattactctcagaaccacattaatgttgaggtggacgaaggttcacgtggtaaatggcagttaacgggttattatggcttccccgatgggagga 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2561460 cttttaaattactctcagaaccacattaatgttgaggtggacgaaggttcacgtggtaaatggcagttaacgggttattatggcttccccgatgggagga 2561559  T
Q  392 ggagaagagattcttgaaatttcatt 417  Q
    |||||||||||||||| |||||||||    
T  2561560 ggagaagagattcttggaatttcatt 2561585  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 148
Target Start/End: Original strand, 16408587 - 16408705
Alignment:
Q  27 agccaaggaatcatcaaccgatgatccttttctcatgttcttttattcgtatataattatgtgttaatttagaaatcatgaggagctaaatcctctctag 126  Q
    ||||||||||||||||| || |||||||||||||||| |   |||||| ||| |||||| || |   ||||||  | ||||| | || ||||||||||||    
T  16408587 agccaaggaatcatcaatcggtgatccttttctcatgcttacttattcatatctaattaggtat--gtttagatcttatgagtaact-aatcctctctag 16408683  T
Q  127 gtttgttcatgaaagaggaact 148  Q
    ||| | ||||||||||||||||    
T  16408684 gttaggtcatgaaagaggaact 16408705  T

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Target: chr8 (Bit Score: 142; Significance: 2e-74; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 13 - 195
Target Start/End: Original strand, 31080503 - 31080681
Alignment:
Q  13 cagagacactcgggagccaaggaatcatcaaccgatgatccttttctcatgttcttttattcgtatataattatgtgttaatttagaaatcatgaggagc 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    |||||||||||||||||    
T  31080503 cagagacactcgggagccaaggaatcatcaaccgatgatccttttctcatgttcttttattcatatataattatatgtt----tagaaatcatgaggagc 31080598  T
Q  113 taaatcctctctaggtttgttcatgaaagaggaacttcttcataattatttgttcatgtaactttatgattctatcaatattc 195  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||    
T  31080599 taaaccctctctaggtttgttcatgaaagaggaacttcctcataattatgtgttcatgtacctttatgattctatcaatattc 31080681  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 30 - 150
Target Start/End: Complemental strand, 31004542 - 31004424
Alignment:
Q  30 caaggaatcatcaaccgatgatccttttctcatgttcttttattcgtatataattatgtgttaatttagaaatcatgaggagctaaatcctctctaggtt 129  Q
    |||| ||||||||| || ||||| |||| |||||||||||||||| | || |||||| |||   ||||| ||||||||| |||||| | |||||||||||    
T  31004542 caagtaatcatcaatcgttgatcattttatcatgttcttttattcatgtacaattatatgtg--tttaggaatcatgagtagctaatttctctctaggtt 31004445  T
Q  130 tgttcatgaaagaggaacttc 150  Q
     | ||||||||||||||||||    
T  31004444 aggtcatgaaagaggaacttc 31004424  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 143
Target Start/End: Complemental strand, 10645268 - 10645154
Alignment:
Q  27 agccaaggaatcatcaaccgatgatccttttctcatgttcttttattcgtatataattatgtgttaatttagaaatcatgaggagctaaatcctctctag 126  Q
    |||||| |||||||||| || ||||||||||||||||||||||| ||| | ||||||||| ||  | ||||| | ||| ||| || ||||||||||| ||    
T  10645268 agccaatgaatcatcaatcggtgatccttttctcatgttcttttgttcatgtataattatatg--agtttagtactcacgagtagataaatcctctccag 10645171  T
Q  127 gtttgttcatgaaagag 143  Q
    ||  | |||||||||||    
T  10645170 gtcaggtcatgaaagag 10645154  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 178
Target Start/End: Original strand, 17849980 - 17850108
Alignment:
Q  48 tgatccttttctcatgttcttttattcgtatataattatgtgttaatttagaaatcatgaggagctaaatcctctctaggtttgttcatgaaagaggaac 147  Q
    |||||||||||| ||||| | || ||| ||||||||||| |||  |||||||| |||||||   ||||||||||| |||||| | || | |||||||||     
T  17849980 tgatccttttcttatgttttattgttcatatataattatatgt--atttagaagtcatgagtttctaaatcctctataggttaggtcgtaaaagaggaat 17850077  T
Q  148 ttcttcataattatttgttcatgtaacttta 178  Q
    |||    ||||||||| ||| ||||||||||    
T  17850078 ttccctgtaattatttattcttgtaacttta 17850108  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 155625 - 155678
Alignment:
Q  27 agccaaggaatcatcaaccgatgatccttttctcatgttcttttattcgtatata 81  Q
    |||||| ||||||||||  | ||||||||||||||||||||||||||| ||||||    
T  155625 agccaaagaatcatcaattg-tgatccttttctcatgttcttttattcatatata 155678  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 26470580 - 26470629
Alignment:
Q  25 ggagccaaggaatcatcaaccgatgatccttttctcatgttcttttattc 74  Q
    |||||||| ||||||||||| | |||||||||||||||| | ||||||||    
T  26470580 ggagccaatgaatcatcaacgggtgatccttttctcatgctattttattc 26470629  T

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Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 26 - 178
Target Start/End: Complemental strand, 26807717 - 26807567
Alignment:
Q  26 gagccaaggaatcatcaaccgatgatccttttctcatgttcttttattcgtatataattatgtgttaatttagaaatcatgaggagctaaatcctctcta 125  Q
    |||||||| |||||||||  ||| |||||||||||||||| |||||||| | |||| |||| |||   ||||||||||||||| | ||||||||||||||    
T  26807717 gagccaagtaatcatcaaatgataatccttttctcatgttattttattcatgtatagttatatgtg--tttagaaatcatgagtatctaaatcctctcta 26807620  T
Q  126 ggtttgttcatgaaagaggaacttcttcataattatttgttcatgtaacttta 178  Q
    |||| | |||||||| || ||||||    ||||||||||||||||||||||||    
T  26807619 ggttaggtcatgaaacagaaacttccgtgtaattatttgttcatgtaacttta 26807567  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 178
Target Start/End: Original strand, 13782894 - 13782978
Alignment:
Q  94 tttagaaatcatgaggagctaaatcctctctaggtttgttcatgaaagaggaacttcttcataattatttgttcatgtaacttta 178  Q
    ||||||||| ||||| |||||||||||| ||||||| |   ||||||||||||||||    |||||||| ||||||||| |||||    
T  13782894 tttagaaattatgagtagctaaatcctccctaggttagagtatgaaagaggaacttccctgtaattattagttcatgtagcttta 13782978  T

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Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 16801867 - 16801990
Alignment:
Q  54 ttttctcatgttcttttattcgtatataattatgtgttaatttagaaatcatgaggagctaaatcctctctaggtttgttcatgaaagaggaacttcttc 153  Q
    |||||||||||||| |||||| ||||||||||| |||    |||||||||||||| |||||||| |||||||||||   |||||||| ||||| || |      
T  16801867 ttttctcatgttctcttattcatatataattatatgtgc--ttagaaatcatgagtagctaaatactctctaggttaagtcatgaaaaaggaatttttct 16801964  T
Q  154 ataattatttgttcatgtaactttat 179  Q
     |||||||||||||||||||||||||    
T  16801965 gtaattatttgttcatgtaactttat 16801990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 16841153 - 16841276
Alignment:
Q  54 ttttctcatgttcttttattcgtatataattatgtgttaatttagaaatcatgaggagctaaatcctctctaggtttgttcatgaaagaggaacttcttc 153  Q
    |||||||||||||| |||||| ||||||||||| |||    |||||||||||||| |||||||| |||||||||||   |||||||| ||||| || |      
T  16841153 ttttctcatgttctcttattcatatataattatatgtgc--ttagaaatcatgagtagctaaatactctctaggttaagtcatgaaaaaggaatttttct 16841250  T
Q  154 ataattatttgttcatgtaactttat 179  Q
     |||||||||||||||||||||||||    
T  16841251 gtaattatttgttcatgtaactttat 16841276  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 29572615 - 29572578
Alignment:
Q  22 tcgggagccaaggaatcatcaaccgatgatccttttct 59  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  29572615 tcgggagccaaggaatcatcaacagatgatccttttct 29572578  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 110
Target Start/End: Original strand, 23650600 - 23650673
Alignment:
Q  35 aatcatcaaccgatgatccttttctcatgttcttttattcgtatataattatgtgttaatttagaaatcatgagga 110  Q
    ||||||||| || |||||||||||||||||| |||||||| |||| || ||| |||   |||||||||||||||||    
T  23650600 aatcatcaatcggtgatccttttctcatgttattttattcatatacaaatatatgt--gtttagaaatcatgagga 23650673  T

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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 20784728 - 20784792
Alignment:
Q  19 cactcgggagccaaggaatcatcaaccgatgatccttttctcatgttcttttattcgtatataat 83  Q
    |||| ||||||||||||||||||||| | |||||||||| |||||||||||||||| ||||||||    
T  20784728 cacttgggagccaaggaatcatcaactggtgatccttttatcatgttcttttattcatatataat 20784792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 24 - 178
Target Start/End: Original strand, 39492582 - 39492735
Alignment:
Q  24 gggagccaaggaatcatcaaccgatgatccttttctcatgttcttttattcgtatataattatgtgttaatttagaaa-tcatgaggagctaaatcctct 122  Q
    |||||||||| ||||||||||| || |||||||||| |||||||||||||| ||||||| |||  ||   |||| ||| |||||||| ||||| ||||||    
T  39492582 gggagccaagcaatcatcaacccataatccttttcttatgttcttttattcatatataaatatacgt--gtttaaaaattcatgaggggctaattcctct 39492679  T
Q  123 ctaggtttgttcatgaaagaggaacttcttcataattatttgttcatgtaacttta 178  Q
    |||||||   | ||||||||| |||||| |  |||||| |  ||||||||||||||    
T  39492680 ctaggttaagttatgaaagagaaacttccttgtaattaatcattcatgtaacttta 39492735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 9934847 - 9934884
Alignment:
Q  19 cactcgggagccaaggaatcatcaaccgatgatccttt 56  Q
    |||| |||||||||| ||||||||||||||||||||||    
T  9934847 cacttgggagccaagtaatcatcaaccgatgatccttt 9934884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 178
Target Start/End: Complemental strand, 26150508 - 26150362
Alignment:
Q  28 gccaaggaatcatcaaccgatgatccttttctcatgttcttttattcgtatataattatgtgttaatttagaaatcatgaggagctaaatcctctctagg 127  Q
    ||||| |||||||| | | |||| ||||||||| |||| | ||||||  |||||||||||||||    ||||||| ||||| ||||||||||||| |  |    
T  26150508 gccaaagaatcatctatcaatgacccttttctcttgttttcttattcaaatataattatgtgtt----tagaaattatgagtagctaaatcctctatttg 26150413  T
Q  128 tttgttcatgaaagaggaacttcttcataattatttgttcatgtaacttta 178  Q
    || | || ||||||  |||||| |  |||||||||||||||||||||||||    
T  26150412 ttaggtcttgaaagttgaacttttcaataattatttgttcatgtaacttta 26150362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 1825480 - 1825532
Alignment:
Q  22 tcgggagccaaggaatcatcaaccgatgatccttttctcatgttcttttattc 74  Q
    |||||| ||||  ||||||||||||| ||||||||||||||||| | ||||||    
T  1825480 tcgggaaccaaataatcatcaaccgaagatccttttctcatgttttcttattc 1825532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 12673599 - 12673563
Alignment:
Q  27 agccaaggaatcatcaaccgatgatccttttctcatg 63  Q
    |||||||||||||||||  ||||||||||||||||||    
T  12673599 agccaaggaatcatcaattgatgatccttttctcatg 12673563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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