View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11550_low_5 (Length: 385)
Name: NF11550_low_5
Description: NF11550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11550_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 14 - 371
Target Start/End: Complemental strand, 3526710 - 3526353
Alignment:
| Q |
14 |
aggaggggtcacttcttcaattgtcactgatgtatctcctaatgctagtgctgtacatttacaatttatctcataatgagaaactttgctagtaaataat |
113 |
Q |
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| T |
3526710 |
aggaggggtcacttcttcaattgtcactgatgtatctcctaatgctagtgctgtacatttacaatttatctcataatgagaaactttgctagtaaataat |
3526611 |
T |
|
| Q |
114 |
aagagacttctattataaaatcgaacaaggaaagagcatagaaaattagaaaacaaagcagccagaactctgtactctaccaatttcatatttacaattg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3526610 |
aagagacttctattataaaatcgaacaaggaaagagcatagaaaattagaaaacaaagcaaccagaactctgtactctaccaatttcatatttacaattg |
3526511 |
T |
|
| Q |
214 |
atgtcataacatcaatgttgtcaaccactgatcgcaaaaataacagtttattcaactctgctatgctgtagtgttatatcggctatagccgctaagttga |
313 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3526510 |
atgtcataacatcagtgttgtcaaccactgatcgcaaaaataacagtttattcaactctgctatgctgtagtgttatatcggctatagccgctaagttga |
3526411 |
T |
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| Q |
314 |
acgaaatagcgtatcaaggaacaatagtggtttgttcaaactatgctatgttatagct |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3526410 |
acgaaatagcgtatcaaggaacaatagtggtttgttcaaactatgctatgttatagct |
3526353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 353
Target Start/End: Complemental strand, 24743057 - 24743021
Alignment:
| Q |
317 |
aaatagcgtatcaaggaacaatagtggtttgttcaaa |
353 |
Q |
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||||||||||||| |||||||||||||||||||||| |
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| T |
24743057 |
aaatagcgtatcacagaacaatagtggtttgttcaaa |
24743021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 353
Target Start/End: Complemental strand, 7991556 - 7991520
Alignment:
| Q |
317 |
aaatagcgtatcaaggaacaatagtggtttgttcaaa |
353 |
Q |
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|||| |||||||| ||||||||||||||||||||||| |
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| T |
7991556 |
aaatggcgtatcacggaacaatagtggtttgttcaaa |
7991520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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