View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11550_low_7 (Length: 359)
Name: NF11550_low_7
Description: NF11550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11550_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 20 - 353
Target Start/End: Complemental strand, 1687219 - 1686886
Alignment:
| Q |
20 |
ctttgcaaaagggttcaagagttttaccaaatttattctttctctttttactcttttcctcttacacattattggaaaatttcctccaattcttctattc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1687219 |
ctttgcaaaagggttcaagagttttaccaaatttattctttctctttttactcttttcctcttacacattattggaaaatttcctccaattcttctattc |
1687120 |
T |
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| Q |
120 |
tcaacaagacataaagatgacaatgaagtcattttttggtaactttgtagtgaattgtattcgatagcatatacattagttatggttgaactctcaaatc |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
1687119 |
tcaacaagacataaagatgacaatgaagtcattttttggtaactttgtagtgaattgtattcgatagcagatacattagttatggttgaactctcaaatc |
1687020 |
T |
|
| Q |
220 |
cactcttctcaatctttgtattgttgaaattttccaaaaatggtaaagagatggaatttccatcatcaacaaataatggtcgttgacactcagaagtctt |
319 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1687019 |
cactcttctcaatctttgtattgttgaaatttaacaaaaatggtaaagagatggaatttccatcatcaacaaataatggtcgttgacactcacaagtctt |
1686920 |
T |
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| Q |
320 |
agcactctttctaacataacttttcctctgcttc |
353 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
1686919 |
agcactctttctaacataacttttcctctgcttc |
1686886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 146; Significance: 7e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 20 - 349
Target Start/End: Complemental strand, 41918343 - 41918014
Alignment:
| Q |
20 |
ctttgcaaaagggttcaagagttttaccaaatttattctttctctttttactcttttcctcttacacattattggaaaatttcctccaattcttctattc |
119 |
Q |
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||||||||| ||| |||||||||||||||| |||||||||||||| | ||||||||||| ||||||||||||||||||||| ||||||||| ||| || |
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| T |
41918343 |
ctttgcaaacgggggcaagagttttaccaaacttattctttctcttctaactcttttccttttacacattattggaaaattttgtccaattctcctactc |
41918244 |
T |
|
| Q |
120 |
tcaacaagacataaagatgacaatgaagtcattttttggtaactttgtagtgaattgtattcgatagcatatacattagttatggttgaactctcaaatc |
219 |
Q |
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||||| ||||||||| ||||||||||| |||||| || |||||||||| ||||||||| |||| || || |||||||||| |||||| | ||||||| |
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| T |
41918243 |
tcaactagacataaacctgacaatgaagacattttctgataactttgtaccgaattgtatacgatgccagattcattagttatagttgaattttcaaatc |
41918144 |
T |
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| Q |
220 |
cactcttctcaatctttgtattgttgaaattttccaaaaatggtaaagagatggaatttccatcatcaacaaataatggtcgttgacactcagaagtctt |
319 |
Q |
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||| || | || ||||| || ||||||| |||||||||||| ||||||||||||| ||||||||| ||||||||||| ||||||||||| | |||| |
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| T |
41918143 |
caccctgataaacctttgaatctttgaaatattccaaaaatgggaaagagatggaatctccatcatcgacaaataatggcttttgacactcaggaatctt |
41918044 |
T |
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| Q |
320 |
agcactctttctaacataacttttcctctg |
349 |
Q |
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||| ||||||||||||||||||||||||| |
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| T |
41918043 |
ggcagtctttctaacataacttttcctctg |
41918014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 353
Target Start/End: Complemental strand, 41917966 - 41917938
Alignment:
| Q |
325 |
tctttctaacataacttttcctctgcttc |
353 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
41917966 |
tctttctaacataacttttcctctgcttc |
41917938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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