View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11550_low_8 (Length: 309)
Name: NF11550_low_8
Description: NF11550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11550_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 20 - 280
Target Start/End: Original strand, 41255167 - 41255427
Alignment:
| Q |
20 |
ttgggttcttattaaacttaatcacgaccctataagacctactaatagcatcaaagtccatttagacttgatagtcacgttcaaccatcaacaactggtt |
119 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41255167 |
ttgggttcttattaaacttaatcacaaccctataagacctactaatagcatcaaagtccatttagacttgatagtcacgttcaaccatcaacaactggtt |
41255266 |
T |
|
| Q |
120 |
tcaattatgcatcaaatgatttcaaagttagatgattgtaatgcagctaatatgcaaatattttcaataagggttataacattctttttaacctatatag |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41255267 |
tcaattatgcatcaaatgatttcaaagttagatgattgtaatgcagctaatatgcaaatattttcaataagggttataacattctttttaacctatatag |
41255366 |
T |
|
| Q |
220 |
acttggtagcctcgttcaaccgtcaatcaattcagttgtcagtcgattcacaccatcaact |
280 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
41255367 |
acttggtagtctcgttcaaccgtcaatcaattcagatgtcagtcgattcacaccatcaact |
41255427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University