View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11551_low_1 (Length: 373)

Name: NF11551_low_1
Description: NF11551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11551_low_1
NF11551_low_1
[»] chr7 (2 HSPs)
chr7 (12-361)||(30068265-30068615)
chr7 (12-361)||(45137937-45138287)
[»] chr3 (2 HSPs)
chr3 (9-361)||(18985991-18986346)
chr3 (7-361)||(52382009-52382347)
[»] scaffold0007 (2 HSPs)
scaffold0007 (126-361)||(78795-79048)
scaffold0007 (12-71)||(78630-78689)
[»] chr8 (2 HSPs)
chr8 (76-127)||(36992853-36992904)
chr8 (77-123)||(37002777-37002823)
[»] chr1 (1 HSPs)
chr1 (257-358)||(39072524-39072625)


Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 12 - 361
Target Start/End: Complemental strand, 30068615 - 30068265
Alignment:
Q  12 aactaaataatcatttatatgctttattataatatttcagtatttaccttgaactcaacattaacttgacatatgtgtataagagaaggggtaaaatggg 111  Q
    ||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  30068615 aactaaataatcatttatatgctttatcatataatttcagtatttaccttgaactcaacattaacttgacatatgtgtataagagaagtggtaaaatggg 30068516  T
Q  112 aagcaaagaagagaaataatgccctggacaaaaccacaaacaacttaatatatcagctgcaagtgcgagnnnnnnn-gaatgttaatttctattacttat 210  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||        ||||||||||| |||||||||||    
T  30068515 aagcaaagaagagaaataatgccctggacaaaaccacagacaacttaatatatcagctgcaagtgtgagaaaaaaaagaatgttaattcctattacttat 30068416  T
Q  211 tagttcagcagctacctgttcatgtgtaaagttatcgtctggttcatcattacaaattgcgaaagacttccttatacaccacatttgatgtagtgctcat 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30068415 tagttcagcagctacctgttcatgtgtaaagttatcgtctggttcatcattacaaattgcgaaagacttccttatacaccacatttgatgtagtgctcat 30068316  T
Q  311 acaattgccatcttcatccgtgcataatatcttcaatccgtttcttgatgt 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30068315 acaattgccatcttcatccgtgcataatatcttcaatccgtttcttgatgt 30068265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 12 - 361
Target Start/End: Complemental strand, 45138287 - 45137937
Alignment:
Q  12 aactaaataatcatttatatgctttattataatatttcagtatttaccttgaactcaacattaacttgacatatgtgtataagagaaggggtaaaatggg 111  Q
    ||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  45138287 aactaaataatcatttatatgctttatcatataatttcagtatttaccttgaactcaacattaacttgacatatgtgtataagagaagtggtaaaatggg 45138188  T
Q  112 aagcaaagaagagaaataatgccctggacaaaaccacaaacaacttaatatatcagctgcaagtgcgagnnnnnnn-gaatgttaatttctattacttat 210  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||        ||||||||||| |||||||||||    
T  45138187 aagcaaagaagagaaataatgccctggacaaaaccacagacaacttaatatatcagctgcaagtgtgagaaaaaaaagaatgttaattcctattacttat 45138088  T
Q  211 tagttcagcagctacctgttcatgtgtaaagttatcgtctggttcatcattacaaattgcgaaagacttccttatacaccacatttgatgtagtgctcat 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45138087 tagttcagcagctacctgttcatgtgtaaagttatcgtctggttcatcattacaaattgcgaaagacttccttatacaccacatttgatgtagtgctcat 45137988  T
Q  311 acaattgccatcttcatccgtgcataatatcttcaatccgtttcttgatgt 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45137987 acaattgccatcttcatccgtgcataatatcttcaatccgtttcttgatgt 45137937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 9 - 361
Target Start/End: Original strand, 18985991 - 18986346
Alignment:
Q  9 cacaactaaataatcatttatatgctttattataatatttcagtatttaccttgaactcaacattaacttgacatatgtgtataagagaaggggtaaaat 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18985991 cacaactaaataatcatttatatgctttattataatatttcagtatttaccttgaactcaacattaacttgacatatgtgtataagagaaggggtaaaat 18986090  T
Q  109 gggaagcaaagaagagaaataatgccctggacaaaaccacaaacaacttaatatatcagctgcaagtgcgag---nnnnnnngaatgttaatttctatta 205  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||          ||||||||||||||||||    
T  18986091 gggaagcaaagaggagaaataatgccctggacaaaaccacaaacaacctaatatatcagctgcaagtgtgagagaaaaaaaagaatgttaatttctatta 18986190  T
Q  206 cttattagttcagcagctacctgttcatgtgtaaagttatcgtctggttcatcattacaaattgcgaaagacttccttatacaccacatttgatgtagtg 305  Q
    |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18986191 cttattagattagcagctacctgttcatgtgtaaagttatcgtctggttcatcattacaaattgcgaaagacttccttatacaccacatttgatgtagtg 18986290  T
Q  306 ctcatacaattgccatcttcatccgtgcataatatcttcaatccgtttcttgatgt 361  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  18986291 ctcatacaattgccatcttcatctgtgcataatatcttcaatccttttcttgatgt 18986346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 7 - 361
Target Start/End: Complemental strand, 52382347 - 52382009
Alignment:
Q  7 aacacaactaaataatcatttatatgctttattataatatttcagtatttaccttgaactcaacattaacttgacatatgtgtataagagaaggggtaaa 106  Q
    |||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||    
T  52382347 aacataactaaataatcatttagatgctttattataaaatttcagtatttaccttgaacgcaacatgaacttgacatatgtgtataagagaaggagtaaa 52382248  T
Q  107 atgggaagcaaagaagagaaataatgccctggacaaaaccacaaacaacttaatatatcagctgcaagtgcgag--nnnnnnngaatgttaatttctatt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||         |||||||||||||||||    
T  52382247 atgggaagcaaagaagagaaataatgccctggacaaaaccacaaacaacttaatatatcagctgcaagttcgagaaaaaaaaagaatgttaatttctatt 52382148  T
Q  205 acttattagttcagcagctacctgttcatgtgtaaagttatcgtctggttcatcattacaaattgcgaaagacttccttatacaccacatttgatgtagt 304  Q
    |||||||||||||||||||||||||||||||||||||||||||             |||     ||||||||||||||||||||||||||||||||||||    
T  52382147 acttattagttcagcagctacctgttcatgtgtaaagttatcg-------------tac-----gcgaaagacttccttatacaccacatttgatgtagt 52382066  T
Q  305 gctcatacaattgccatcttcatccgtgcataatatcttcaatccgtttcttgatgt 361  Q
    |||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||    
T  52382065 gctcatacaattgccatcttcaaccgtcaataatatcttcaatccgtttcttgatgt 52382009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 126 - 361
Target Start/End: Original strand, 78795 - 79048
Alignment:
Q  126 aataatgccctggacaaaaccacaaacaacttaatatatcagctgcaag---tgcgagnnnnnnngaatgttaatttctattacttattagttcagcagc 222  Q
    ||||||||||| |||||||  |||||||||||||||||||||||||||    ||||||        ||||||||||||||||| |||||||| |||||||    
T  78795 aataatgccctagacaaaagtacaaacaacttaatatatcagctgcaaccactgcgagaaaaaaaaaatgttaatttctattaattattagtccagcagc 78894  T
Q  223 tacctgttcatgtgtaaagttatcgtc---------------tggttcatcattacaaattgcgaaagacttccttatacaccacatttgatgtagtgct 307  Q
     |||| || ||||||||| |||||||                |||| ||||||||||||||||| |||||||| ||| |||||| |||||||||||||||    
T  78895 aacctatttatgtgtaaatttatcgtaggacaccaacagcgttggtgcatcattacaaattgcggaagacttctttaaacaccaaatttgatgtagtgct 78994  T
Q  308 catacaattgccatcttcatccgtgcataatatcttcaatccgtttcttgatgt 361  Q
    ||| ||||||||||||||||||||  |||||||||||||| |||||||||||||    
T  78995 catgcaattgccatcttcatccgtcaataatatcttcaattcgtttcttgatgt 79048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 78630 - 78689
Alignment:
Q  12 aactaaataatcatttatatgctttattataatatttcagtatttaccttgaactcaaca 71  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||    
T  78630 aactaaataatcatttagatgctttattataatatttcagtatttacctttaacgcaaca 78689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 76 - 127
Target Start/End: Original strand, 36992853 - 36992904
Alignment:
Q  76 cttgacatatgtgtataagagaaggggtaaaatgggaagcaaagaagagaaa 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36992853 cttgacatatgtgtataagagaaggggtaaaatgggaagcaaagaagagaaa 36992904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 123
Target Start/End: Original strand, 37002777 - 37002823
Alignment:
Q  77 ttgacatatgtgtataagagaaggggtaaaatgggaagcaaagaaga 123  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||    
T  37002777 ttgacacatgtgtataagagaaggggtaaaatgggaagcaaagaaga 37002823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 358
Target Start/End: Original strand, 39072524 - 39072625
Alignment:
Q  257 tcattacaaattgcgaaagacttccttatacaccacatttgatgtagtgctcatacaattgccatcttcatccgtgcataatatcttcaatccgtttctt 356  Q
    ||||||||||||||| || || || || || |  ||||||||||||||  ||||||||| |||||||||||| ||  |||  || |||||||||||||||    
T  39072524 tcattacaaattgcggaatacctctttgtaaatgacatttgatgtagtattcatacaatggccatcttcatctgtcaatagaattttcaatccgtttctt 39072623  T
Q  357 ga 358  Q
    ||    
T  39072624 ga 39072625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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