View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11551_low_2 (Length: 363)
Name: NF11551_low_2
Description: NF11551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11551_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 13 - 330
Target Start/End: Original strand, 41415873 - 41416187
Alignment:
| Q |
13 |
agaaactactcatagcaaaagaaaattaaatcactaattcctcctaaaattgttgtagaggatttacacatctcaaacttacgaatagatgaagnnnnnn |
112 |
Q |
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| T |
41415873 |
agaaactactcatagcaaaagaaaattaaatcactaattcctcctaaaattgttgtagaggatttacacatctcaaacttacgaatagatgaagaaaaaa |
41415972 |
T |
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| Q |
113 |
nnnnnncctcaaatttgaataacattgaatacgttgctatttctgttaacttgtaataactggtttgatagtaagtttagggactaatttgctaataaac |
212 |
Q |
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| T |
41415973 |
aaa---cctcaaatttgaacaacattgaatacgttgctatttctgttaacttgtaatcactggtttgatagtaagtttagggactaatttgctaataaac |
41416069 |
T |
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| Q |
213 |
catataatccaagactagtttactagtaaattaattttataattcaagagcttatttgatagtaaatttagcaagatgatcaagttcctcgacataattt |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
41416070 |
catataatccaagactagtttactagtaaattaattttatatttcaagagcttatttgatagtaaatttagcaagatgatcaagttcttcgacataattt |
41416169 |
T |
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| Q |
313 |
aaaatttaagtctttttt |
330 |
Q |
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||||||||||| |||||| |
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| T |
41416170 |
aaaatttaagtatttttt |
41416187 |
T |
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