View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11551_low_4 (Length: 291)

Name: NF11551_low_4
Description: NF11551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11551_low_4
NF11551_low_4
[»] chr6 (8 HSPs)
chr6 (1-181)||(31609571-31609750)
chr6 (180-274)||(31609382-31609476)
chr6 (45-100)||(10009598-10009653)
chr6 (37-100)||(708976-709039)
chr6 (37-100)||(7100225-7100288)
chr6 (37-100)||(8794342-8794405)
chr6 (37-77)||(5957187-5957227)
chr6 (181-229)||(5957431-5957478)
[»] chr7 (13 HSPs)
chr7 (40-185)||(34115347-34115493)
chr7 (181-274)||(34115162-34115254)
chr7 (41-100)||(15913371-15913430)
chr7 (37-185)||(37649570-37649718)
chr7 (41-185)||(42678067-42678213)
chr7 (37-76)||(21066843-21066882)
chr7 (37-95)||(26201527-26201585)
chr7 (39-95)||(12253356-12253412)
chr7 (41-76)||(5572538-5572573)
chr7 (37-100)||(41060046-41060109)
chr7 (41-93)||(3634278-3634330)
chr7 (40-100)||(9599025-9599085)
chr7 (40-100)||(9826596-9826656)
[»] scaffold0472 (1 HSPs)
scaffold0472 (37-185)||(1759-1908)
[»] chr2 (7 HSPs)
chr2 (38-161)||(3858093-3858208)
chr2 (37-100)||(18176429-18176492)
chr2 (181-256)||(18176176-18176251)
chr2 (37-100)||(36598427-36598490)
chr2 (37-75)||(37981683-37981721)
chr2 (37-77)||(2288520-2288560)
chr2 (39-95)||(35172604-35172660)
[»] chr8 (4 HSPs)
chr8 (41-165)||(39039014-39039140)
chr8 (37-100)||(14061607-14061670)
chr8 (37-77)||(24317972-24318012)
chr8 (39-95)||(43488969-43489025)
[»] chr5 (10 HSPs)
chr5 (66-185)||(36681985-36682105)
chr5 (37-88)||(26806548-26806599)
chr5 (37-77)||(26795616-26795656)
chr5 (37-88)||(26795484-26795535)
chr5 (37-93)||(378294-378350)
chr5 (37-77)||(2276188-2276228)
chr5 (41-77)||(26806680-26806716)
chr5 (37-77)||(39753496-39753536)
chr5 (39-77)||(9689319-9689357)
chr5 (37-77)||(28594425-28594465)
[»] chr4 (6 HSPs)
chr4 (37-100)||(28100542-28100605)
chr4 (37-185)||(44646782-44646922)
chr4 (37-77)||(37370870-37370910)
chr4 (37-100)||(38230833-38230896)
chr4 (41-100)||(53271974-53272033)
chr4 (40-77)||(1848510-1848547)
[»] chr3 (13 HSPs)
chr3 (181-256)||(45215108-45215183)
chr3 (37-185)||(45215275-45215424)
chr3 (37-88)||(10225641-10225692)
chr3 (38-77)||(44042028-44042067)
chr3 (37-77)||(10104997-10105037)
chr3 (37-77)||(10216144-10216184)
chr3 (37-88)||(10104865-10104916)
chr3 (37-100)||(12103362-12103425)
chr3 (40-77)||(10055767-10055804)
chr3 (37-77)||(10216023-10216063)
chr3 (41-77)||(10225773-10225809)
chr3 (37-88)||(46749312-46749363)
chr3 (40-77)||(45926928-45926965)
[»] chr1 (13 HSPs)
chr1 (181-256)||(51826543-51826618)
chr1 (123-185)||(19893588-19893650)
chr1 (41-76)||(4288998-4289033)
chr1 (37-100)||(48203409-48203472)
chr1 (37-80)||(51826816-51826859)
chr1 (37-77)||(27198332-27198372)
chr1 (37-100)||(48194651-48194714)
chr1 (37-95)||(19007544-19007602)
chr1 (39-77)||(52179674-52179712)
chr1 (37-78)||(14229033-14229074)
chr1 (37-70)||(14555301-14555334)
chr1 (1-73)||(42657740-42657811)
chr1 (40-88)||(19893515-19893563)
[»] scaffold0287 (1 HSPs)
scaffold0287 (41-93)||(11755-11807)


Alignment Details
Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 31609750 - 31609571
Alignment:
Q  1 gattttaaaagactttttaattataannnnnnnnnngtggtattcaatcaagacttttatagaatataaataaatctcatagtattcagtcaagataatc 100  Q
    ||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31609750 gattttaaaagactttttaattataaaaaaatctt-gtggtattcaatcaagacttttatagaatataaataaatctcatagtattcagtcaagataatc 31609652  T
Q  101 nnnnnnntttattcaggcaactaaatctcattgtattcaatcaagatttgtaccaacttataaaatatttatcggtattta 181  Q
           |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| | ||| ||||||||    
T  31609651 aaaaaaatttattcaggcaactaaatctcatggtatttaatcaagatttgtaccaacttataaaatgtctatgggtattta 31609571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 180 - 274
Target Start/End: Complemental strand, 31609476 - 31609382
Alignment:
Q  180 taaaaaaccttgagactttttgagacatccataacttttgttttgtctttgtctcatacactcacaatcatagcctcaacttattattccttgat 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||| |||||||||||||||||    
T  31609476 taaaaaaccttgagactttttgagacatccataacttttgttttgtctttgtttcatacccccacaatcatagcctctacttattattccttgat 31609382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 100
Target Start/End: Complemental strand, 10009653 - 10009598
Alignment:
Q  45 caatcaagacttttatagaatataaataaatctcatagtattcagtcaagataatc 100  Q
    ||||||||| |||||||||||||||||||||||  | ||||||| |||||||||||    
T  10009653 caatcaagatttttatagaatataaataaatcttgtggtattcaatcaagataatc 10009598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 100
Target Start/End: Original strand, 708976 - 709039
Alignment:
Q  37 gtggtattcaatcaagacttttatagaatataaataaatctcatagtattcagtcaagataatc 100  Q
    ||||||||||||||| ||||||||| ||| |||||||||||  | ||||||| |||||| ||||    
T  708976 gtggtattcaatcaaaacttttataaaatgtaaataaatcttgtggtattcaatcaagacaatc 709039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 100
Target Start/End: Original strand, 7100225 - 7100288
Alignment:
Q  37 gtggtattcaatcaagacttttatagaatataaataaatctcatagtattcagtcaagataatc 100  Q
    ||||||||||||||||||||||||| ||| |||| ||||||  | ||||||| |||||| ||||    
T  7100225 gtggtattcaatcaagacttttataaaatctaaacaaatcttgtggtattcaatcaagacaatc 7100288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 100
Target Start/End: Complemental strand, 8794405 - 8794342
Alignment:
Q  37 gtggtattcaatcaagacttttatagaatataaataaatctcatagtattcagtcaagataatc 100  Q
    ||||||||||||||||||||||||| ||| |||| ||||||  | ||||||| |||||| ||||    
T  8794405 gtggtattcaatcaagacttttataaaatctaaacaaatcttgtggtattcaatcaagacaatc 8794342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 5957187 - 5957227
Alignment:
Q  37 gtggtattcaatcaagacttttatagaatataaataaatct 77  Q
    ||||||||||||||||||||||||| ||| |||| ||||||    
T  5957187 gtggtattcaatcaagacttttataaaatgtaaacaaatct 5957227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 5957431 - 5957478
Alignment:
Q  181 aaaaaaccttgagactttttgagacatccataacttttgttttgtcttt 229  Q
    |||||||||||||||||||||||||||| || | ||||||||| |||||    
T  5957431 aaaaaaccttgagactttttgagacatctat-atttttgttttttcttt 5957478  T

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Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 40 - 185
Target Start/End: Complemental strand, 34115493 - 34115347
Alignment:
Q  40 gtattcaatcaagacttttatagaatataaataaatctcatagtattcagtcaagataatcnnnnnnntttattca-ggcaactaaatctcattgtattc 138  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||||| | ||||  |||       |||||||| || ||| ||||||||| ||||||    
T  34115493 gtattcaatcaagacttttatggaatataaataaatctcatggtattcaattaagacgatcaaatttttttattcaaggtaaccaaatctcatggtattc 34115394  T
Q  139 aatcaagatttgtaccaacttataaaatatttatcggtatttaaaaa 185  Q
    |||||||||||||||||||||||||||| ||||| |||||| |||||    
T  34115393 aatcaagatttgtaccaacttataaaatgtttataggtattcaaaaa 34115347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 181 - 274
Target Start/End: Complemental strand, 34115254 - 34115162
Alignment:
Q  181 aaaaaaccttgagactttttgagacatccataacttttgttttgtctttgtctcatacactcacaatcatagcctcaacttattattccttgat 274  Q
    |||||||||| | |||||||||||||||||||||||||| |||||||||||||||||| | || |||||||||||| |||||||||||||||||    
T  34115254 aaaaaaccttaaaactttttgagacatccataacttttgatttgtctttgtctcatac-cccagaatcatagcctctacttattattccttgat 34115162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 41 - 100
Target Start/End: Complemental strand, 15913430 - 15913371
Alignment:
Q  41 tattcaatcaagacttttatagaatataaataaatctcatagtattcagtcaagataatc 100  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||    
T  15913430 tattcaatcaagacttttatagaatataaataaatctcatggcattcaatcaagataatc 15913371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 185
Target Start/End: Complemental strand, 37649718 - 37649570
Alignment:
Q  37 gtggtattcaatcaagacttttatagaatataaataaatctcatagtattcagtcaagataatcnnnnnnntttattc-aggcaactaaatctcattgta 135  Q
    |||||||||||| ||||||||||||||| |||| |||||||||| ||||||| |||| | ||||       ||||||| ||||||| ||||| ||| |||    
T  37649718 gtggtattcaat-aagacttttatagaacataagtaaatctcatggtattcaatcaacacaatcaagattttttattcaaggcaaccaaatcccatggta 37649620  T
Q  136 ttcaatcaagatttgtaccaacttataaaatatttatcggtatttaaaaa 185  Q
    ||| ||  |||||| |||||||||||||||| | ||| |||||| |||||    
T  37649619 ttcgattgagatttctaccaacttataaaatgtctattggtattcaaaaa 37649570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 41 - 185
Target Start/End: Complemental strand, 42678213 - 42678067
Alignment:
Q  41 tattcaatcaagacttttatagaatataaataaatctcatagtattcagtcaagataatcnnnnnnnttt-attcagg-caactaaatctcattgtattc 138  Q
    |||||||| |||||||||||  || ||||||||||||||| ||||||| |||||| ||||       ||| ||| ||| |||| ||||  ||| ||||||    
T  42678213 tattcaattaagacttttatgaaacataaataaatctcatggtattcaatcaagacaatcaagacttttttattgagggcaaccaaattccatggtattc 42678114  T
Q  139 aatcaagatttgtaccaacttataaaatatttatcggtatttaaaaa 185  Q
    ||| |||||||||||||||||||||||| | ||| |||||| |||||    
T  42678113 aattaagatttgtaccaacttataaaatgtctattggtattcaaaaa 42678067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 76
Target Start/End: Original strand, 21066843 - 21066882
Alignment:
Q  37 gtggtattcaatcaagacttttatagaatataaataaatc 76  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  21066843 gtggtattcaatcaagacttttatagaatataaataaatc 21066882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 95
Target Start/End: Complemental strand, 26201585 - 26201527
Alignment:
Q  37 gtggtattcaatcaagacttttatagaatataaataaatctcatagtattcagtcaaga 95  Q
    |||||||||| |||||||||||||| |||||||||||||||||| | ||||| ||||||    
T  26201585 gtggtattcattcaagacttttataaaatataaataaatctcatgggattcaatcaaga 26201527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 12253412 - 12253356
Alignment:
Q  39 ggtattcaatcaagacttttatagaatataaataaatctcatagtattcagtcaaga 95  Q
    |||||| ||||||||||||||| |||| ||||||||||| || ||||||| ||||||    
T  12253412 ggtattgaatcaagacttttatggaatctaaataaatcttatggtattcaatcaaga 12253356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 76
Target Start/End: Complemental strand, 5572573 - 5572538
Alignment:
Q  41 tattcaatcaagacttttatagaatataaataaatc 76  Q
    ||||||||||||||||||||| ||||||||||||||    
T  5572573 tattcaatcaagacttttataaaatataaataaatc 5572538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 100
Target Start/End: Original strand, 41060046 - 41060109
Alignment:
Q  37 gtggtattcaatcaagacttttatagaatataaataaatctcatagtattcagtcaagataatc 100  Q
    ||||||||||||||||| ||||||  |||||||||||||||  | ||||||| || ||||||||    
T  41060046 gtggtattcaatcaagatttttattaaatataaataaatcttgtggtattcaatccagataatc 41060109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 3634278 - 3634330
Alignment:
Q  41 tattcaatcaagacttttatagaatataaataaatctcatagtattcagtcaa 93  Q
    ||||||||||||||||||||| ||||||| ||||| | || ||||||| ||||    
T  3634278 tattcaatcaagacttttataaaatataagtaaattttatggtattcaatcaa 3634330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 100
Target Start/End: Complemental strand, 9599085 - 9599025
Alignment:
Q  40 gtattcaatcaagacttttatagaatataaataaatctcatagtattcagtcaagataatc 100  Q
    |||||||||||||| ||||||| ||| |||||||||||  | ||||||| | |||||||||    
T  9599085 gtattcaatcaagaattttataaaatttaaataaatcttgttgtattcaattaagataatc 9599025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 100
Target Start/End: Complemental strand, 9826656 - 9826596
Alignment:
Q  40 gtattcaatcaagacttttatagaatataaataaatctcatagtattcagtcaagataatc 100  Q
    |||||||||||||| ||||||| ||| |||||||||||  | ||||||| | |||||||||    
T  9826656 gtattcaatcaagaattttataaaatttaaataaatcttgttgtattcaattaagataatc 9826596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 185
Target Start/End: Complemental strand, 1908 - 1759
Alignment:
Q  37 gtggtattcaatcaagacttttatagaatataaataaatctcatagtattcagtcaagataatcnnnnnnntttattca-ggcaactaaatctcattgta 135  Q
    |||||||||||| |||| ||||||  || |||||||||||| |||||||||| |||||| ||||       |||||| | |||||| ||||| ||| |||    
T  1908 gtggtattcaattaagatttttatgaaacataaataaatcttatagtattcaatcaagacaatcaaaactttttattgagggcaaccaaatcccatggta 1809  T
Q  136 ttcaatcaagatttgtaccaacttataaaatatttatcggtatttaaaaa 185  Q
    |||||| |||||||||||||||||||||||| | ||| |||||| |||||    
T  1808 ttcaattaagatttgtaccaacttataaaatgtctattggtattcaaaaa 1759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 38 - 161
Target Start/End: Complemental strand, 3858208 - 3858093
Alignment:
Q  38 tggtattcaatcaagacttttatagaatataaataaatctcatagtattcagtcaagataatcnnnnnnntttattca-ggcaactaaatctcattgtat 136  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||           |||||||| |||||| |||||| || ||||    
T  3858208 tggtattcaatcaagacttttatagaatataaataaatctcatgatattcaatcaagat---------tttttattcagggcaaccaaatcttatggtat 3858118  T
Q  137 tcaatcaagatttgtaccaacttat 161  Q
    ||||||||||| |||||||||||||    
T  3858117 tcaatcaagatatgtaccaacttat 3858093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 100
Target Start/End: Complemental strand, 18176492 - 18176429
Alignment:
Q  37 gtggtattcaatcaagacttttatagaatataaataaatctcatagtattcagtcaagataatc 100  Q
    ||||||||||||||||||||||||| || ||||||||||||||| ||||| | |||||| ||||    
T  18176492 gtggtattcaatcaagacttttataaaacataaataaatctcatggtattgaatcaagacaatc 18176429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 256
Target Start/End: Complemental strand, 18176251 - 18176176
Alignment:
Q  181 aaaaaaccttgagactttttgagacatccataacttttgttttgtctttgtctcatacactcacaatcatagcctc 256  Q
    ||||||||||||||||||||||||||| || |||||| ||||  || ||||||| ||| || | | ||||||||||    
T  18176251 aaaaaaccttgagactttttgagacattcacaactttcgtttcatccttgtctcttacccttagagtcatagcctc 18176176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 100
Target Start/End: Complemental strand, 36598490 - 36598427
Alignment:
Q  37 gtggtattcaatcaagacttttatagaatataaataaatctcatagtattcagtcaagataatc 100  Q
    |||||||| |||||||||||||||| ||| ||||||||| |  | ||||||| |||||||||||    
T  36598490 gtggtatttaatcaagacttttataaaatttaaataaatattgtggtattcaatcaagataatc 36598427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 75
Target Start/End: Original strand, 37981683 - 37981721
Alignment:
Q  37 gtggtattcaatcaagacttttatagaatataaataaat 75  Q
    ||||||||||||||| ||||||||| |||||||||||||    
T  37981683 gtggtattcaatcaaaacttttataaaatataaataaat 37981721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 2288520 - 2288560
Alignment:
Q  37 gtggtattcaatcaagacttttatagaatataaataaatct 77  Q
    ||||||||||||||||||||||||| ||| |||| ||||||    
T  2288520 gtggtattcaatcaagacttttataaaatgtaaacaaatct 2288560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 35172660 - 35172604
Alignment:
Q  39 ggtattcaatcaagacttttatagaatataaataaatctcatagtattcagtcaaga 95  Q
    |||||| ||||||||||||||| |||| |||||||||||  | ||||||| ||||||    
T  35172660 ggtattgaatcaagacttttatggaatctaaataaatcttgtggtattcaatcaaga 35172604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 41 - 165
Target Start/End: Complemental strand, 39039140 - 39039014
Alignment:
Q  41 tattcaatcaagacttt--tatagaatataaataaatctcatagtattcagtcaagataatcnnnnnnntttattca-ggcaactaaatctcattgtatt 137  Q
    |||||||||||||||||  |||||||||||||||||||| || ||||||| |||||| ||||       |||||||| |||||| ||||||| | |||||    
T  39039140 tattcaatcaagactttcttatagaatataaataaatct-atggtattcaatcaagacaatcaagattttttattcaaggcaaccaaatctcttggtatt 39039042  T
Q  138 caatcaagatttgtaccaacttataaaa 165  Q
    |||| |||||| ||||||||||||||||    
T  39039041 caattaagattcgtaccaacttataaaa 39039014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 100
Target Start/End: Original strand, 14061607 - 14061670
Alignment:
Q  37 gtggtattcaatcaagacttttatagaatataaataaatctcatagtattcagtcaagataatc 100  Q
    ||||||||||||||||| |||||||||||||||||||||||  | ||||||| |||||| ||||    
T  14061607 gtggtattcaatcaagatttttatagaatataaataaatcttgtggtattcaatcaagacaatc 14061670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 24317972 - 24318012
Alignment:
Q  37 gtggtattcaatcaagacttttatagaatataaataaatct 77  Q
    ||||||||||||||||||||||||| ||||||||| |||||    
T  24317972 gtggtattcaatcaagacttttatataatataaattaatct 24318012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 95
Target Start/End: Original strand, 43488969 - 43489025
Alignment:
Q  39 ggtattcaatcaagacttttatagaatataaataaatctcatagtattcagtcaaga 95  Q
    |||||| ||||||||||||||| |||| |||||||||||  ||||||||| ||||||    
T  43488969 ggtattgaatcaagacttttatggaatctaaataaatcttgtagtattcaatcaaga 43489025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 66 - 185
Target Start/End: Original strand, 36681985 - 36682105
Alignment:
Q  66 ataaataaatctcatagtattcagtcaagataatcnnnnnnntttattca-ggcaactaaatctcattgtattcaatcaagatttgtaccaacttataaa 164  Q
    ||||||||||||||| ||||||| |||||| ||||       |||||| | |||||| ||||||||| ||||||||||||||||||||||||| ||||||    
T  36681985 ataaataaatctcatggtattcaatcaagacaatcaagattttttatttaaggcaaccaaatctcatggtattcaatcaagatttgtaccaacctataaa 36682084  T
Q  165 atatttatcggtatttaaaaa 185  Q
    || | ||| |||||| |||||    
T  36682085 atgtctataggtattcaaaaa 36682105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 88
Target Start/End: Complemental strand, 26806599 - 26806548
Alignment:
Q  37 gtggtattcaatcaagacttttatagaatataaataaatctcatagtattca 88  Q
    ||||||||||||||||||||||||| |||||||||||||||  |||||||||    
T  26806599 gtggtattcaatcaagacttttataaaatataaataaatcttgtagtattca 26806548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 26795656 - 26795616
Alignment:
Q  37 gtggtattcaatcaagacttttatagaatataaataaatct 77  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  26795656 gtggtattcaatcaagacttttataaaatataaataaatct 26795616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 88
Target Start/End: Complemental strand, 26795535 - 26795484
Alignment:
Q  37 gtggtattcaatcaagacttttatagaatataaataaatctcatagtattca 88  Q
    ||||||||||||||| ||||||||| |||||||||||||||  |||||||||    
T  26795535 gtggtattcaatcaaaacttttataaaatataaataaatcttgtagtattca 26795484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 378294 - 378350
Alignment:
Q  37 gtggtattcaatcaagacttttatagaatataaataaatctcatagtattcagtcaa 93  Q
    |||||||||||||||||||| |||| ||| |||||||||||  ||||||||| ||||    
T  378294 gtggtattcaatcaagacttctataaaatctaaataaatcttgtagtattcaatcaa 378350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 2276228 - 2276188
Alignment:
Q  37 gtggtattcaatcaagacttttatagaatataaataaatct 77  Q
    ||||||||||||||||||||||||| ||| |||||||||||    
T  2276228 gtggtattcaatcaagacttttataaaatgtaaataaatct 2276188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 77
Target Start/End: Complemental strand, 26806716 - 26806680
Alignment:
Q  41 tattcaatcaagacttttatagaatataaataaatct 77  Q
    ||||||||||||||||||||| |||||||||||||||    
T  26806716 tattcaatcaagacttttataaaatataaataaatct 26806680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 39753496 - 39753536
Alignment:
Q  37 gtggtattcaatcaagacttttatagaatataaataaatct 77  Q
    ||||||||||||||||||||||||| |||||||| ||||||    
T  39753496 gtggtattcaatcaagacttttataaaatataaaaaaatct 39753536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 77
Target Start/End: Complemental strand, 9689357 - 9689319
Alignment:
Q  39 ggtattcaatcaagacttttatagaatataaataaatct 77  Q
    ||||||||||||||| ||||||| |||||||||||||||    
T  9689357 ggtattcaatcaagatttttataaaatataaataaatct 9689319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 28594465 - 28594425
Alignment:
Q  37 gtggtattcaatcaagacttttatagaatataaataaatct 77  Q
    ||||||||||||||||| ||||||| || ||||||||||||    
T  28594465 gtggtattcaatcaagatttttataaaacataaataaatct 28594425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 37 - 100
Target Start/End: Complemental strand, 28100605 - 28100542
Alignment:
Q  37 gtggtattcaatcaagacttttatagaatataaataaatctcatagtattcagtcaagataatc 100  Q
    ||||||||||||||||||||||||| ||||||||||||||| || ||||||| |||||| ||||    
T  28100605 gtggtattcaatcaagacttttataaaatataaataaatcttatggtattcaatcaagacaatc 28100542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 37 - 185
Target Start/End: Original strand, 44646782 - 44646922
Alignment:
Q  37 gtggtattcaatcaagacttttatagaatataaataaatctcatagtattcagtcaagataatcnnnnnnntttattc-aggcaactaaatctcattgta 135  Q
    ||||||||||||||||||||||||| || |||||||||||| || ||||||| ||||||            ||||||| || |||| ||||| ||| |||    
T  44646782 gtggtattcaatcaagacttttataaaacataaataaatcttatggtattcaatcaaga---------ctttttattcaagacaaccaaatcccatagta 44646872  T
Q  136 ttcaatcaagatttgtaccaacttataaaatatttatcggtatttaaaaa 185  Q
    |||||| ||||||||||||||||| |||||| | ||| |||||| |||||    
T  44646873 ttcaattaagatttgtaccaacttttaaaatgtctattggtattcaaaaa 44646922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 37370910 - 37370870
Alignment:
Q  37 gtggtattcaatcaagacttttatagaatataaataaatct 77  Q
    ||||||||||||||| ||||||||| |||||||||||||||    
T  37370910 gtggtattcaatcaaaacttttataaaatataaataaatct 37370870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 100
Target Start/End: Original strand, 38230833 - 38230896
Alignment:
Q  37 gtggtattcaatcaagacttttatagaatataaataaatctcatagtattcagtcaagataatc 100  Q
    ||||||||||||||||||||||||| ||| |||| ||||||  | ||||||| |||||| ||||    
T  38230833 gtggtattcaatcaagacttttataaaatttaaacaaatcttgtggtattcaatcaagacaatc 38230896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 100
Target Start/End: Original strand, 53271974 - 53272033
Alignment:
Q  41 tattcaatcaagacttttatagaatataaataaatctcatagtattcagtcaagataatc 100  Q
    ||||||||||||||||||||| ||||||||||||| |  | ||||||| |||||| ||||    
T  53271974 tattcaatcaagacttttatataatataaataaatattgtggtattcaatcaagacaatc 53272033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 1848547 - 1848510
Alignment:
Q  40 gtattcaatcaagacttttatagaatataaataaatct 77  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  1848547 gtatttaatcaagacttttataaaatataaataaatct 1848510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 181 - 256
Target Start/End: Complemental strand, 45215183 - 45215108
Alignment:
Q  181 aaaaaaccttgagactttttgagacatccataacttttgttttgtctttgtctcatacactcacaatcatagcctc 256  Q
    ||||||||||||||||||||||||||| || |||||||||||  || ||||||| ||| |||||| ||||||||||    
T  45215183 aaaaaaccttgagactttttgagacattcacaacttttgtttcatccttgtctcttaccctcacagtcatagcctc 45215108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 37 - 185
Target Start/End: Complemental strand, 45215424 - 45215275
Alignment:
Q  37 gtggtattcaatcaagacttttatagaatataaataaatctcatagtattcagtcaagataatcnnnnnnntttattc-aggcaactaaatctcattgta 135  Q
    ||||||||||||||| ||||||||| || ||||||||||||||| ||||| | |||||| ||||       ||||||| ||||||  || || ||| |||    
T  45215424 gtggtattcaatcaaaacttttataaaacataaataaatctcatggtattgaatcaagacaatcaagattttttattcaaggcaatcaattcccatggta 45215325  T
Q  136 ttcaatcaagatttgtaccaacttataaaatatttatcggtatttaaaaa 185  Q
    ||||||  || |||||| ||||||||||||| | ||| |||||| |||||    
T  45215324 ttcaattgagttttgtagcaacttataaaatgtctattggtattcaaaaa 45215275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 88
Target Start/End: Complemental strand, 10225692 - 10225641
Alignment:
Q  37 gtggtattcaatcaagacttttatagaatataaataaatctcatagtattca 88  Q
    ||||||||||||||||||||||||| |||||||||||||||  |||||||||    
T  10225692 gtggtattcaatcaagacttttataaaatataaataaatcttgtagtattca 10225641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 77
Target Start/End: Complemental strand, 44042067 - 44042028
Alignment:
Q  38 tggtattcaatcaagacttttatagaatataaataaatct 77  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  44042067 tggtattcaatcaagacttttatagaatataaataaatct 44042028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 10105037 - 10104997
Alignment:
Q  37 gtggtattcaatcaagacttttatagaatataaataaatct 77  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  10105037 gtggtattcaatcaagacttttataaaatataaataaatct 10104997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 10216184 - 10216144
Alignment:
Q  37 gtggtattcaatcaagacttttatagaatataaataaatct 77  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  10216184 gtggtattcaatcaagacttttataaaatataaataaatct 10216144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 88
Target Start/End: Complemental strand, 10104916 - 10104865
Alignment:
Q  37 gtggtattcaatcaagacttttatagaatataaataaatctcatagtattca 88  Q
    ||||||||||||||| ||||||||| |||||||||||||||  |||||||||    
T  10104916 gtggtattcaatcaaaacttttataaaatataaataaatcttgtagtattca 10104865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 100
Target Start/End: Complemental strand, 12103425 - 12103362
Alignment:
Q  37 gtggtattcaatcaagacttttatagaatataaataaatctcatagtattcagtcaagataatc 100  Q
    ||||||||||||| ||| |||||| ||||||||||||||||  ||||||||| |||||| ||||    
T  12103425 gtggtattcaatctagatttttattgaatataaataaatcttgtagtattcaatcaagacaatc 12103362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 10055804 - 10055767
Alignment:
Q  40 gtattcaatcaagacttttatagaatataaataaatct 77  Q
    |||||||||||||||||||||| |||||||||||||||    
T  10055804 gtattcaatcaagacttttataaaatataaataaatct 10055767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 10216063 - 10216023
Alignment:
Q  37 gtggtattcaatcaagacttttatagaatataaataaatct 77  Q
    ||||||||||||||| ||||||||| |||||||||||||||    
T  10216063 gtggtattcaatcaaaacttttataaaatataaataaatct 10216023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 77
Target Start/End: Complemental strand, 10225809 - 10225773
Alignment:
Q  41 tattcaatcaagacttttatagaatataaataaatct 77  Q
    ||||||||||||||||||||| |||||||||||||||    
T  10225809 tattcaatcaagacttttataaaatataaataaatct 10225773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 88
Target Start/End: Original strand, 46749312 - 46749363
Alignment:
Q  37 gtggtattcaatcaagacttttatagaatataaataaatctcatagtattca 88  Q
    |||||| | |||||||||||||||| ||||||||||||||| || |||||||    
T  46749312 gtggtaatgaatcaagacttttataaaatataaataaatcttatggtattca 46749363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 45926965 - 45926928
Alignment:
Q  40 gtattcaatcaagacttttatagaatataaataaatct 77  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  45926965 gtattcaatcaagacttctataaaatataaataaatct 45926928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 256
Target Start/End: Complemental strand, 51826618 - 51826543
Alignment:
Q  181 aaaaaaccttgagactttttgagacatccataacttttgttttgtctttgtctcatacactcacaatcatagcctc 256  Q
    ||||||||||||||||||||||||||| ||||||||||||||  || ||||||| | | |||| | ||||||||||    
T  51826618 aaaaaaccttgagactttttgagacattcataacttttgtttcatccttgtctcttgccctcagagtcatagcctc 51826543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 123 - 185
Target Start/End: Original strand, 19893588 - 19893650
Alignment:
Q  123 aaatctcattgtattcaatcaagatttgtaccaacttataaaatatttatcggtatttaaaaa 185  Q
    |||||||||  |||||||| |||||||||||||||||||||||| | ||| ||||||||||||    
T  19893588 aaatctcatgatattcaattaagatttgtaccaacttataaaatgtctattggtatttaaaaa 19893650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 76
Target Start/End: Original strand, 4288998 - 4289033
Alignment:
Q  41 tattcaatcaagacttttatagaatataaataaatc 76  Q
    ||||||||||||||||||||||||||||||||||||    
T  4288998 tattcaatcaagacttttatagaatataaataaatc 4289033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 100
Target Start/End: Original strand, 48203409 - 48203472
Alignment:
Q  37 gtggtattcaatcaagacttttatagaatataaataaatctcatagtattcagtcaagataatc 100  Q
    ||||||||||||||||||||||||| |||||||| ||||||  | ||||||| |||||| ||||    
T  48203409 gtggtattcaatcaagacttttataaaatataaacaaatcttgtggtattcaatcaagacaatc 48203472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 51826859 - 51826816
Alignment:
Q  37 gtggtattcaatcaagacttttatagaatataaataaatctcat 80  Q
    ||||||||||||||||||||||||| || |||||||||||||||    
T  51826859 gtggtattcaatcaagacttttataaaacataaataaatctcat 51826816  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 27198332 - 27198372
Alignment:
Q  37 gtggtattcaatcaagacttttatagaatataaataaatct 77  Q
    ||||||||||||||| ||||||||| |||||||||||||||    
T  27198332 gtggtattcaatcaaaacttttataaaatataaataaatct 27198372  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 100
Target Start/End: Original strand, 48194651 - 48194714
Alignment:
Q  37 gtggtattcaatcaagacttttatagaatataaataaatctcatagtattcagtcaagataatc 100  Q
    ||||||||||||||||||||||||| ||| |||| ||||||  | ||||||| |||||| ||||    
T  48194651 gtggtattcaatcaagacttttataaaatctaaacaaatcttgtggtattcaatcaagacaatc 48194714  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 95
Target Start/End: Complemental strand, 19007602 - 19007544
Alignment:
Q  37 gtggtattcaatcaagacttttatagaatataaataaatctcatagtattcagtcaaga 95  Q
    ||||||||||||||||||||||||| ||| |||| ||||||  | ||||||| ||||||    
T  19007602 gtggtattcaatcaagacttttataaaatgtaaacaaatcttgtggtattcaatcaaga 19007544  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 77
Target Start/End: Complemental strand, 52179712 - 52179674
Alignment:
Q  39 ggtattcaatcaagacttttatagaatataaataaatct 77  Q
    |||||||||| |||||||||||| |||||||||||||||    
T  52179712 ggtattcaataaagacttttataaaatataaataaatct 52179674  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 78
Target Start/End: Complemental strand, 14229074 - 14229033
Alignment:
Q  37 gtggtattcaatcaagacttttatagaatataaataaatctc 78  Q
    ||||||||||||||||||||||||| |||| ||| |||||||    
T  14229074 gtggtattcaatcaagacttttataaaatacaaagaaatctc 14229033  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 70
Target Start/End: Complemental strand, 14555334 - 14555301
Alignment:
Q  37 gtggtattcaatcaagacttttatagaatataaa 70  Q
    ||||||||||||||||||||||||| ||||||||    
T  14555334 gtggtattcaatcaagacttttataaaatataaa 14555301  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 42657740 - 42657811
Alignment:
Q  1 gattttaaaagactttttaattataannnnnnnnnngtggtattcaatcaagacttttatagaatataaataa 73  Q
    ||||||||||||||||||||||||||          ||||||||||||||||||||| ||| |||||||||||    
T  42657740 gattttaaaagactttttaattataaaaaagtctt-gtggtattcaatcaagactttcataaaatataaataa 42657811  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 19893515 - 19893563
Alignment:
Q  40 gtattcaatcaagacttttatagaatataaataaatctcatagtattca 88  Q
    ||||||||||||   ||||||||||||| |||||||||||| |||||||    
T  19893515 gtattcaatcaaattttttatagaatattaataaatctcatggtattca 19893563  T

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Target: scaffold0287 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 93
Target Start/End: Complemental strand, 11807 - 11755
Alignment:
Q  41 tattcaatcaagacttttatagaatataaataaatctcatagtattcagtcaa 93  Q
    ||||||||||||||||||||| ||||||| ||||| | || ||||||| ||||    
T  11807 tattcaatcaagacttttataaaatataagtaaattttatggtattcaatcaa 11755  T

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