View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11552_high_1 (Length: 367)
Name: NF11552_high_1
Description: NF11552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11552_high_1 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 14 - 367
Target Start/End: Original strand, 14243282 - 14243635
Alignment:
| Q |
14 |
cacagaccaaaaccctataaactaaaataatggtgatagcaatacagtgtagtagaatctgaacaaatcacattgttctgcaatatgctatttattacaa |
113 |
Q |
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| T |
14243282 |
cacagaccaaaaccctataaactaaaataatggtgatagcaatacagtgtagtagaatctgaacaaatcacattgttctgcaatatgctatttattacaa |
14243381 |
T |
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| Q |
114 |
aaagttttcaaattgcggctaaagcaacgtcatagtgacaacactgttcagtatagggtaatcaatcccagcaacctatttccataagagtgtgtttatt |
213 |
Q |
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| T |
14243382 |
aaagttttcaaattgcggctaaagcaacgtcatagtgacaacactgttcagtatagtgtaatcaatcccagcaacctatttccataagagtgtgtttatt |
14243481 |
T |
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| Q |
214 |
tcaaagttttcactcagattgcaagaaacataggcttctgaatataacattatcatgtttggtacaagcttataaggtttaatctctcgtattgtttatt |
313 |
Q |
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| T |
14243482 |
tcaaagttttcactcagattgcaagaaacataggcttctgaatataacattatcatgtttggtacaagcttataaggtttaatctctcgtattgtttatt |
14243581 |
T |
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| Q |
314 |
cccgagaataaaatttactcacaagtctcaattttacatcctcgcctaaaagaa |
367 |
Q |
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| T |
14243582 |
cccgagaataaaatttactcacaagtctcaattttacatcctcgcctaaaagaa |
14243635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 86 - 133
Target Start/End: Complemental strand, 33120603 - 33120556
Alignment:
| Q |
86 |
ttgttctgcaatatgctatttattacaaaaagttttcaaattgcggct |
133 |
Q |
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| T |
33120603 |
ttgttctgcaatatgctatttagtacaaaatgttgtcaaatagcggct |
33120556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 53855788 - 53855747
Alignment:
| Q |
85 |
attgttctgcaatatgctatttattacaaaaagttttcaaat |
126 |
Q |
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| T |
53855788 |
attgttctgcaatatgctatttagtacaaaatgttgtcaaat |
53855747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 114
Target Start/End: Complemental strand, 21451018 - 21450970
Alignment:
| Q |
67 |
agaatctgaacaaatcac-attgttctgcaatatgctatttattacaaa |
114 |
Q |
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| T |
21451018 |
agaatttgaacaaatcactattgttctggaatatgctatttagtacaaa |
21450970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 126
Target Start/End: Complemental strand, 15606384 - 15606332
Alignment:
| Q |
75 |
aacaaatcac-attgttctgcaatatgctatttattacaaaaagttttcaaat |
126 |
Q |
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| T |
15606384 |
aacaaatcactattgttctgctatatgctatttagtacaaaatgttgtcaaat |
15606332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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