View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11552_high_5 (Length: 310)
Name: NF11552_high_5
Description: NF11552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11552_high_5 |
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| [»] chr5 (10 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 14 - 310
Target Start/End: Complemental strand, 38980225 - 38979933
Alignment:
| Q |
14 |
gaacctgaacaaggaaaaaacattcagatcaagatacgcctagaaacatgataagaatcaatgggtagcttataactaaacattcatttttgtatcacat |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38980225 |
gaacctgaacaaggaaaaaacattcagatcaagatacgcctagaaacatgataagaatcaatgggtagcttttaactaaacattcatttttgtatcacat |
38980126 |
T |
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| Q |
114 |
ttgacgaaacaaattgtttttaactaaaccccaaacagaaaatacctggcgattgtgcac----atattcgaaggatgaagccaccacataaggataacg |
209 |
Q |
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| T |
38980125 |
ttgacgaaacaaattgtttttaactaaaccacaaacagaaaatacctggtgattgtgcacatatatattcgaaggatgaag---ccacataaggataacg |
38980029 |
T |
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| Q |
210 |
cttgtgcacatattccaagtatgaacgcacatcaggaaagc-gatttgtttcactttcacaatatccctagatgaatctttctgaaagcatataatatca |
308 |
Q |
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| T |
38980028 |
tttgtgcacatattccaagtataaactcacatcaggaaagcagatttg------tttcacaatatccatagatgaatctttctgaaagcatataatatca |
38979935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 14 - 310
Target Start/End: Original strand, 39910260 - 39910536
Alignment:
| Q |
14 |
gaacctgaacaaggaaaaaacattcagatcaagatacgcctagaaacatgataagaatcaatgggtagcttataactaaacattcatttttgtatcacat |
113 |
Q |
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| T |
39910260 |
gaacctgaacaaggaaaaaacattcagatcaagatacgcctagaaacatgataagaatcaatgggtagctt------------tcatttttgtatcacat |
39910347 |
T |
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| Q |
114 |
ttgacgaaacaaattgtttttaactaaaccccaaacagaaaatacctggcgattgtgcacatattcgaaggatgaagccaccacataaggataacgcttg |
213 |
Q |
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| T |
39910348 |
ttgacgaaacaaattgtttttaactaaaccacaaacagaaaatacctggcgattgtgcacatattcgaaggatgaag---ccacataaggataacgcttg |
39910444 |
T |
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| Q |
214 |
tgcacatattccaagtatgaacgcacatcaggaaa-gcgatttgtttcactttcacaatatccctagatgaatctttctgaaagcatataatatcacc |
310 |
Q |
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| T |
39910445 |
tgcacatattccaagtatgaacacacatcacgaaaggggatttg------tttcacaatatccatagatgagtctttctgaaagcatataatatcacc |
39910536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 39846946 - 39847016
Alignment:
| Q |
14 |
gaacctgaacaaggaaaaaacattcagatcaagatacgcctagaaacatgataagaatcaatgggtagctt |
84 |
Q |
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| T |
39846946 |
gaacctaaacaaggaaacaacattcagttcaagataagcctagaaacaggataagaataaatgggtagctt |
39847016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 39856755 - 39856823
Alignment:
| Q |
15 |
aacctgaacaaggaaaaaacattcagatcaagatacgcctagaaacatgataagaatcaatgggtagctt |
84 |
Q |
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| T |
39856755 |
aacctgaacaaggaaacaacattc-gttcaagataagcctagaaacatgattagaataactgggtagctt |
39856823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 39864254 - 39864294
Alignment:
| Q |
211 |
ttgtgcacatattccaagtatgaacgcacatcaggaaagcg |
251 |
Q |
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| T |
39864254 |
ttgtgcacatattccaagtatgaacgcacatcaggatagcg |
39864294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 178
Target Start/End: Complemental strand, 39737247 - 39737201
Alignment:
| Q |
132 |
tttaactaaaccccaaacagaaaatacctggcgattgtgcacatatt |
178 |
Q |
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| T |
39737247 |
tttaaataaacctcaaaaagaaaatacctggcgattgtgcacatatt |
39737201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 179
Target Start/End: Original strand, 37465353 - 37465433
Alignment:
| Q |
99 |
atttttgtatcacatttgacgaaacaaattgtttttaactaaaccccaaacagaaaatacctggcgattgtgcacatattc |
179 |
Q |
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| T |
37465353 |
atttttggatcacatcaaacgaaacaaattgcctttaattaatcctcaaaaggaaaatacctggcgattgtgcacgtattc |
37465433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 246
Target Start/End: Original strand, 39897637 - 39897672
Alignment:
| Q |
211 |
ttgtgcacatattccaagtatgaacgcacatcagga |
246 |
Q |
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| T |
39897637 |
ttgtgcacatattccaagtatgaaggcacatcagga |
39897672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 190
Target Start/End: Original strand, 39897571 - 39897661
Alignment:
| Q |
100 |
tttttgtatcacatttgacgaaacaaattgtttttaactaaaccccaaacagaaaatacctggcgattgtgcacatattcgaaggatgaag |
190 |
Q |
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| T |
39897571 |
tttttgaatcacattagactaaacaaattgacttcaattaaaccgcaaaaggaaaataccagggtattgtgcacatattccaagtatgaag |
39897661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 189
Target Start/End: Original strand, 39864185 - 39864277
Alignment:
| Q |
96 |
ttcatttttgtatcacatttgacgaaacaaattgtttttaactaaaccccaaacagaaaatacctggcgattgtgcacatattcgaaggatgaa |
189 |
Q |
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| T |
39864185 |
ttcatttttgcatcacatc-gactaaactaattgcctttaattaaacatcaaaaaggaaatacctggagattgtgcacatattccaagtatgaa |
39864277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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