View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11552_high_7 (Length: 285)

Name: NF11552_high_7
Description: NF11552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11552_high_7
NF11552_high_7
[»] chr6 (3 HSPs)
chr6 (86-190)||(14244029-14244133)
chr6 (11-91)||(14243921-14244001)
chr6 (108-148)||(34625729-34625769)
[»] chr8 (2 HSPs)
chr8 (108-151)||(2517099-2517142)
chr8 (108-149)||(32691737-32691778)
[»] chr4 (1 HSPs)
chr4 (108-148)||(26369454-26369494)
[»] chr5 (1 HSPs)
chr5 (108-145)||(31676863-31676900)
[»] chr1 (1 HSPs)
chr1 (108-149)||(29230059-29230100)
[»] chr7 (1 HSPs)
chr7 (108-148)||(13859516-13859556)


Alignment Details
Target: chr6 (Bit Score: 101; Significance: 4e-50; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 86 - 190
Target Start/End: Original strand, 14244029 - 14244133
Alignment:
Q  86 atcaaatgcaatttaattagagtcaattaattcattttctcaaattactaccggtgtcaatgtcagactcagtgtcatgtccggtatccgtgtcaatgtt 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  14244029 atcaaatgcaatttaattagagtcaattaattcattttctcaaattactaccggtgtcgatgtcagactcagtgtcatgtccggtatccgtgtcaatgtt 14244128  T
Q  186 tcatt 190  Q
    |||||    
T  14244129 tcatt 14244133  T

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Target: chr6; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 11 - 91
Target Start/End: Original strand, 14243921 - 14244001
Alignment:
Q  11 tgaaacaaacatcatctaaaccttttgctttttgtaaaatacaaacaaataacttcatatcaccaaacacttttaatcaaa 91  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14243921 tgaaacaaacatcatctaaaccttttgttttttgtaaaatacaaacaaataacttcatatcaccaaacacttttaatcaaa 14244001  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 148
Target Start/End: Complemental strand, 34625769 - 34625729
Alignment:
Q  108 tcaattaattcattttctcaaattactaccggtgtcaatgt 148  Q
    ||||||||||||||||||||||||| || ||||||| ||||    
T  34625769 tcaattaattcattttctcaaattattatcggtgtcgatgt 34625729  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 151
Target Start/End: Complemental strand, 2517142 - 2517099
Alignment:
Q  108 tcaattaattcattttctcaaattactaccggtgtcaatgtcag 151  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||    
T  2517142 tcaattaattcattttctcaaattattaccggtgtcattgtcag 2517099  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 149
Target Start/End: Complemental strand, 32691778 - 32691737
Alignment:
Q  108 tcaattaattcattttctcaaattactaccggtgtcaatgtc 149  Q
    |||||||  ||||||||| |||||||||||||||||||||||    
T  32691778 tcaattatgtcattttcttaaattactaccggtgtcaatgtc 32691737  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 148
Target Start/End: Original strand, 26369454 - 26369494
Alignment:
Q  108 tcaattaattcattttctcaaattactaccggtgtcaatgt 148  Q
    |||| |||||||||||||||||||||||||| |||||||||    
T  26369454 tcaaataattcattttctcaaattactaccgatgtcaatgt 26369494  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 145
Target Start/End: Original strand, 31676863 - 31676900
Alignment:
Q  108 tcaattaattcattttctcaaattactaccggtgtcaa 145  Q
    |||||||  |||||||||||||||||||||||||||||    
T  31676863 tcaattatgtcattttctcaaattactaccggtgtcaa 31676900  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 149
Target Start/End: Complemental strand, 29230100 - 29230059
Alignment:
Q  108 tcaattaattcattttctcaaattactaccggtgtcaatgtc 149  Q
    |||||||  |||||||||||||||| ||||||||||||||||    
T  29230100 tcaattatgtcattttctcaaattattaccggtgtcaatgtc 29230059  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 148
Target Start/End: Complemental strand, 13859556 - 13859516
Alignment:
Q  108 tcaattaattcattttctcaaattactaccggtgtcaatgt 148  Q
    ||||||||||||||||||||||||| |||  ||||||||||    
T  13859556 tcaattaattcattttctcaaattattactagtgtcaatgt 13859516  T

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