View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11552_low_3 (Length: 333)
Name: NF11552_low_3
Description: NF11552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11552_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 20 - 320
Target Start/End: Original strand, 36682757 - 36683054
Alignment:
| Q |
20 |
acatggactttaacatcaagtacagatggtggaggcatgggaatgtcctgcacctgactgtacaagtggtggtaaccttcccttgaccgcacataattca |
119 |
Q |
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| T |
36682757 |
acatggactttaacatcaagtacagatggtggaggcctgggaatgtcctgcacctgactgtacaagtggtggtaaccttcccttgactgcacataattca |
36682856 |
T |
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| Q |
120 |
tcatccctagtactagcatatctcctcctataaggtcatggtctcccgatgatcatcatacaaactgaatatgatatttagtagcctcagacaaataaat |
219 |
Q |
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| T |
36682857 |
t---ccctagtactagcatatctcctcctataaggtcatggtctcccgatgatcatcatacaaactgaatatgatatttagtagcctcagacaaataaat |
36682953 |
T |
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| Q |
220 |
gatatagataatttaatttcgtaccaccccatgaccgtccatgaactgtgtcgaggtcctgtggtggctcaaaaaatattacctctatgtgcttgttgtt |
319 |
Q |
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| T |
36682954 |
gatatagataatttaatttcgtatcaccccatgaccgtccatgaactgtgtcgaggtcctgtggtggctcaaaaaatattacctctatgtgcttgttgtt |
36683053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 36693724 - 36693787
Alignment:
| Q |
20 |
acatggactttaacatcaagtacagatggtggaggcatgggaatgtcctgcacctgactgtaca |
83 |
Q |
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| T |
36693724 |
acatggactttaacatcaagtacagatggtggaggcctgggaatgtcctgcacctgactgtaca |
36693787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 185 - 320
Target Start/End: Original strand, 436085 - 436218
Alignment:
| Q |
185 |
tgaatatgatatttagtagcctcagacaaataaatgatatagataatttaatttcgtaccaccccatgaccgtccatgaactgtgtcgaggtcctgtggt |
284 |
Q |
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| T |
436085 |
tgaatatgatatttagtagcctcagataaataa-tgatatagataatttaatttcgtaccaccccatgaccgtccatgaactgtgtcgaggtcc-atggt |
436182 |
T |
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| Q |
285 |
ggctcaaaaaatattacctctatgtgcttgttgttc |
320 |
Q |
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| T |
436183 |
ggctcaaaaaatattacctctatgtgcttgttgttc |
436218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 435967 - 436029
Alignment:
| Q |
20 |
acatggactttaacatcaagtacagatggtggaggcatgggaatgtcctgcacctgactgtac |
82 |
Q |
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| T |
435967 |
acatggactttaacatcaagtacagatggtggaggcctgggaatgtcctgcacctgactgtac |
436029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 81 - 117
Target Start/End: Original strand, 436049 - 436085
Alignment:
| Q |
81 |
acaagtggtggtaaccttcccttgaccgcacataatt |
117 |
Q |
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| T |
436049 |
acaagtggtggtaaccttcccttgaccgcacataatt |
436085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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