View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11552_low_4 (Length: 313)
Name: NF11552_low_4
Description: NF11552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11552_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 8533720 - 8534015
Alignment:
| Q |
1 |
atatatatcacttggggatccttaattcaaactcaaataaatgcgtccaactgggagcagattctctcatgtaatttgagagttcaatgaaatctaagcc |
100 |
Q |
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| T |
8533720 |
atatatatcactgggggatccttaattcaaactcaaatgaatgcgtccaactgggagcagattctctcatgtaacttgagagttcaatgagatctaagcc |
8533819 |
T |
|
| Q |
101 |
atttattttccactactccgtgcagggccctcaacattgaagtaattgaatgatattaatgttcactggagtctctccattgaaaatttcaccgaaaggg |
200 |
Q |
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| T |
8533820 |
atttattttccactactccgtgcggagccttcaacattgaagtaattgaatggtattaatgttcactacactctctccattgaaaattttaccgaaagag |
8533919 |
T |
|
| Q |
201 |
atctacacccgtgtccaactaccaatatcatcatttgtcagctgagttaaaccagattaagaattaagttagttatataagttgactagaccatat |
296 |
Q |
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| T |
8533920 |
atctacactcgtgtccaactaccaatatcatcatttgtcagctgagttaaaccagattaagaattaagttagttatataagttgactacaccatat |
8534015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 94 - 209
Target Start/End: Original strand, 34639606 - 34639721
Alignment:
| Q |
94 |
ctaagccatttattttccactactccgtgcagggccctcaacattgaagtaattgaatgatattaatgttcactggagtctctccattgaaaatttcacc |
193 |
Q |
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| T |
34639606 |
ctaagccatttatttttcactactccatgtagggcccacaacattgatgtaattgaatggtattcatgatcactacacactctccattggaaatttcacc |
34639705 |
T |
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| Q |
194 |
gaaagggatctacacc |
209 |
Q |
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| T |
34639706 |
ggaggggatctgcacc |
34639721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 59 - 192
Target Start/End: Complemental strand, 31228541 - 31228408
Alignment:
| Q |
59 |
agattctctcatgtaatttgagagttcaatgaaatctaagccatttattttccactactccgtgcagggccctcaacattgaagtaattgaatgatatta |
158 |
Q |
| |
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|||||||||| ||| ||| |||||| || ||| ||||||||||||||||||| |||||||| || | ||||||||| |||||||||||||||| |||| |
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| T |
31228541 |
agattctctcttgtgattggagagtccagtgagatctaagccatttattttctactactccatgtggagccctcaacgttgaagtaattgaatggtattg |
31228442 |
T |
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| Q |
159 |
atgttcactggagtctctccattgaaaatttcac |
192 |
Q |
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| T |
31228441 |
atgtccaccgcactctctccattgaaaatttcac |
31228408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 152
Target Start/End: Original strand, 23861990 - 23862089
Alignment:
| Q |
52 |
tgggagcagattctctcatgtaatttgagagttcaatgaaatctaagccatttattttccactactccgtgcagggccctcaacattgaagtaattgaat |
151 |
Q |
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| T |
23861990 |
tgggagctgattctctcctgtgatcggagagtccaatgagatctaagccatttattttctactactccatg-tgggccttcaatattgaagtaattgaat |
23862088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 78 - 192
Target Start/End: Complemental strand, 7256841 - 7256727
Alignment:
| Q |
78 |
gagagttcaatgaaatctaagccatttattttccactactccgtgcagggccctcaacattgaagtaattgaatgatattaatgttcactggagtctctc |
177 |
Q |
| |
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|||||| || ||| |||||||||||||||||||||||||| | || |||||||||||||||||||||||||| ||| |||| ||||| | |||||| |
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| T |
7256841 |
gagagtccagtgagatctaagccatttattttccactacttcatgggatgccctcaacattgaagtaattgaatggtatagatgtccactgcactctctc |
7256742 |
T |
|
| Q |
178 |
cattgaaaatttcac |
192 |
Q |
| |
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| T |
7256741 |
cattgaaaatttcac |
7256727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 61 - 212
Target Start/End: Complemental strand, 12257126 - 12256975
Alignment:
| Q |
61 |
attctctcatgtaatttgagagttcaatgaaatctaagccatttattttccactactccgtgcagggccctcaacattgaagtaattgaatgatattaat |
160 |
Q |
| |
|
|||||||||||| ||| |||| |||||| |||||| ||||||||||| ||||| | | | | | ||||||| ||||||||||||||| | |||| || |
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| T |
12257126 |
attctctcatgtgattggagaagccaatgagatctaaaccatttatttttcactatttcatacggagccctcactattgaagtaattgaaaggtattgat |
12257027 |
T |
|
| Q |
161 |
gttcactggagtctctccattgaaaatttcaccgaaagggatctacacccgt |
212 |
Q |
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| T |
12257026 |
gtccagtgcactttctccattgaaaatttcaccggaggggatctgcacccgt |
12256975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 54 - 165
Target Start/End: Complemental strand, 34313236 - 34313126
Alignment:
| Q |
54 |
ggagcagattctctcatgtaatttgagagttcaatgaaatctaagccatttattttccactactccgtgcagggccctcaacattgaagtaattgaatga |
153 |
Q |
| |
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|||||||||||||| | ||||| ||||| |||| ||||||||| ||||||||||||| ||||| ||||||| ||||||| ||||| |||||||||| |
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| T |
34313236 |
ggagcagattctcttctataattgaagagtccaataaaatctaagtcatttattttccatcactccatgcaggg-cctcaacgttgaactaattgaatgg |
34313138 |
T |
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| Q |
154 |
tattaatgttca |
165 |
Q |
| |
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|| ||||||||| |
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|
| T |
34313137 |
tactaatgttca |
34313126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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