View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11552_low_5 (Length: 310)

Name: NF11552_low_5
Description: NF11552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11552_low_5
NF11552_low_5
[»] chr5 (10 HSPs)
chr5 (14-310)||(38979933-38980225)
chr5 (14-310)||(39910260-39910536)
chr5 (14-84)||(39846946-39847016)
chr5 (15-84)||(39856755-39856823)
chr5 (211-251)||(39864254-39864294)
chr5 (132-178)||(39737201-39737247)
chr5 (99-179)||(37465353-37465433)
chr5 (211-246)||(39897637-39897672)
chr5 (100-190)||(39897571-39897661)
chr5 (96-189)||(39864185-39864277)


Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 14 - 310
Target Start/End: Complemental strand, 38980225 - 38979933
Alignment:
Q  14 gaacctgaacaaggaaaaaacattcagatcaagatacgcctagaaacatgataagaatcaatgggtagcttataactaaacattcatttttgtatcacat 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  38980225 gaacctgaacaaggaaaaaacattcagatcaagatacgcctagaaacatgataagaatcaatgggtagcttttaactaaacattcatttttgtatcacat 38980126  T
Q  114 ttgacgaaacaaattgtttttaactaaaccccaaacagaaaatacctggcgattgtgcac----atattcgaaggatgaagccaccacataaggataacg 209  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    |||||||||||||||||   ||||||||||||||||    
T  38980125 ttgacgaaacaaattgtttttaactaaaccacaaacagaaaatacctggtgattgtgcacatatatattcgaaggatgaag---ccacataaggataacg 38980029  T
Q  210 cttgtgcacatattccaagtatgaacgcacatcaggaaagc-gatttgtttcactttcacaatatccctagatgaatctttctgaaagcatataatatca 308  Q
     ||||||||||||||||||||| ||| |||||||||||||| ||||||      ||||||||||||| ||||||||||||||||||||||||||||||||    
T  38980028 tttgtgcacatattccaagtataaactcacatcaggaaagcagatttg------tttcacaatatccatagatgaatctttctgaaagcatataatatca 38979935  T

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Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 14 - 310
Target Start/End: Original strand, 39910260 - 39910536
Alignment:
Q  14 gaacctgaacaaggaaaaaacattcagatcaagatacgcctagaaacatgataagaatcaatgggtagcttataactaaacattcatttttgtatcacat 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||    
T  39910260 gaacctgaacaaggaaaaaacattcagatcaagatacgcctagaaacatgataagaatcaatgggtagctt------------tcatttttgtatcacat 39910347  T
Q  114 ttgacgaaacaaattgtttttaactaaaccccaaacagaaaatacctggcgattgtgcacatattcgaaggatgaagccaccacataaggataacgcttg 213  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  39910348 ttgacgaaacaaattgtttttaactaaaccacaaacagaaaatacctggcgattgtgcacatattcgaaggatgaag---ccacataaggataacgcttg 39910444  T
Q  214 tgcacatattccaagtatgaacgcacatcaggaaa-gcgatttgtttcactttcacaatatccctagatgaatctttctgaaagcatataatatcacc 310  Q
    |||||||||||||||||||||| ||||||| |||| | ||||||      ||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  39910445 tgcacatattccaagtatgaacacacatcacgaaaggggatttg------tttcacaatatccatagatgagtctttctgaaagcatataatatcacc 39910536  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 39846946 - 39847016
Alignment:
Q  14 gaacctgaacaaggaaaaaacattcagatcaagatacgcctagaaacatgataagaatcaatgggtagctt 84  Q
    |||||| |||||||||| ||||||||| |||||||| ||||||||||| ||||||||| ||||||||||||    
T  39846946 gaacctaaacaaggaaacaacattcagttcaagataagcctagaaacaggataagaataaatgggtagctt 39847016  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 39856755 - 39856823
Alignment:
Q  15 aacctgaacaaggaaaaaacattcagatcaagatacgcctagaaacatgataagaatcaatgggtagctt 84  Q
    |||||||||||||||| ||||||| | |||||||| ||||||||||||||| ||||| | ||||||||||    
T  39856755 aacctgaacaaggaaacaacattc-gttcaagataagcctagaaacatgattagaataactgggtagctt 39856823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 39864254 - 39864294
Alignment:
Q  211 ttgtgcacatattccaagtatgaacgcacatcaggaaagcg 251  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  39864254 ttgtgcacatattccaagtatgaacgcacatcaggatagcg 39864294  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 178
Target Start/End: Complemental strand, 39737247 - 39737201
Alignment:
Q  132 tttaactaaaccccaaacagaaaatacctggcgattgtgcacatatt 178  Q
    ||||| |||||| |||| |||||||||||||||||||||||||||||    
T  39737247 tttaaataaacctcaaaaagaaaatacctggcgattgtgcacatatt 39737201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 179
Target Start/End: Original strand, 37465353 - 37465433
Alignment:
Q  99 atttttgtatcacatttgacgaaacaaattgtttttaactaaaccccaaacagaaaatacctggcgattgtgcacatattc 179  Q
    ||||||| |||||||   |||||||||||||  ||||| ||| || ||||  ||||||||||||||||||||||| |||||    
T  37465353 atttttggatcacatcaaacgaaacaaattgcctttaattaatcctcaaaaggaaaatacctggcgattgtgcacgtattc 37465433  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 246
Target Start/End: Original strand, 39897637 - 39897672
Alignment:
Q  211 ttgtgcacatattccaagtatgaacgcacatcagga 246  Q
    |||||||||||||||||||||||| |||||||||||    
T  39897637 ttgtgcacatattccaagtatgaaggcacatcagga 39897672  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 190
Target Start/End: Original strand, 39897571 - 39897661
Alignment:
Q  100 tttttgtatcacatttgacgaaacaaattgtttttaactaaaccccaaacagaaaatacctggcgattgtgcacatattcgaaggatgaag 190  Q
    |||||| |||||||| ||| ||||||||||  || || |||||| ||||  ||||||||| ||  ||||||||||||||| ||| ||||||    
T  39897571 tttttgaatcacattagactaaacaaattgacttcaattaaaccgcaaaaggaaaataccagggtattgtgcacatattccaagtatgaag 39897661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 189
Target Start/End: Original strand, 39864185 - 39864277
Alignment:
Q  96 ttcatttttgtatcacatttgacgaaacaaattgtttttaactaaaccccaaacagaaaatacctggcgattgtgcacatattcgaaggatgaa 189  Q
    |||||||||| |||||||  ||| |||| |||||  ||||| |||||  |||| || |||||||||| |||||||||||||||| ||| |||||    
T  39864185 ttcatttttgcatcacatc-gactaaactaattgcctttaattaaacatcaaaaaggaaatacctggagattgtgcacatattccaagtatgaa 39864277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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