View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11552_low_9 (Length: 244)
Name: NF11552_low_9
Description: NF11552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11552_low_9 |
 | |
|
| [»] chr5 (4 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 24 - 244
Target Start/End: Complemental strand, 39910868 - 39910648
Alignment:
| Q |
24 |
gaagcgataagctttgttattaagttcgggtcaagcagtcatgatttcagttgtttagtaacgaaacttgttcgttattaagttctattaaaatttatca |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||| |
|
|
| T |
39910868 |
gaagcgataagctttgttattaagttcgggtcaagcagtcatgatttcagttgtttagtaacgaaatttgctcattattaagttctattaaaatttatca |
39910769 |
T |
|
| Q |
124 |
ttctttcatgacataccagaagggaaaggacattttctaatggcgttactgagttaattgtgcctattgtattgcaggaagtgtttgaaccaaatgtcaa |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
39910768 |
ttctttcatgacataccagaagggaaaggacattttctaatggcgttactgagttaattgtgcccattgtattgcaggaagtgtttgaaccaaatgtcaa |
39910669 |
T |
|
| Q |
224 |
gtatctgcctgttgacatgaa |
244 |
Q |
| |
|
|| |||||||||||||||||| |
|
|
| T |
39910668 |
gtgtctgcctgttgacatgaa |
39910648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 73 - 244
Target Start/End: Original strand, 38979650 - 38979821
Alignment:
| Q |
73 |
gttgtttagtaacgaaacttgttcgttattaagttctattaaaatttatcattctttcatgacataccagaagggaaaggacattttctaatggcgttac |
172 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38979650 |
gttgtttagtaacgaaacttgttcgttattaagttctataaaaatttatcattcttgtatgacataccagaagggaaaggacattttctaatggcgttac |
38979749 |
T |
|
| Q |
173 |
tgagttaattgtgcctattgtattgcaggaagtgtttgaaccaaatgtcaagtatctgcctgttgacatgaa |
244 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
38979750 |
tgagttaattgtgcctgttgtattgcaggaagtgtttgaaccaaatgtcaagtgtctgcctgttgacatgaa |
38979821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 85
Target Start/End: Original strand, 39736720 - 39736770
Alignment:
| Q |
35 |
ctttgttattaagttcgggtcaagcagtcatgatttcagttgtttagtaac |
85 |
Q |
| |
|
|||||||||| ||| |||||||||||||||| ||||||||||| |||||| |
|
|
| T |
39736720 |
ctttgttattttgtttgggtcaagcagtcatggtttcagttgttcagtaac |
39736770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 39898085 - 39898025
Alignment:
| Q |
25 |
aagcgataagctttgttattaagttcgggtcaagcagtcatgatttcagttgtttagtaac |
85 |
Q |
| |
|
|||| ||| |||| ||||||||| ||||||||| ||||||| ||||||||||| |||||| |
|
|
| T |
39898085 |
aagccatatgcttcgttattaagcacgggtcaagtagtcatggtttcagttgttcagtaac |
39898025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University