View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11553_high_1 (Length: 724)

Name: NF11553_high_1
Description: NF11553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11553_high_1
NF11553_high_1
[»] chr7 (14 HSPs)
chr7 (112-396)||(31281364-31281649)
chr7 (420-716)||(31281671-31281967)
chr7 (19-65)||(31281316-31281362)
chr7 (523-577)||(8615021-8615075)
chr7 (528-580)||(8683065-8683117)
chr7 (520-576)||(24991780-24991836)
chr7 (526-581)||(25888894-25888949)
chr7 (526-580)||(39801701-39801755)
chr7 (503-545)||(42219376-42219418)
chr7 (516-557)||(3584222-3584263)
chr7 (516-577)||(18714446-18714507)
chr7 (539-580)||(37251199-37251240)
chr7 (516-577)||(42043068-42043129)
chr7 (526-575)||(46987086-46987135)
[»] chr3 (15 HSPs)
chr3 (503-574)||(20079723-20079794)
chr3 (503-575)||(47377338-47377410)
chr3 (535-581)||(22843458-22843504)
chr3 (526-575)||(8113574-8113623)
chr3 (503-580)||(18870714-18870791)
chr3 (503-580)||(45431943-45432020)
chr3 (505-580)||(5349523-5349598)
chr3 (517-572)||(40575612-40575667)
chr3 (518-552)||(12746361-12746395)
chr3 (526-580)||(33633330-33633384)
chr3 (531-580)||(1149086-1149135)
chr3 (516-581)||(5428438-5428503)
chr3 (531-580)||(16980371-16980420)
chr3 (516-580)||(24120422-24120487)
chr3 (531-580)||(53996294-53996343)
[»] chr8 (13 HSPs)
chr8 (503-581)||(17704007-17704085)
chr8 (516-552)||(24696008-24696044)
chr8 (526-580)||(13286126-13286180)
chr8 (526-574)||(15438454-15438502)
chr8 (526-574)||(15529758-15529806)
chr8 (531-570)||(11603854-11603893)
chr8 (503-552)||(18147479-18147528)
chr8 (526-575)||(19778065-19778114)
chr8 (503-552)||(21589190-21589239)
chr8 (531-576)||(30623292-30623337)
chr8 (503-552)||(33743598-33743647)
chr8 (531-580)||(37015853-37015902)
chr8 (516-557)||(42208471-42208512)
[»] chr6 (12 HSPs)
chr6 (507-552)||(2692238-2692283)
chr6 (516-560)||(3808120-3808164)
chr6 (516-552)||(6864135-6864171)
chr6 (528-580)||(7083006-7083058)
chr6 (516-556)||(8809325-8809365)
chr6 (526-580)||(655761-655815)
chr6 (504-553)||(1918448-1918497)
chr6 (526-575)||(4450262-4450311)
chr6 (516-553)||(8130461-8130498)
chr6 (531-580)||(8810635-8810684)
chr6 (503-580)||(9923235-9923312)
chr6 (516-557)||(31971547-31971588)
[»] chr4 (18 HSPs)
chr4 (503-580)||(7230275-7230352)
chr4 (526-580)||(19854560-19854614)
chr4 (516-574)||(37921747-37921805)
chr4 (526-575)||(7922262-7922311)
chr4 (503-580)||(50362128-50362205)
chr4 (503-575)||(54500569-54500641)
chr4 (521-580)||(36203231-36203290)
chr4 (514-545)||(42594572-42594603)
chr4 (503-570)||(56551581-56551648)
chr4 (526-580)||(10303523-10303577)
chr4 (516-574)||(11286783-11286841)
chr4 (531-581)||(31780739-31780789)
chr4 (516-586)||(37193238-37193308)
chr4 (531-580)||(6087742-6087791)
chr4 (531-560)||(6520086-6520115)
chr4 (503-580)||(12322668-12322745)
chr4 (503-556)||(16733508-16733561)
chr4 (531-580)||(34247435-34247484)
[»] chr1 (10 HSPs)
chr1 (503-580)||(1794591-1794668)
chr1 (517-580)||(34632164-34632227)
chr1 (503-557)||(46707890-46707944)
chr1 (503-574)||(15854077-15854148)
chr1 (525-580)||(28032279-28032334)
chr1 (526-580)||(52441523-52441577)
chr1 (526-575)||(9639829-9639878)
chr1 (504-577)||(34521180-34521253)
chr1 (526-575)||(38448878-38448927)
chr1 (516-549)||(49868037-49868070)
[»] chr5 (16 HSPs)
chr5 (503-568)||(23218967-23219032)
chr5 (503-556)||(31305875-31305928)
chr5 (528-580)||(1642329-1642381)
chr5 (516-560)||(18557869-18557913)
chr5 (517-577)||(20927637-20927697)
chr5 (503-575)||(37614416-37614488)
chr5 (525-576)||(9123856-9123907)
chr5 (531-574)||(13409429-13409472)
chr5 (516-582)||(16701583-16701649)
chr5 (526-580)||(18331702-18331756)
chr5 (503-552)||(3389185-3389234)
chr5 (503-580)||(5485181-5485258)
chr5 (531-580)||(18489093-18489142)
chr5 (531-580)||(30893928-30893977)
chr5 (531-580)||(36321511-36321560)
chr5 (503-580)||(37932325-37932402)
[»] chr2 (17 HSPs)
chr2 (503-552)||(36359337-36359386)
chr2 (524-580)||(7206120-7206176)
chr2 (503-551)||(32204568-32204616)
chr2 (529-576)||(14944161-14944208)
chr2 (531-578)||(20120738-20120785)
chr2 (526-576)||(4056789-4056839)
chr2 (503-577)||(13000683-13000757)
chr2 (516-557)||(4138009-4138050)
chr2 (535-580)||(4238754-4238799)
chr2 (526-575)||(24593376-24593425)
chr2 (526-575)||(28771582-28771631)
chr2 (503-552)||(30045476-30045525)
chr2 (503-552)||(30050639-30050688)
chr2 (503-552)||(30141683-30141732)
chr2 (529-582)||(30762510-30762563)
chr2 (526-575)||(39068720-39068769)
chr2 (503-552)||(43004671-43004720)
[»] scaffold0712 (1 HSPs)
scaffold0712 (512-556)||(7234-7278)
[»] scaffold0709 (1 HSPs)
scaffold0709 (512-556)||(7252-7296)
[»] scaffold1619 (1 HSPs)
scaffold1619 (516-553)||(1053-1090)
[»] scaffold0896 (1 HSPs)
scaffold0896 (531-580)||(3136-3185)


Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-131; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 112 - 396
Target Start/End: Original strand, 31281364 - 31281649
Alignment:
Q  112 tgttaagtaatttgctgtttattactttattcttttaccttttgggatctaaagtcaaaattgcatgcagttgtacaaacaatgtatttctcaaatcgcc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31281364 tgttaagtaatttgctgtttattactttattcttttaccttttgggatctaaagtcaaaattgcatgcagttgtacaaacaatgtatttctcaaatcgcc 31281463  T
Q  212 cgattaagataagacgggtcaaattt-aaaaagtaaaactacattttggacgttctattttaatcggactaacaaaaatgtgtgcattgaagaactacat 310  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||| ||||||||||||||    
T  31281464 cgattaagataagacgggtcaaatttaaaaaagtaaaactacattttggacgttctatcttaatcgaacgaacaaaaatgtgtgcgttgaagaactacat 31281563  T
Q  311 gcagttttaaatgcattcaatccacatcctatcttttgtgacattagcagtggaataaaaaattttaaatttattcttaattgtga 396  Q
     |||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||| || |||||||||||||||||||||    
T  31281564 acagttttaaatgcattcaattcacatcctatcttttgtgacattagcagtataataaaaatttctaaatttattcttaattgtga 31281649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 420 - 716
Target Start/End: Original strand, 31281671 - 31281967
Alignment:
Q  420 gctagacttgcgttacgagattaacccatctcctggatttacttacgtaaaaggtaaagtagacgcacaaaatannnnnnnnatgtggtggccaatgttt 519  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |         ||||||| ||||| ||||    
T  31281671 gctagacttgcgttacgagattaacccatctcttgaatttacttacgtaaaaggtaaagtagacgcacaaatttttttttttatgtggtcgccaaggttt 31281770  T
Q  520 gaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctcacaaggatccacaaaatattttaacgcagctaaagaagggtggtaa 619  Q
    ||||| | || ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  31281771 gaatcccagaccttgcatatattatgcattgtttttaccaagagagctaagctcacaaggatccacaaaatattttaacgcaactaaagaagggtggtaa 31281870  T
Q  620 acatgctacaattgaatggattagttatggttttcaagagttgatcaaaaccaatttcaaggtcaagcaataggctataacagtaactattcatctc 716  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31281871 acatgctacaattgaatggattagttatggttttcaagagttgatcaaaaccaatttcaaggtcaagcaataggctataacaataactattcatctc 31281967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 31281316 - 31281362
Alignment:
Q  19 aaaggcagtgctgatatattactatttagtgttcgaccatgcttaaa 65  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||    
T  31281316 aaaggaagtgctgatatattactatttagtgttcgaccatgcttaaa 31281362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 523 - 577
Target Start/End: Complemental strand, 8615075 - 8615021
Alignment:
Q  523 tctcggatcttgcatatattatgcattgtctttactaagagagctaagctcacaa 577  Q
    ||||||| |||||||||||||||||||||| |||| ||  |||||||||||||||    
T  8615075 tctcggaccttgcatatattatgcattgtccttaccaactgagctaagctcacaa 8615021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 528 - 580
Target Start/End: Complemental strand, 8683117 - 8683065
Alignment:
Q  528 gatcttgcatatattatgcattgtctttactaagagagctaagctcacaagga 580  Q
    |||||||||||||||||||||||||| ||| ||  ||||||||||||| ||||    
T  8683117 gatcttgcatatattatgcattgtctataccaactgagctaagctcacgagga 8683065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 520 - 576
Target Start/End: Complemental strand, 24991836 - 24991780
Alignment:
Q  520 gaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctcaca 576  Q
    ||||| || |||||||||||||||||||||||| |||| ||  ||||||||||||||    
T  24991836 gaatcccgtatcttgcatatattatgcattgtccttaccaactgagctaagctcaca 24991780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 526 - 581
Target Start/End: Complemental strand, 25888949 - 25888894
Alignment:
Q  526 cggatcttgcatatattatgcattgtctttactaagagagctaagctcacaaggat 581  Q
    |||| |||||||||||||||||| ||| |||| ||  |||||||||||||||||||    
T  25888949 cggaccttgcatatattatgcatcgtccttaccaactgagctaagctcacaaggat 25888894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 526 - 580
Target Start/End: Complemental strand, 39801755 - 39801701
Alignment:
Q  526 cggatcttgcatatattatgcattgtctttactaagagagctaagctcacaagga 580  Q
    |||||||||||||||||||||||||||  ||| ||  ||||||||||||| ||||    
T  39801755 cggatcttgcatatattatgcattgtccataccaactgagctaagctcacgagga 39801701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 503 - 545
Target Start/End: Original strand, 42219376 - 42219418
Alignment:
Q  503 tgtggtggccaatgtttgaatctcggatcttgcatatattatg 545  Q
    |||||||||| ||||||||| |||||| |||||||||||||||    
T  42219376 tgtggtggccgatgtttgaacctcggaccttgcatatattatg 42219418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 516 - 557
Target Start/End: Complemental strand, 3584263 - 3584222
Alignment:
Q  516 gtttgaatctcggatcttgcatatattatgcattgtctttac 557  Q
    |||||||||||| | |||||||||||||||||||||| ||||    
T  3584263 gtttgaatctcgtaccttgcatatattatgcattgtccttac 3584222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 516 - 577
Target Start/End: Complemental strand, 18714507 - 18714446
Alignment:
Q  516 gtttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctcacaa 577  Q
    ||||||| | |||| |||||||||||||||||||||| |||| ||  |||||||||| ||||    
T  18714507 gtttgaaccccggaccttgcatatattatgcattgtccttaccaactgagctaagctgacaa 18714446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 539 - 580
Target Start/End: Complemental strand, 37251240 - 37251199
Alignment:
Q  539 tattatgcattgtctttactaagagagctaagctcacaagga 580  Q
    ||||||||||||| ||||||||| ||||||||||||| ||||    
T  37251240 tattatgcattgtgtttactaagtgagctaagctcacgagga 37251199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 516 - 577
Target Start/End: Original strand, 42043068 - 42043129
Alignment:
Q  516 gtttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctcacaa 577  Q
    |||||||||||||| |||  |||||||||||||||||  ||| ||  |||||||||||||||    
T  42043068 gtttgaatctcggaccttaaatatattatgcattgtccataccaactgagctaagctcacaa 42043129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 526 - 575
Target Start/End: Complemental strand, 46987135 - 46987086
Alignment:
Q  526 cggatcttgcatatattatgcattgtctttactaagagagctaagctcac 575  Q
    |||| |||||||||||||||||||||| |||| ||  |||||||||||||    
T  46987135 cggaccttgcatatattatgcattgtccttaccaactgagctaagctcac 46987086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 503 - 574
Target Start/End: Complemental strand, 20079794 - 20079723
Alignment:
Q  503 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctca 574  Q
    |||||||||| | |||||||||| |||||||||||||||||| |||||||| ||||||  ||| ||||||||    
T  20079794 tgtggtggccgaggtttgaatcttggatcttgcatatattatacattgtctctactaactgagttaagctca 20079723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 503 - 575
Target Start/End: Original strand, 47377338 - 47377410
Alignment:
Q  503 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctcac 575  Q
    |||||||||||||||||||| |||| | |||| ||||||||||||||||| |||| ||  ||| |||||||||    
T  47377338 tgtggtggccaatgtttgaacctcgaaccttgtatatattatgcattgtccttaccaactgagttaagctcac 47377410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 535 - 581
Target Start/End: Complemental strand, 22843504 - 22843458
Alignment:
Q  535 catatattatgcattgtctttactaagagagctaagctcacaaggat 581  Q
    ||||||||||||||||||||||||||  |||||||||||||| ||||    
T  22843504 catatattatgcattgtctttactaactgagctaagctcacatggat 22843458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 526 - 575
Target Start/End: Original strand, 8113574 - 8113623
Alignment:
Q  526 cggatcttgcatatattatgcattgtctttactaagagagctaagctcac 575  Q
    ||||||||||||||||||||||||||| |||| ||  |||||||||||||    
T  8113574 cggatcttgcatatattatgcattgtccttaccaactgagctaagctcac 8113623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 503 - 580
Target Start/End: Original strand, 18870714 - 18870791
Alignment:
Q  503 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctcacaagga 580  Q
    |||||||||| | |||||||||  ||| ||||||||||||||||||||||  ||| ||  ||||||||||||| ||||    
T  18870714 tgtggtggccgaggtttgaatcatggaccttgcatatattatgcattgtccctaccaactgagctaagctcacgagga 18870791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 503 - 580
Target Start/End: Complemental strand, 45432020 - 45431943
Alignment:
Q  503 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctcacaagga 580  Q
    |||||||||||  ||||||| | |||| ||||||||||||||||||||||  ||| ||  |||||||||| |||||||    
T  45432020 tgtggtggccagggtttgaaccccggaccttgcatatattatgcattgtccctaccaactgagctaagctaacaagga 45431943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 505 - 580
Target Start/End: Complemental strand, 5349598 - 5349523
Alignment:
Q  505 tggtggccaatgtttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctcacaagga 580  Q
    |||||||||  ||||||| |||||| ||||||||||| |||||||||| |||| ||| ||| ||| ||||| ||||    
T  5349598 tggtggccagggtttgaacctcggaccttgcatatataatgcattgtccttaccaagtgagttaaactcacgagga 5349523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 517 - 572
Target Start/End: Original strand, 40575612 - 40575667
Alignment:
Q  517 tttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaagct 572  Q
    |||||| | |||| ||||||||||||||||||||||| ||||||  ||||||||||    
T  40575612 tttgaaccccggaccttgcatatattatgcattgtctatactaattgagctaagct 40575667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 518 - 552
Target Start/End: Original strand, 12746361 - 12746395
Alignment:
Q  518 ttgaatctcggatcttgcatatattatgcattgtc 552  Q
    |||||||||||| ||||||||||||||||||||||    
T  12746361 ttgaatctcggaccttgcatatattatgcattgtc 12746395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 526 - 580
Target Start/End: Original strand, 33633330 - 33633384
Alignment:
Q  526 cggatcttgcatatattatgcattgtctttactaagagagctaagctcacaagga 580  Q
    |||||||| ||||||||||||||||||| ||||||  ||| ||||||||| ||||    
T  33633330 cggatcttacatatattatgcattgtctatactaactgagttaagctcacgagga 33633384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 531 - 580
Target Start/End: Original strand, 1149086 - 1149135
Alignment:
Q  531 cttgcatatattatgcattgtctttactaagagagctaagctcacaagga 580  Q
    |||||||||||||||||||||| |||| ||  ||||||||||||| ||||    
T  1149086 cttgcatatattatgcattgtccttaccaactgagctaagctcacgagga 1149135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 516 - 581
Target Start/End: Original strand, 5428438 - 5428503
Alignment:
Q  516 gtttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctcacaaggat 581  Q
    |||||||||  ||| ||||||||||||||||||||| ||||  ||  ||||||| |||||||||||    
T  5428438 gtttgaatcctggaccttgcatatattatgcattgtttttatcaattgagctaaactcacaaggat 5428503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 531 - 580
Target Start/End: Original strand, 16980371 - 16980420
Alignment:
Q  531 cttgcatatattatgcattgtctttactaagagagctaagctcacaagga 580  Q
    |||||||||||||||||||||| |||| ||  ||||||||||||| ||||    
T  16980371 cttgcatatattatgcattgtccttaccaactgagctaagctcacgagga 16980420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 516 - 580
Target Start/End: Original strand, 24120422 - 24120487
Alignment:
Q  516 gtttgaatctcggatcttgcatatattatgca-ttgtctttactaagagagctaagctcacaagga 580  Q
    ||||||| | |||||||||||||||||||||| |||||| ||| ||  ||||||||||||| ||||    
T  24120422 gtttgaaccgcggatcttgcatatattatgcatttgtctctaccaactgagctaagctcacgagga 24120487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 531 - 580
Target Start/End: Complemental strand, 53996343 - 53996294
Alignment:
Q  531 cttgcatatattatgcattgtctttactaagagagctaagctcacaagga 580  Q
    ||||||||||||||||||||||  ||| ||  ||||||||||||||||||    
T  53996343 cttgcatatattatgcattgtccataccaactgagctaagctcacaagga 53996294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 503 - 581
Target Start/End: Complemental strand, 17704085 - 17704007
Alignment:
Q  503 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctcacaaggat 581  Q
    |||||||||| | ||||||||| | || |||||||||||||||||||||| |||| ||  ||||||||||||| |||||    
T  17704085 tgtggtggccgaggtttgaatcacagaccttgcatatattatgcattgtccttaccaactgagctaagctcacgaggat 17704007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 516 - 552
Target Start/End: Original strand, 24696008 - 24696044
Alignment:
Q  516 gtttgaatctcggatcttgcatatattatgcattgtc 552  Q
    |||||||||||||||||||||||||||||||||||||    
T  24696008 gtttgaatctcggatcttgcatatattatgcattgtc 24696044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 526 - 580
Target Start/End: Complemental strand, 13286180 - 13286126
Alignment:
Q  526 cggatcttgcatatattatgcattgtctttactaagagagctaagctcacaagga 580  Q
    |||||||||||||||||||||||||||| ||| ||  ||||||||||||| ||||    
T  13286180 cggatcttgcatatattatgcattgtctataccaactgagctaagctcacgagga 13286126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 526 - 574
Target Start/End: Complemental strand, 15438502 - 15438454
Alignment:
Q  526 cggatcttgcatatattatgcattgtctttactaagagagctaagctca 574  Q
    |||| |||||||||||||||||||||| |||| ||| ||||||||||||    
T  15438502 cggaccttgcatatattatgcattgtccttaccaagtgagctaagctca 15438454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 526 - 574
Target Start/End: Complemental strand, 15529806 - 15529758
Alignment:
Q  526 cggatcttgcatatattatgcattgtctttactaagagagctaagctca 574  Q
    |||| |||||||||||||||||||||| |||| ||| ||||||||||||    
T  15529806 cggaccttgcatatattatgcattgtccttaccaagtgagctaagctca 15529758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 531 - 570
Target Start/End: Original strand, 11603854 - 11603893
Alignment:
Q  531 cttgcatatattatgcattgtctttactaagagagctaag 570  Q
    |||||||||||||||||||||| ||||||| |||||||||    
T  11603854 cttgcatatattatgcattgtccttactaacagagctaag 11603893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 503 - 552
Target Start/End: Complemental strand, 18147528 - 18147479
Alignment:
Q  503 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtc 552  Q
    |||||||||| ||||||||||| | |||||| ||||| ||||||||||||    
T  18147528 tgtggtggccgatgtttgaatcccagatctttcatattttatgcattgtc 18147479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 526 - 575
Target Start/End: Complemental strand, 19778114 - 19778065
Alignment:
Q  526 cggatcttgcatatattatgcattgtctttactaagagagctaagctcac 575  Q
    |||| |||||||||||||||||||||| |||| ||  |||||||||||||    
T  19778114 cggaccttgcatatattatgcattgtccttaccaactgagctaagctcac 19778065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 503 - 552
Target Start/End: Original strand, 21589190 - 21589239
Alignment:
Q  503 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtc 552  Q
    ||||||| |||| ||||||||| |||| ||| ||||||||||||||||||    
T  21589190 tgtggtgtccaaggtttgaatcccggaccttccatatattatgcattgtc 21589239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 531 - 576
Target Start/End: Complemental strand, 30623337 - 30623292
Alignment:
Q  531 cttgcatatattatgcattgtctttactaagagagctaagctcaca 576  Q
    |||||||||||||||||||||| |||| ||  ||||||||||||||    
T  30623337 cttgcatatattatgcattgtccttaccaactgagctaagctcaca 30623292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 503 - 552
Target Start/End: Complemental strand, 33743647 - 33743598
Alignment:
Q  503 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtc 552  Q
    |||||||||| | ||||||| |||||| ||||||||| ||||||||||||    
T  33743647 tgtggtggccgaagtttgaacctcggaccttgcatattttatgcattgtc 33743598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 531 - 580
Target Start/End: Original strand, 37015853 - 37015902
Alignment:
Q  531 cttgcatatattatgcattgtctttactaagagagctaagctcacaagga 580  Q
    ||||||||||||||||||||||| ||| ||  ||||||||||||| ||||    
T  37015853 cttgcatatattatgcattgtctctaccaactgagctaagctcacgagga 37015902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 516 - 557
Target Start/End: Original strand, 42208471 - 42208512
Alignment:
Q  516 gtttgaatctcggatcttgcatatattatgcattgtctttac 557  Q
    ||||||| |||||| |||||||||||||||||||||| ||||    
T  42208471 gtttgaacctcggaccttgcatatattatgcattgtccttac 42208512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 507 - 552
Target Start/End: Complemental strand, 2692283 - 2692238
Alignment:
Q  507 gtggccaatgtttgaatctcggatcttgcatatattatgcattgtc 552  Q
    |||||||  |||||||||||||||||||||||||||||||||||||    
T  2692283 gtggccagggtttgaatctcggatcttgcatatattatgcattgtc 2692238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 516 - 560
Target Start/End: Original strand, 3808120 - 3808164
Alignment:
Q  516 gtttgaatctcggatcttgcatatattatgcattgtctttactaa 560  Q
    |||||||||||||| |||||||||||||||||||||| |||||||    
T  3808120 gtttgaatctcggaccttgcatatattatgcattgtccttactaa 3808164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 516 - 552
Target Start/End: Original strand, 6864135 - 6864171
Alignment:
Q  516 gtttgaatctcggatcttgcatatattatgcattgtc 552  Q
    |||||||| ||||||||||||||||||||||||||||    
T  6864135 gtttgaatatcggatcttgcatatattatgcattgtc 6864171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 528 - 580
Target Start/End: Original strand, 7083006 - 7083058
Alignment:
Q  528 gatcttgcatatattatgcattgtctttactaagagagctaagctcacaagga 580  Q
    ||||||||||||||||||||||||| |||| ||  ||||||||||||| ||||    
T  7083006 gatcttgcatatattatgcattgtccttaccaattgagctaagctcacgagga 7083058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 516 - 556
Target Start/End: Complemental strand, 8809365 - 8809325
Alignment:
Q  516 gtttgaatctcggatcttgcatatattatgcattgtcttta 556  Q
    ||||||| |||||||||||||||||||||||||||| ||||    
T  8809365 gtttgaacctcggatcttgcatatattatgcattgttttta 8809325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 526 - 580
Target Start/End: Original strand, 655761 - 655815
Alignment:
Q  526 cggatcttgcatatattatgcattgtctttactaagagagctaagctcacaagga 580  Q
    |||| ||||||||||||||||||||||  ||| ||  ||||||||||||||||||    
T  655761 cggaccttgcatatattatgcattgtcgataccaactgagctaagctcacaagga 655815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 504 - 553
Target Start/End: Original strand, 1918448 - 1918497
Alignment:
Q  504 gtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtct 553  Q
    ||||||||  ||||| ||| |||||| |||||||||||||||||||||||    
T  1918448 gtggtggctgatgttcgaacctcggaccttgcatatattatgcattgtct 1918497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 526 - 575
Target Start/End: Complemental strand, 4450311 - 4450262
Alignment:
Q  526 cggatcttgcatatattatgcattgtctttactaagagagctaagctcac 575  Q
    |||| ||||||||||||||||||||||||||  ||  |||||||||||||    
T  4450311 cggaccttgcatatattatgcattgtctttatcaactgagctaagctcac 4450262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 516 - 553
Target Start/End: Original strand, 8130461 - 8130498
Alignment:
Q  516 gtttgaatctcggatcttgcatatattatgcattgtct 553  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  8130461 gtttgaatctcggaccttgcatattttatgcattgtct 8130498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 531 - 580
Target Start/End: Complemental strand, 8810684 - 8810635
Alignment:
Q  531 cttgcatatattatgcattgtctttactaagagagctaagctcacaagga 580  Q
    ||||||||||||||| ||||||||||| ||  ||||||||||||| ||||    
T  8810684 cttgcatatattatgtattgtctttaccaactgagctaagctcacgagga 8810635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 503 - 580
Target Start/End: Complemental strand, 9923312 - 9923235
Alignment:
Q  503 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctcacaagga 580  Q
    ||||||| |||| ||||||||| || | |||| ||||||||||||||||| |||  ||  ||||||| ||||||||||    
T  9923312 tgtggtgtccaaggtttgaatcccgaaccttgtatatattatgcattgtccttatcaattgagctaaactcacaagga 9923235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 516 - 557
Target Start/End: Complemental strand, 31971588 - 31971547
Alignment:
Q  516 gtttgaatctcggatcttgcatatattatgcattgtctttac 557  Q
    ||||||| |||||| |||||||||||||||||||||| ||||    
T  31971588 gtttgaacctcggaccttgcatatattatgcattgtccttac 31971547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 503 - 580
Target Start/End: Complemental strand, 7230352 - 7230275
Alignment:
Q  503 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctcacaagga 580  Q
    |||||||||| | ||||||| | |||| |||||||||||||||||||||| |||| ||  ||||||||||||| ||||    
T  7230352 tgtggtggccgaggtttgaaccccggaccttgcatatattatgcattgtccttaccaactgagctaagctcacgagga 7230275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 526 - 580
Target Start/End: Complemental strand, 19854614 - 19854560
Alignment:
Q  526 cggatcttgcatatattatgcattgtctttactaagagagctaagctcacaagga 580  Q
    |||||||||||||||||||||||||||  ||| ||  ||||||||||||||||||    
T  19854614 cggatcttgcatatattatgcattgtccataccaactgagctaagctcacaagga 19854560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 516 - 574
Target Start/End: Complemental strand, 37921805 - 37921747
Alignment:
Q  516 gtttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctca 574  Q
    ||||||||| |||| |||||||||||||||||||||| |||||||  ||||||| ||||    
T  37921805 gtttgaatcccggaccttgcatatattatgcattgtccttactaactgagctaaactca 37921747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 526 - 575
Target Start/End: Original strand, 7922262 - 7922311
Alignment:
Q  526 cggatcttgcatatattatgcattgtctttactaagagagctaagctcac 575  Q
    |||||||||||||||||||||||||||||||| ||  ||| |||||||||    
T  7922262 cggatcttgcatatattatgcattgtctttaccaactgagataagctcac 7922311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 503 - 580
Target Start/End: Original strand, 50362128 - 50362205
Alignment:
Q  503 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctcacaagga 580  Q
    |||||||||||| ||||||| |  ||| ||||||||||||||||||||||  ||| ||  ||||||||||||| ||||    
T  50362128 tgtggtggccaaggtttgaaccctggaccttgcatatattatgcattgtccctaccaactgagctaagctcacgagga 50362205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 503 - 575
Target Start/End: Complemental strand, 54500641 - 54500569
Alignment:
Q  503 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctcac 575  Q
    |||||||| || |||||||| | |||| ||| ||||||||||||||||||| ||| ||  |||||||||||||    
T  54500641 tgtggtggtcagtgtttgaaccccggaccttacatatattatgcattgtctctaccaactgagctaagctcac 54500569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 521 - 580
Target Start/End: Complemental strand, 36203290 - 36203231
Alignment:
Q  521 aatctcggatcttgcatatattatgcattgtctttactaagagagctaagctcacaagga 580  Q
    ||||||||| |||||||||||||||||||||| |||  ||  ||||||||||||| ||||    
T  36203290 aatctcggaccttgcatatattatgcattgtccttatcaactgagctaagctcacgagga 36203231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 514 - 545
Target Start/End: Complemental strand, 42594603 - 42594572
Alignment:
Q  514 atgtttgaatctcggatcttgcatatattatg 545  Q
    ||||||||||||||||||||||||||||||||    
T  42594603 atgtttgaatctcggatcttgcatatattatg 42594572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 503 - 570
Target Start/End: Original strand, 56551581 - 56551648
Alignment:
Q  503 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaag 570  Q
    ||||||||||   ||||||| |||||| |||||||||||||||||||||| |||| ||  ||||||||    
T  56551581 tgtggtggccggggtttgaacctcggaccttgcatatattatgcattgtccttaccaactgagctaag 56551648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 526 - 580
Target Start/End: Original strand, 10303523 - 10303577
Alignment:
Q  526 cggatcttgcatatattatgcattgtctttactaagagagctaagctcacaagga 580  Q
    |||||||||||||| |||||||||||| |||| ||  ||||||||||||| ||||    
T  10303523 cggatcttgcatattttatgcattgtccttaccaactgagctaagctcacgagga 10303577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 516 - 574
Target Start/End: Original strand, 11286783 - 11286841
Alignment:
Q  516 gtttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctca 574  Q
    ||||||||||| || ||||||||||||||||||||||| ||| ||  || |||||||||    
T  11286783 gtttgaatctcagaccttgcatatattatgcattgtctctaccaactgaactaagctca 11286841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 531 - 581
Target Start/End: Complemental strand, 31780789 - 31780739
Alignment:
Q  531 cttgcatatattatgcattgtctttactaagagagctaagctcacaaggat 581  Q
    ||||||||| |||||||||||| |||| ||  |||||||||||||||||||    
T  31780789 cttgcatattttatgcattgtccttaccaactgagctaagctcacaaggat 31780739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 516 - 586
Target Start/End: Complemental strand, 37193308 - 37193238
Alignment:
Q  516 gtttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctcacaaggatccaca 586  Q
    ||||||| | |||| |||||||||||||| |||||||  ||||||  ||||||||||||| ||||| ||||    
T  37193308 gtttgaaccccggaccttgcatatattatacattgtccatactaactgagctaagctcacgaggattcaca 37193238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 531 - 580
Target Start/End: Complemental strand, 6087791 - 6087742
Alignment:
Q  531 cttgcatatattatgcattgtctttactaagagagctaagctcacaagga 580  Q
    ||||||||||||||||||| ||| ||| ||  ||||||||||||||||||    
T  6087791 cttgcatatattatgcattatctataccaactgagctaagctcacaagga 6087742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 531 - 560
Target Start/End: Complemental strand, 6520115 - 6520086
Alignment:
Q  531 cttgcatatattatgcattgtctttactaa 560  Q
    ||||||||||||||||||||||||||||||    
T  6520115 cttgcatatattatgcattgtctttactaa 6520086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 503 - 580
Target Start/End: Complemental strand, 12322745 - 12322668
Alignment:
Q  503 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctcacaagga 580  Q
    |||||||||  | ||||||| | |||| ||||||||||||||||||||||  ||| ||  ||||||||||||| ||||    
T  12322745 tgtggtggctgaggtttgaaccccggaacttgcatatattatgcattgtccgtaccaactgagctaagctcacgagga 12322668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 503 - 556
Target Start/End: Original strand, 16733508 - 16733561
Alignment:
Q  503 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtcttta 556  Q
    |||||||||| | | ||||| ||||||||||||||||||||| |||| ||||||    
T  16733508 tgtggtggccgagggttgaacctcggatcttgcatatattatacattatcttta 16733561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 531 - 580
Target Start/End: Complemental strand, 34247484 - 34247435
Alignment:
Q  531 cttgcatatattatgcattgtctttactaagagagctaagctcacaagga 580  Q
    |||||||||||||||||||||| |||| ||  ||||||| ||||||||||    
T  34247484 cttgcatatattatgcattgtccttaccaactgagctaaactcacaagga 34247435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 503 - 580
Target Start/End: Complemental strand, 1794668 - 1794591
Alignment:
Q  503 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctcacaagga 580  Q
    |||||||| | | ||||||| | |||||||||||||||||||||||||||  ||||||  ||||||||||||| ||||    
T  1794668 tgtggtggtcgaggtttgaaccccggatcttgcatatattatgcattgtccatactaactgagctaagctcacgagga 1794591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 517 - 580
Target Start/End: Complemental strand, 34632227 - 34632164
Alignment:
Q  517 tttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctcacaagga 580  Q
    |||||| ||||||||||||||||||||| |||||||| ||| ||  ||||||||||||| ||||    
T  34632227 tttgaacctcggatcttgcatatattatacattgtctataccaactgagctaagctcacgagga 34632164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 503 - 557
Target Start/End: Complemental strand, 46707944 - 46707890
Alignment:
Q  503 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtctttac 557  Q
    |||||||||| ||||||||| | |||| |||||||||||||||||||||| ||||    
T  46707944 tgtggtggccgatgtttgaaccccggaacttgcatatattatgcattgtccttac 46707890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 503 - 574
Target Start/End: Original strand, 15854077 - 15854148
Alignment:
Q  503 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctca 574  Q
    |||||||||| | |||||||||  |||||||||||||||||||||| |||  ||| ||  ||||||||||||    
T  15854077 tgtggtggccgaggtttgaatcctggatcttgcatatattatgcatcgtccataccaactgagctaagctca 15854148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 525 - 580
Target Start/End: Complemental strand, 28032334 - 28032279
Alignment:
Q  525 tcggatcttgcatatattatgcattgtctttactaagagagctaagctcacaagga 580  Q
    ||||| ||||||||||||||||||||| ||||||||  ||||||| ||||| ||||    
T  28032334 tcggaccttgcatatattatgcattgtttttactaaccgagctaaactcacgagga 28032279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 526 - 580
Target Start/End: Original strand, 52441523 - 52441577
Alignment:
Q  526 cggatcttgcatatattatgcattgtctttactaagagagctaagctcacaagga 580  Q
    |||| ||||||||||||||||||||||| ||| ||  ||||||||||||| ||||    
T  52441523 cggaccttgcatatattatgcattgtctataccaactgagctaagctcacgagga 52441577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 526 - 575
Target Start/End: Original strand, 9639829 - 9639878
Alignment:
Q  526 cggatcttgcatatattatgcattgtctttactaagagagctaagctcac 575  Q
    |||| |||||||||||||||||||||| |||| ||| ||| |||||||||    
T  9639829 cggaccttgcatatattatgcattgtccttaccaagtgagttaagctcac 9639878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 504 - 577
Target Start/End: Original strand, 34521180 - 34521253
Alignment:
Q  504 gtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctcacaa 577  Q
    ||||||||| | ||||||| | |||| ||||||||||||||||||||||  ||| ||  ||||||| |||||||    
T  34521180 gtggtggccgaggtttgaaccccggaccttgcatatattatgcattgtccataccaactgagctaaactcacaa 34521253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 526 - 575
Target Start/End: Original strand, 38448878 - 38448927
Alignment:
Q  526 cggatcttgcatatattatgcattgtctttactaagagagctaagctcac 575  Q
    |||| |||||||||||||||||||||| |||| ||  |||||||||||||    
T  38448878 cggaccttgcatatattatgcattgtccttaccaactgagctaagctcac 38448927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 516 - 549
Target Start/End: Complemental strand, 49868070 - 49868037
Alignment:
Q  516 gtttgaatctcggatcttgcatatattatgcatt 549  Q
    |||||||||||||| |||||||||||||||||||    
T  49868070 gtttgaatctcggaccttgcatatattatgcatt 49868037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 503 - 568
Target Start/End: Complemental strand, 23219032 - 23218967
Alignment:
Q  503 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtctttactaagagagcta 568  Q
    |||||||||| | ||||||| |||||| ||||||||| |||| |||||||||||| ||| ||||||    
T  23219032 tgtggtggccgaagtttgaacctcggaccttgcatattttatacattgtctttaccaagtgagcta 23218967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 503 - 556
Target Start/End: Original strand, 31305875 - 31305928
Alignment:
Q  503 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtcttta 556  Q
    ||||| ||||||||||||||  ||||| ||| ||||||||||||||||||||||    
T  31305875 tgtggcggccaatgtttgaacttcggaccttacatatattatgcattgtcttta 31305928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 528 - 580
Target Start/End: Complemental strand, 1642381 - 1642329
Alignment:
Q  528 gatcttgcatatattatgcattgtctttactaagagagctaagctcacaagga 580  Q
    |||||||||||||||||||||||| ||||| ||  |||||| |||||||||||    
T  1642381 gatcttgcatatattatgcattgtttttaccaactgagctatgctcacaagga 1642329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 516 - 560
Target Start/End: Complemental strand, 18557913 - 18557869
Alignment:
Q  516 gtttgaatctcggatcttgcatatattatgcattgtctttactaa 560  Q
    |||||||||||||| |||||| ||||||||||||||| |||||||    
T  18557913 gtttgaatctcggaccttgcacatattatgcattgtccttactaa 18557869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 517 - 577
Target Start/End: Complemental strand, 20927697 - 20927637
Alignment:
Q  517 tttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctcacaa 577  Q
    |||||| |||||||||||||||||||||| ||||||  ||| ||  |||||||||||||||    
T  20927697 tttgaacctcggatcttgcatatattatgtattgtccataccaactgagctaagctcacaa 20927637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 503 - 575
Target Start/End: Original strand, 37614416 - 37614488
Alignment:
Q  503 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctcac 575  Q
    |||||||||| | ||||||| |||| | |||||||||||||||| |||||| ||| ||  |||||||||||||    
T  37614416 tgtggtggccgaagtttgaacctcgaaccttgcatatattatgcgttgtctctaccaactgagctaagctcac 37614488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 525 - 576
Target Start/End: Original strand, 9123856 - 9123907
Alignment:
Q  525 tcggatcttgcatatattatgcattgtctttactaagagagctaagctcaca 576  Q
    ||||||||| ||||||||||||||||||||||| ||  ||| ||||||||||    
T  9123856 tcggatcttacatatattatgcattgtctttaccaactgagttaagctcaca 9123907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 531 - 574
Target Start/End: Complemental strand, 13409472 - 13409429
Alignment:
Q  531 cttgcatatattatgcattgtctttactaagagagctaagctca 574  Q
    ||||||||||||||||||||||||||||||  ||||||| ||||    
T  13409472 cttgcatatattatgcattgtctttactaactgagctaaactca 13409429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 516 - 582
Target Start/End: Original strand, 16701583 - 16701649
Alignment:
Q  516 gtttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctcacaaggatc 582  Q
    ||||||||| |||| |||||||||||||| |||||||  ||| ||  ||||||||||||| ||||||    
T  16701583 gtttgaatcccggaccttgcatatattattcattgtccctaccaactgagctaagctcacgaggatc 16701649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 526 - 580
Target Start/End: Complemental strand, 18331756 - 18331702
Alignment:
Q  526 cggatcttgcatatattatgcattgtctttactaagagagctaagctcacaagga 580  Q
    |||| ||||||||| ||||||||||||  ||| ||| ||||||||||||||||||    
T  18331756 cggaccttgcatattttatgcattgtccataccaagtgagctaagctcacaagga 18331702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 503 - 552
Target Start/End: Complemental strand, 3389234 - 3389185
Alignment:
Q  503 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtc 552  Q
    |||| ||||| ||||||||| | | |||||||||||||||||||||||||    
T  3389234 tgtgatggccgatgtttgaaccccagatcttgcatatattatgcattgtc 3389185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 503 - 580
Target Start/End: Complemental strand, 5485258 - 5485181
Alignment:
Q  503 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctcacaagga 580  Q
    |||||||||||| ||| ||| | ||||  |||||||||||||||||||||  ||| ||  ||||||||||||| ||||    
T  5485258 tgtggtggccaaggttagaaccccggacattgcatatattatgcattgtccctaccaactgagctaagctcacgagga 5485181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 531 - 580
Target Start/End: Original strand, 18489093 - 18489142
Alignment:
Q  531 cttgcatatattatgcattgtctttactaagagagctaagctcacaagga 580  Q
    ||||||||||||||||||||||| ||| ||  ||||||| ||||||||||    
T  18489093 cttgcatatattatgcattgtctataccaactgagctaaactcacaagga 18489142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 531 - 580
Target Start/End: Complemental strand, 30893977 - 30893928
Alignment:
Q  531 cttgcatatattatgcattgtctttactaagagagctaagctcacaagga 580  Q
    ||||||||||||||||||||||||||| ||  ||| ||||||||| ||||    
T  30893977 cttgcatatattatgcattgtctttacaaactgagttaagctcacgagga 30893928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 531 - 580
Target Start/End: Original strand, 36321511 - 36321560
Alignment:
Q  531 cttgcatatattatgcattgtctttactaagagagctaagctcacaagga 580  Q
    |||||||||||||||||||||| |||| ||  ||||||||||||| ||||    
T  36321511 cttgcatatattatgcattgtccttaccaactgagctaagctcacgagga 36321560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 503 - 580
Target Start/End: Complemental strand, 37932402 - 37932325
Alignment:
Q  503 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctcacaagga 580  Q
    |||||||||||  ||| ||| | |||| ||||||||||||||||||||||  ||| ||  ||||||||||||| ||||    
T  37932402 tgtggtggccagggttcgaaccccggaccttgcatatattatgcattgtccataccaactgagctaagctcacgagga 37932325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 503 - 552
Target Start/End: Complemental strand, 36359386 - 36359337
Alignment:
Q  503 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtc 552  Q
    |||||||||||| ||||||| | |||| ||||||||||||||||||||||    
T  36359386 tgtggtggccaaggtttgaaccccggaccttgcatatattatgcattgtc 36359337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 524 - 580
Target Start/End: Complemental strand, 7206176 - 7206120
Alignment:
Q  524 ctcggatcttgcatatattatgcattgtctttactaagagagctaagctcacaagga 580  Q
    |||||| ||||||||||||||||||||||| ||| ||  ||||||||||||| ||||    
T  7206176 ctcggaccttgcatatattatgcattgtctctaccaactgagctaagctcacgagga 7206120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 503 - 551
Target Start/End: Complemental strand, 32204616 - 32204568
Alignment:
Q  503 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgt 551  Q
    |||||||||| | ||| |||||| |||||||||||||||||||||||||    
T  32204616 tgtggtggccgaggttcgaatcttggatcttgcatatattatgcattgt 32204568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 529 - 576
Target Start/End: Complemental strand, 14944208 - 14944161
Alignment:
Q  529 atcttgcatatattatgcattgtctttactaagagagctaagctcaca 576  Q
    ||||| |||||||||||||||||| |||||||| ||| ||||||||||    
T  14944208 atcttacatatattatgcattgtccttactaagtgagttaagctcaca 14944161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 531 - 578
Target Start/End: Original strand, 20120738 - 20120785
Alignment:
Q  531 cttgcatatattatgcattgtctttactaagagagctaagctcacaag 578  Q
    |||||||||||||||||||||| |||| ||  ||||||||||||||||    
T  20120738 cttgcatatattatgcattgtccttaccaactgagctaagctcacaag 20120785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 526 - 576
Target Start/End: Complemental strand, 4056839 - 4056789
Alignment:
Q  526 cggatcttgcatatattatgcattgtctttactaagagagctaagctcaca 576  Q
    |||| |||||||||||||||||||||| |||| ||  ||||||||||||||    
T  4056839 cggaccttgcatatattatgcattgtccttaccaaccgagctaagctcaca 4056789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 503 - 577
Target Start/End: Complemental strand, 13000757 - 13000683
Alignment:
Q  503 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtctttactaagagagctaagctcacaa 577  Q
    |||||| ||| | |||| || |||||| ||| ||||||||||||||| ||||||| ||  |||||||||||||||    
T  13000757 tgtggtagccgaggtttaaacctcggaccttacatatattatgcattatctttaccaactgagctaagctcacaa 13000683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 516 - 557
Target Start/End: Complemental strand, 4138050 - 4138009
Alignment:
Q  516 gtttgaatctcggatcttgcatatattatgcattgtctttac 557  Q
    |||||||||||||| |||||||||||||| ||||||| ||||    
T  4138050 gtttgaatctcggaccttgcatatattatacattgtccttac 4138009  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 535 - 580
Target Start/End: Complemental strand, 4238799 - 4238754
Alignment:
Q  535 catatattatgcattgtctttactaagagagctaagctcacaagga 580  Q
    ||||||||||||||||||  ||||||  ||||||||||||||||||    
T  4238799 catatattatgcattgtccatactaactgagctaagctcacaagga 4238754  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 526 - 575
Target Start/End: Complemental strand, 24593425 - 24593376
Alignment:
Q  526 cggatcttgcatatattatgcattgtctttactaagagagctaagctcac 575  Q
    |||| |||||||||||||||||||||| |||| ||  |||||||||||||    
T  24593425 cggaccttgcatatattatgcattgtccttaccaactgagctaagctcac 24593376  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 526 - 575
Target Start/End: Complemental strand, 28771631 - 28771582
Alignment:
Q  526 cggatcttgcatatattatgcattgtctttactaagagagctaagctcac 575  Q
    ||||||||||||||||||||||||||| |||| ||  ||||||| |||||    
T  28771631 cggatcttgcatatattatgcattgtccttaccaactgagctaaactcac 28771582  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 503 - 552
Target Start/End: Complemental strand, 30045525 - 30045476
Alignment:
Q  503 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtc 552  Q
    |||||||||| | |||||||||||| | |||| |||||||||||||||||    
T  30045525 tgtggtggccgaggtttgaatctcgaaccttgtatatattatgcattgtc 30045476  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 503 - 552
Target Start/End: Complemental strand, 30050688 - 30050639
Alignment:
Q  503 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtc 552  Q
    |||||||||| | |||||||||||| | |||| |||||||||||||||||    
T  30050688 tgtggtggccgaggtttgaatctcgaaccttgtatatattatgcattgtc 30050639  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 503 - 552
Target Start/End: Complemental strand, 30141732 - 30141683
Alignment:
Q  503 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtc 552  Q
    |||||||||| | |||||||||||| | |||| |||||||||||||||||    
T  30141732 tgtggtggccgaggtttgaatctcgaaccttgtatatattatgcattgtc 30141683  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 529 - 582
Target Start/End: Original strand, 30762510 - 30762563
Alignment:
Q  529 atcttgcatatattatgcattgtctttactaagagagctaagctcacaaggatc 582  Q
    ||||||||||| ||||||||||||| ||| ||  ||||||| ||||||||||||    
T  30762510 atcttgcatattttatgcattgtctataccaactgagctaaactcacaaggatc 30762563  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 526 - 575
Target Start/End: Original strand, 39068720 - 39068769
Alignment:
Q  526 cggatcttgcatatattatgcattgtctttactaagagagctaagctcac 575  Q
    ||||||||||||||||||||||||||| |||  ||  |||||||||||||    
T  39068720 cggatcttgcatatattatgcattgtccttatcaactgagctaagctcac 39068769  T

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Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 503 - 552
Target Start/End: Original strand, 43004671 - 43004720
Alignment:
Q  503 tgtggtggccaatgtttgaatctcggatcttgcatatattatgcattgtc 552  Q
    |||||||||||   ||||||| ||||| ||||||||||||||||||||||    
T  43004671 tgtggtggccaggatttgaatttcggaccttgcatatattatgcattgtc 43004720  T

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Target: scaffold0712 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0712
Description:

Target: scaffold0712; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 512 - 556
Target Start/End: Original strand, 7234 - 7278
Alignment:
Q  512 caatgtttgaatctcggatcttgcatatattatgcattgtcttta 556  Q
    |||||||||||| ||||||| ||||||||||||||||| ||||||    
T  7234 caatgtttgaatatcggatcatgcatatattatgcattatcttta 7278  T

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Target: scaffold0709 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0709
Description:

Target: scaffold0709; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 512 - 556
Target Start/End: Original strand, 7252 - 7296
Alignment:
Q  512 caatgtttgaatctcggatcttgcatatattatgcattgtcttta 556  Q
    |||||||||||| ||||||| ||||||||||||||||| ||||||    
T  7252 caatgtttgaatatcggatcatgcatatattatgcattatcttta 7296  T

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Target: scaffold1619 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold1619
Description:

Target: scaffold1619; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 516 - 553
Target Start/End: Complemental strand, 1090 - 1053
Alignment:
Q  516 gtttgaatctcggatcttgcatatattatgcattgtct 553  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  1090 gtttgaatcccggaccttgcatatattatgcattgtct 1053  T

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Target: scaffold0896 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 531 - 580
Target Start/End: Complemental strand, 3185 - 3136
Alignment:
Q  531 cttgcatatattatgcattgtctttactaagagagctaagctcacaagga 580  Q
    ||||||||||||||| ||||||||||| ||  ||||||||||||| ||||    
T  3185 cttgcatatattatgtattgtctttaccaactgagctaagctcacgagga 3136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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