View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11553_high_13 (Length: 251)
Name: NF11553_high_13
Description: NF11553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11553_high_13 |
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| [»] scaffold0279 (1 HSPs) |
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Alignment Details
Target: scaffold0279 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: scaffold0279
Description:
Target: scaffold0279; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 545 - 764
Alignment:
| Q |
18 |
ctaaacgcatacatatgtaagccttgaaaatgtcgtaaaaaactaagactctaaggagcggactccaaaacaagaagattccaagaatctatagaaagat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
545 |
ctaaacgcatacatatgtaagccttgaaaatgtcgtaaaaaactaagactctgaggagcggactccaaagcaagaagattccaagaatctatagaaagat |
644 |
T |
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| Q |
118 |
taaagtttgtcatccagtcaacacttttgttgccttgacgtcgtcaaatataaataagttgtgtttgccgtccctccgaagaaaattttgaatgcgctga |
217 |
Q |
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|||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
645 |
taaagtttgtcatccagtcagcacttttgttgccttcacgtcgtcaaatataaataagttgtgtttgccgtccctccgaagaaaattttgaatgcgctga |
744 |
T |
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| Q |
218 |
attaatgaggggatgttccc |
237 |
Q |
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||||||| |||||||||||| |
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| T |
745 |
attaatgtggggatgttccc |
764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 27575941 - 27576160
Alignment:
| Q |
18 |
ctaaacgcatacatatgtaagccttgaaaatgtcgtaaaaaactaagactctaaggagcggactccaaaacaagaagattccaagaatctatagaaagat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
27575941 |
ctaaacgcatacatatgtaagccttgaaaatgtcgtaaaaaactaagactctgaggagcggactccaaagcaagaagattccaagaatctatagaaagat |
27576040 |
T |
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| Q |
118 |
taaagtttgtcatccagtcaacacttttgttgccttgacgtcgtcaaatataaataagttgtgtttgccgtccctccgaagaaaattttgaatgcgctga |
217 |
Q |
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| T |
27576041 |
taaagtttgtcatccagtcagcacttttgttgccttcacgtcgtcaaatataaataagttgtgtttgccgtccctccgaagaaaattttgaatgcgctga |
27576140 |
T |
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| Q |
218 |
attaatgaggggatgttccc |
237 |
Q |
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| T |
27576141 |
attaatgtggggatgttccc |
27576160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 127
Target Start/End: Original strand, 51371269 - 51371304
Alignment:
| Q |
92 |
aagattccaagaatctatagaaagattaaagtttgt |
127 |
Q |
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| T |
51371269 |
aagattccaagaatccatagaaagattaaagtttgt |
51371304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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