View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11553_high_5 (Length: 483)
Name: NF11553_high_5
Description: NF11553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11553_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 454; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 1 - 478
Target Start/End: Complemental strand, 1855333 - 1854856
Alignment:
| Q |
1 |
cgtacagagacgtgagacgaaaaatctcatttccatttgaccttggggatttatgtctaggacttgtatattcttaccataaattaatttggaattgtct |
100 |
Q |
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| T |
1855333 |
cgtacagagatgtgagacgaaaaatctcatttccatttgaccttggggatttatgtctaggacttgtatattcttaccataaattaatttggaattgtct |
1855234 |
T |
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| Q |
101 |
gtacaattgagcataaatttggaatttatgtaacatggtgtatgatcttgtgttgttgaatttcctatgccaaatggatatggaacttttacacctccac |
200 |
Q |
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| T |
1855233 |
gtacaagtgagcataaatttggaatttatgtaacatggtgtatgatcttgtgctgttgaatttcctatgccaaatggatatggaacttttacacctccac |
1855134 |
T |
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| Q |
201 |
aagtgtaattgcagccaggtaggacttgtttaggttgatcagatgcaagtgtaaatgcaactgcttctatcaaatgtgctaatgcagcaagtattattaa |
300 |
Q |
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| T |
1855133 |
aggtgtaattgcagcctggtaggacttgtttaggttgatcagatgcaagtgtaaatgcaactgcttctatcaaatgtgctaatgcagcaagtattattaa |
1855034 |
T |
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| Q |
301 |
tacttgcaggaccttcatttttaaattggagtactgactgacttgtggcctagagtaagggtgtttcgttatttataataaaaacccttccaaattttca |
400 |
Q |
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| T |
1855033 |
tacttgcaggaccttcatttttaaattggagtactgactgacttgtggcctggagtaagggtgtttcgttatttataataaaaacccttccaaattttca |
1854934 |
T |
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| Q |
401 |
tggtattttgctaatttaaataaaagttgcattgacttgcaagttgcatggaagacctgaccatatattcttctctct |
478 |
Q |
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| T |
1854933 |
tggtattttgctaatttaaataaaagttgcattgacttgcaagttgcatggaagacctgaccatatattcttctctct |
1854856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 12 - 248
Target Start/End: Original strand, 1817866 - 1818102
Alignment:
| Q |
12 |
gtgagacgaaaaatctcatttccatttgaccttggggatttatgtctaggacttgtatattcttaccataaattaatttggaattgtctgtacaattgag |
111 |
Q |
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| T |
1817866 |
gtgagactgaaaatttcatttccacttgaccttggggatttatgtccaggacttcgatacccctaggccgaattaattttgagttgtttacacaggtgag |
1817965 |
T |
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| Q |
112 |
cataaatttggaatttatgtaacatggtgtatgatcttgtgttgttgaatttcctatgccaaatggatatggaacttttacacctccacaagtgtaattg |
211 |
Q |
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| T |
1817966 |
ttcaaattttgaatccatgtaacatggtgtatgatgttgtgctgttgaatttcctatgccaaatggatatggaattgttaaatctccacaggtgtaattg |
1818065 |
T |
|
| Q |
212 |
cagccaggtaggacttgtttaggttgatcagatgcaa |
248 |
Q |
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| T |
1818066 |
cagcctggtaggacttgtttaggttgatcagatgcaa |
1818102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 128 - 230
Target Start/End: Original strand, 1844913 - 1845015
Alignment:
| Q |
128 |
atgtaacatggtgtatgatcttgtgttgttgaatttcctatgccaaatggatatggaacttttacacctccacaagtgtaattgcagccaggtaggactt |
227 |
Q |
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| T |
1844913 |
atgtaaaatggtgtatgatcttgtgttgttgaatttcctatgccaaatggatatggaatgtttatatctccacaagtatagttgcagccaggtaggactt |
1845012 |
T |
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| Q |
228 |
gtt |
230 |
Q |
| |
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||| |
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| T |
1845013 |
gtt |
1845015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 16 - 117
Target Start/End: Complemental strand, 37566845 - 37566744
Alignment:
| Q |
16 |
gacgaaaaatctcatttccatttgaccttggggatttatgtctaggacttgtatattcttaccataaattaatttggaattgtctgtacaattgagcata |
115 |
Q |
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|||||||||| |||||||||||||||| || |||||||||||||||||||||| |||||||||| ||||||||||| |||| ||||||| ||||| || |
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| T |
37566845 |
gacgaaaaatttcatttccatttgaccgtgcggatttatgtctaggacttgtagattcttaccacggattaatttggagttgtttgtacaagtgagctta |
37566746 |
T |
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| Q |
116 |
aa |
117 |
Q |
| |
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|| |
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| T |
37566745 |
aa |
37566744 |
T |
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