View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11553_high_6 (Length: 433)
Name: NF11553_high_6
Description: NF11553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11553_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 18 - 332
Target Start/End: Original strand, 51100931 - 51101229
Alignment:
| Q |
18 |
caactcatattttccaagtctcactccttctccactatgcaacttcttcttattctgcttcttcccaaggttcaatatcaccattttcgtaaaaatgtat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
51100931 |
caactcatattttccaagtctcactccttctccactatgcaacttcttcttattctgcttcttcccaaggttcaatatcaccattttcgtaaaaatggat |
51101030 |
T |
|
| Q |
118 |
gaacaactgaaacacccttttgagcacaactttgaaacaacaattttaatatgttgatttctttagttacaatgaacccc-gtggttctgcttttctctt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
51101031 |
gaacaactgaaacacccttttgagcacaactttgaaacaacaattttaatattttgttttctttagttacaatgaacccccgtggttctgcttttctctt |
51101130 |
T |
|
| Q |
217 |
ttcaatgtgtaacgcatgaacaacacaacagagtaggtaggnnnnnnnnnnnnnnnnnnnnnnagacaacggtttaagaaattaaatagcaacagtttct |
316 |
Q |
| |
|
|| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51101131 |
ttaaatgtgtaacgcatgaaca-----acagagtaggtaggtagatagata------------agacaacggtttaagaaattaaatagcaacagtttct |
51101213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University