View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11553_high_7 (Length: 365)

Name: NF11553_high_7
Description: NF11553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11553_high_7
NF11553_high_7
[»] chr1 (15 HSPs)
chr1 (12-365)||(15244056-15244410)
chr1 (15-286)||(39440525-39440795)
chr1 (74-182)||(1972116-1972224)
chr1 (63-182)||(26099888-26100006)
chr1 (30-182)||(19709223-19709375)
chr1 (63-289)||(47900273-47900500)
chr1 (28-286)||(6240994-6241253)
chr1 (129-194)||(15731390-15731455)
chr1 (86-183)||(33078816-33078912)
chr1 (141-194)||(26780495-26780548)
chr1 (20-123)||(15731835-15731938)
chr1 (237-279)||(1972018-1972060)
chr1 (145-194)||(21501895-21501944)
chr1 (238-286)||(19709118-19709166)
chr1 (250-286)||(33078713-33078749)
[»] chr2 (7 HSPs)
chr2 (15-273)||(27467289-27467547)
chr2 (64-184)||(17558388-17558508)
chr2 (139-194)||(25895373-25895428)
chr2 (12-182)||(9789868-9790038)
chr2 (133-196)||(5369920-5369983)
chr2 (140-183)||(21822502-21822545)
chr2 (142-183)||(33856015-33856056)
[»] chr7 (9 HSPs)
chr7 (12-286)||(984109-984383)
chr7 (15-182)||(2476677-2476844)
chr7 (12-279)||(16803412-16803676)
chr7 (12-280)||(26572699-26572971)
chr7 (73-273)||(12865731-12865932)
chr7 (10-281)||(29542125-29542395)
chr7 (82-177)||(8876424-8876519)
chr7 (232-284)||(7228498-7228550)
chr7 (12-70)||(5057101-5057159)
[»] chr6 (1 HSPs)
chr6 (12-286)||(14274596-14274871)
[»] chr4 (7 HSPs)
chr4 (10-220)||(12109953-12110164)
chr4 (35-182)||(50688483-50688630)
chr4 (15-194)||(10179277-10179455)
chr4 (85-286)||(4225232-4225433)
chr4 (12-187)||(7354895-7355070)
chr4 (96-182)||(30500428-30500514)
chr4 (139-175)||(19941017-19941053)
[»] chr8 (9 HSPs)
chr8 (12-182)||(19452541-19452711)
chr8 (12-182)||(19528365-19528535)
chr8 (12-146)||(30122385-30122520)
chr8 (12-153)||(13217878-13218019)
chr8 (190-286)||(30122524-30122620)
chr8 (236-282)||(7635064-7635110)
chr8 (237-286)||(25233536-25233585)
chr8 (15-102)||(37379023-37379110)
chr8 (237-282)||(13218105-13218150)
[»] chr3 (5 HSPs)
chr3 (113-286)||(862324-862497)
chr3 (12-185)||(48559107-48559280)
chr3 (147-183)||(4287889-4287925)
chr3 (98-182)||(32090626-32090710)
chr3 (129-179)||(7720872-7720922)
[»] chr5 (3 HSPs)
chr5 (12-194)||(17468840-17469021)
chr5 (12-182)||(23361421-23361590)
chr5 (12-44)||(16511191-16511223)
[»] scaffold0004 (1 HSPs)
scaffold0004 (68-182)||(119573-119686)


Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 12 - 365
Target Start/End: Complemental strand, 15244410 - 15244056
Alignment:
Q  12 atgaaaacatgaaaaactaaattgatagataaaatatagttaatagaagaatacaatccacaaaggaaggaggtgagcttaaatcatcacctaaataatc 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15244410 atgaaaacatgaaaaactaaattgatagataaaatatagttaatagaagattacaatccacaaaggaaggaggtgagcttaaatcatcacctaaataatc 15244311  T
Q  112 ctaactctaaataattgagaactagctctcatgctcatctataaagaagatgagatggagtgagaactctaatgctactaaccatggttggacttggcca 211  Q
    ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||| | || |||||||||    
T  15244310 ctagctctaaataattgagaactagctctcatgctcatctatagagaagatgagatggagtgagaactctagtgctgctaaccatagctgaacttggcca 15244211  T
Q  212 ctcaattcaagagtgtacaatttttgacccttggtactaacatgtggttgtccttttatagttcaaggccaaccattaagcaaagataaacgagaccgta 311  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  15244210 ctcaattca--agtgtacaatttttgacccttggtactaacatgtggttgtccttttatagttcaaggccaaccattaagcaaagataaacgggaccgta 15244113  T
Q  312 tg---agttcgtaaatagtacgacccggatgacgatctagtatgctgcatcttccta 365  Q
    ||   ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  15244112 tgatcagttcgtaaatagtacgacccggatgacgatctagtatgctacatcttccta 15244056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 15 - 286
Target Start/End: Original strand, 39440525 - 39440795
Alignment:
Q  15 aaaacatgaaaaactaaattgatagataaaatatagttaatagaagaatacaatccacaaaggaaggaggtgagcttaaatcatcacctaaataatccta 114  Q
    |||||||||||||||||||||||| |||||||| || || || |||| ||||||||    ||||  |||||||||| ||| ||||||| |  ||||||||    
T  39440525 aaaacatgaaaaactaaattgatatataaaataaagctagtacaagattacaatccttgtaggagagaggtgagctaaaaacatcacc-acgtaatccta 39440623  T
Q  115 actctaaataattgagaactagctctcatgctcatctataaagaagatgagatggagtgagaactctaatgctactaaccatggttgg-acttggccact 213  Q
    ||||||| | | | |||| || | |||||||||||||||  ||||||||| ||| ||||| ||||||| |||| |||||| |   ||| |||||| | ||    
T  39440624 actctaatttactaagaaataacactcatgctcatctatggagaagatgatatgaagtgaaaactctagtgctcctaaccctaactggaacttggtctct 39440723  T
Q  214 caattcaagagtgtacaatttttgacccttggtactaacatgtggttgtccttttatagttcaaggccaacca 286  Q
    ||||||    ||||| ||| |  ||||||||  |||||||||||||||||||||||||||  ||| |||||||    
T  39440724 caattc-gttgtgtaaaatatcggacccttgacactaacatgtggttgtccttttatagtataagaccaacca 39440795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 74 - 182
Target Start/End: Complemental strand, 1972224 - 1972116
Alignment:
Q  74 aaggaaggaggtgagcttaaatcatcacctaaataatcctaactctaaataattgagaactagctctcatgctcatctataaagaagatgagatggagtg 173  Q
    |||||| ||||||||||| || ||||||| || ||||||||||||||  ||  | ||||||||| ||||||||||||||| |||||||||||||| ||||    
T  1972224 aaggaaagaggtgagcttgaagcatcaccaaagtaatcctaactctagttatctaagaactagcactcatgctcatctatgaagaagatgagatgaagtg 1972125  T
Q  174 agaactcta 182  Q
    | |||||||    
T  1972124 acaactcta 1972116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 63 - 182
Target Start/End: Complemental strand, 26100006 - 26099888
Alignment:
Q  63 tacaatccacaaaggaaggaggtgagcttaaatcatcacctaaataatcctaactctaaataattgagaactagctctcatgctcatctataaagaagat 162  Q
    |||| |||||||| ||| |||||||||||||| ||||||| || ||||  ||||||||| | | | ||||||||| ||||||||||||||| | ||||||    
T  26100006 tacactccacaaatgaaagaggtgagcttaaa-catcaccaaagtaattataactctaattcactaagaactagcactcatgctcatctatgaggaagat 26099908  T
Q  163 gagatggagtgagaactcta 182  Q
    ||||||||| ||||||||||    
T  26099907 gagatggagggagaactcta 26099888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 30 - 182
Target Start/End: Complemental strand, 19709375 - 19709223
Alignment:
Q  30 aaattgatagataaaatatagttaatagaagaatacaatccacaaaggaaggaggtgagcttaaatcatcacctaaataatcctaactctaaataattga 129  Q
    ||||| |||||||||||| |||||| |  | | |||| ||||  || ||| |||| |||||| || |||||||||| ||||||||||| ||||| | | |    
T  19709375 aaattaatagataaaatagagttaagaacatattacactccaacaaagaaagaggcgagcttgaagcatcacctaagtaatcctaactttaaatcactaa 19709276  T
Q  130 gaactagctctcatgctcatctataaagaagatgagatggagtgagaactcta 182  Q
    ||| |||  |||||| |||||||  ||||||||||||||||||||||||||||    
T  19709275 gaagtagaactcatgttcatctaagaagaagatgagatggagtgagaactcta 19709223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 63 - 289
Target Start/End: Original strand, 47900273 - 47900500
Alignment:
Q  63 tacaatccacaaaggaaggaggtgagcttaaatcatcacctaaataatcctaactctaaataattgagaactagctctcatgctcatctataaagaagat 162  Q
    |||||||||  |||||| ||||||||| | || ||||||| ||||||| |||||||||| | | | ||| ||||   |||||||| |||||  |||||||    
T  47900273 tacaatccaagaaggaaagaggtgagcatgaagcatcacccaaataatactaactctaa-tcactaagacctagaattcatgctcgtctatggagaagat 47900371  T
Q  163 gagatggagtgagaactctaatgctactaaccatggttgg-acttggccactcaattcaagagtgtacaatttttgaccc-ttggtactaacatgtggtt 260  Q
    |||| ||||||||||| ||| ||||||| ||| | | ||| ||||| || |||||||||  |||||| ||||   ||||| |||  |||||||||| |||    
T  47900372 gagaaggagtgagaacgctagtgctactcaccctagatggaacttgaccgctcaattcacaagtgtaaaattcaggaccctttgacactaacatgttgtt 47900471  T
Q  261 gtccttttatagttcaaggccaaccatta 289  Q
    |||||||||||||  |||| |||||||||    
T  47900472 gtccttttatagtgtaaggtcaaccatta 47900500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 286
Target Start/End: Complemental strand, 6241253 - 6240994
Alignment:
Q  28 ctaaattgatagataaaatatagttaatagaagaatacaatccacaaaggaaggaggtgagcttaaatcatcacctaaataatcctaactctaaataatt 127  Q
    ||||||||| ||||||||| |||||||||  | | |||||||||  ||||||  | |||||||| || |||||||||| ||| | |||||||   |  ||    
T  6241253 ctaaattgaaagataaaatgtagttaataacatattacaatccaagaaggaaatatgtgagctttaagcatcacctaagtaaccttaactcttttttttt 6241154  T
Q  128 gag-aactagctctcatgctcatctataaagaagatgagatggagtgagaactctaatgctactaaccatggttgg-acttggccactcaattcaagagt 225  Q
     || ||||||| | ||||||||| |||  ||||||||||||||||||||||||||| ||||  |||| || ||||| |||||| | |||||||| | | |    
T  6241153 aaggaactagcacacatgctcatatatgtagaagatgagatggagtgagaactctagtgctgttaactatagttggaacttggtcgctcaattc-acaat 6241055  T
Q  226 gtacaatttttgacccttggtactaacatgtggttgtccttttatagttcaaggccaacca 286  Q
    ||| ||||   ||| | | | |||| ||||||||||||| |||||||| ||||| ||||||    
T  6241054 gtaaaattcaggactcctagcactaccatgtggttgtccctttatagtacaaggtcaacca 6240994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 129 - 194
Target Start/End: Complemental strand, 15731455 - 15731390
Alignment:
Q  129 agaactagctctcatgctcatctataaagaagatgagatggagtgagaactctaatgctactaacc 194  Q
    ||||||||| |||||||||||||||  ||||||||||||||||||||||||| | |||| ||||||    
T  15731455 agaactagcactcatgctcatctatggagaagatgagatggagtgagaactccagtgctgctaacc 15731390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 183
Target Start/End: Complemental strand, 33078912 - 33078816
Alignment:
Q  86 gagcttaaatcatcacctaaataatcctaactctaaataattgagaactagctctcatgctcatctataaagaagatgagatggagtgagaactctaa 183  Q
    ||||| ||| ||||||| || ||||||||||||||| | | | | ||||| | |||||||||||||||  |||||||||||||||||||| |||||||    
T  33078912 gagctaaaagcatcacc-aagtaatcctaactctaattcactaaaaactaacactcatgctcatctatggagaagatgagatggagtgagtactctaa 33078816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 141 - 194
Target Start/End: Original strand, 26780495 - 26780548
Alignment:
Q  141 catgctcatctataaagaagatgagatggagtgagaactctaatgctactaacc 194  Q
    ||||||||| |||  ||||||||||||||| |||||||||||| ||||||||||    
T  26780495 catgctcatttatggagaagatgagatggaatgagaactctaaagctactaacc 26780548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 15731938 - 15731835
Alignment:
Q  20 atgaaaaactaaattgatagataaaatatagttaatagaagaatacaatccacaaaggaaggaggtgagcttaaatcatcacctaaataatcctaactct 119  Q
    |||||||  ||||||||||||||| ||| ||||||||  | | ||||||| |  ||||||  |||||||||| || || || |||| |||||||||||||    
T  15731938 atgaaaagttaaattgatagataatatagagttaataacaaattacaatcaaacaaggaataaggtgagcttgaagcaacatctaagtaatcctaactct 15731839  T
Q  120 aaat 123  Q
    ||||    
T  15731838 aaat 15731835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 279
Target Start/End: Complemental strand, 1972060 - 1972018
Alignment:
Q  237 gacccttggtactaacatgtggttgtccttttatagttcaagg 279  Q
    ||||||||  ||||||||||||||||||||||||||| |||||    
T  1972060 gacccttgacactaacatgtggttgtccttttatagtacaagg 1972018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 194
Target Start/End: Complemental strand, 21501944 - 21501895
Alignment:
Q  145 ctcatctataaagaagatgagatggagtgagaactctaatgctactaacc 194  Q
    |||||||||  |||| ||||||||||||||||||||||| ||| ||||||    
T  21501944 ctcatctattcagaatatgagatggagtgagaactctaaagcttctaacc 21501895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 286
Target Start/End: Complemental strand, 19709166 - 19709118
Alignment:
Q  238 acccttggtactaacatgtggttgtccttttatagttcaaggccaacca 286  Q
    |||||| | ||||||||||||||||| ||||||||| ||||| ||||||    
T  19709166 acccttagcactaacatgtggttgtcattttatagtacaaggtcaacca 19709118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 286
Target Start/End: Complemental strand, 33078749 - 33078713
Alignment:
Q  250 aacatgtggttgtccttttatagttcaaggccaacca 286  Q
    ||||||||||||||||||| |||| ||||||||||||    
T  33078749 aacatgtggttgtccttttttagtacaaggccaacca 33078713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 111; Significance: 6e-56; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 15 - 273
Target Start/End: Original strand, 27467289 - 27467547
Alignment:
Q  15 aaaacatgaaaaactaaattgatagataaaatatagttaatagaagaatacaatccacaaaggaaggaggtgagcttaaatcatcacctaaataatccta 114  Q
    |||||||||||||||||||||| |||||||||| ||||||||||| | | |||||||   |||||| |||||||||| || ||||||| |||||||||||    
T  27467289 aaaacatgaaaaactaaattgaaagataaaatagagttaatagaatattgcaatccaagcaggaagaaggtgagcttgaaacatcacccaaataatccta 27467388  T
Q  115 actctaaataattgagaactagctctcatgctcatctataaagaagatgagatggagtgagaactctaatgctactaaccatggttggacttggccactc 214  Q
    ||||||||| | | ||||||  ||||||||||||| |||  ||||||||||| |||||||||||||||||| |  ||||||| | ||||||| ||| ||     
T  27467389 actctaaatcactaagaactgactctcatgctcatttatggagaagatgagacggagtgagaactctaatgttgttaaccatagctggactttgcctctt 27467488  T
Q  215 aattcaagagtgtacaatttttgacccttggtactaacatgtggttgtccttttatagt 273  Q
    ||||||  || ||| |||||| ||||||||| ||||| | |||||||||||||||||||    
T  27467489 aattcataagcgtaaaattttggacccttggcactaagacgtggttgtccttttatagt 27467547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 64 - 184
Target Start/End: Original strand, 17558388 - 17558508
Alignment:
Q  64 acaatccacaaaggaaggaggtgagcttaaatcatcacctaaataatcctaactctaaataattgagaactagctctcatgctcatctataaagaagatg 163  Q
    ||||||||  ||| || |||||||| || || |||||||||| |||||||||||  |||| | | ||||||||| |||||||||||||||  ||||||||    
T  17558388 acaatccaacaagaaaagaggtgagtttgaagcatcacctaagtaatcctaacttaaaatcactaagaactagcactcatgctcatctatggagaagatg 17558487  T
Q  164 agatggagtgagaactctaat 184  Q
    |||  ||||||||||||||||    
T  17558488 agacagagtgagaactctaat 17558508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 194
Target Start/End: Original strand, 25895373 - 25895428
Alignment:
Q  139 ctcatgctcatctataaagaagatgagatggagtgagaactctaatgctactaacc 194  Q
    |||||||||||||||  |||||||||||||||||||||||| ||| ||| ||||||    
T  25895373 ctcatgctcatctatggagaagatgagatggagtgagaactataaagctgctaacc 25895428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 182
Target Start/End: Original strand, 9789868 - 9790038
Alignment:
Q  12 atgaaaacatgaaaaactaaattgatagataaaatatagttaatagaagaatacaatccacaaaggaaggaggtgagcttaaatcatcacctaaataatc 111  Q
    |||| |||||||||||||||||||||| |||||    | |||||| || | ||||  |||  |||||| |||||||||   ||  |||||| || |||||    
T  9789868 atgagaacatgaaaaactaaattgatatataaagatgaattaataaaatattacagcccaacaaggaaagaggtgagcaacaagtatcaccaaagtaatc 9789967  T
Q  112 ctaactctaaataattgagaactagctctcatgctcatctataaagaagatgagatggagtgagaactcta 182  Q
     ||||||||||| | |    |||||| |||||||||||||||  |||| || |||||||||||||||||||    
T  9789968 ataactctaaatcactatctactagcactcatgctcatctatggagaatattagatggagtgagaactcta 9790038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 133 - 196
Target Start/End: Complemental strand, 5369983 - 5369920
Alignment:
Q  133 ctagctctcatgctcatctataaagaagatgagatggagtgagaactctaatgctactaaccat 196  Q
    ||||| |||||||||||||||  ||||||||||||| | |||||||||||| | | ||||||||    
T  5369983 ctagcactcatgctcatctatggagaagatgagatgaaatgagaactctaaagttgctaaccat 5369920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 140 - 183
Target Start/End: Complemental strand, 21822545 - 21822502
Alignment:
Q  140 tcatgctcatctataaagaagatgagatggagtgagaactctaa 183  Q
    |||||||||||||| || ||||||||||||| ||||||||||||    
T  21822545 tcatgctcatctatgaaaaagatgagatggaatgagaactctaa 21822502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 183
Target Start/End: Original strand, 33856015 - 33856056
Alignment:
Q  142 atgctcatctataaagaagatgagatggagtgagaactctaa 183  Q
    ||||||||||||  |||||||||||||||||||||| |||||    
T  33856015 atgctcatctatggagaagatgagatggagtgagaattctaa 33856056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 3e-42; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 12 - 286
Target Start/End: Complemental strand, 984383 - 984109
Alignment:
Q  12 atgaaaacatgaaaaactaaattgatagataaaatatagttaatagaagaatacaatccacaaaggaaggaggtgagcttaaatcatcacctaaataatc 111  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||  ||||||   |||||  || || ||||||||||||||||    
T  984383 atgaaaacatgaaaaactaaattgatagataaaatatagttcataaaagattacaatccaagaaggaaatgggtgaa-ttgaagcatcacctaaataatc 984285  T
Q  112 ctaactctaaataattgagaactagctctcatgctcatctataaagaagatgagatggagtgagaactctaatgctac-taaccatggttggacttggcc 210  Q
    |||||| ||||| | | |||| || |||| ||||||||||||  |||| |||||||||| ||||||||||  |||||| ||||| | | |||||||| ||    
T  984284 ctaactttaaatcactaagaattaactcttatgctcatctatgtagaatatgagatggattgagaactctggtgctacttaaccttagctggacttgccc 984185  T
Q  211 actcaattcaagagtgtacaatttttgacccttggtactaacatgtggttgtccttttatagttcaaggccaacca 286  Q
     || ||||||  ||| || |||||| ||||| | | |||| ||| ||||||||||||||||||  |||| ||||||    
T  984184 gcttaattcacaagtctaaaattttggacccctagcactaccatatggttgtccttttatagtagaaggtcaacca 984109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 15 - 182
Target Start/End: Original strand, 2476677 - 2476844
Alignment:
Q  15 aaaacatgaaaaactaaattgatagataaaatatagttaatagaagaatacaatccacaaaggaaggaggtgagcttaaatcatcacctaaataatccta 114  Q
    |||||||||||||||||||| |||| |||||||||| || ||  ||| |||| || |  ||||||  |||||||||| || ||||||| || |||||||     
T  2476677 aaaacatgaaaaactaaattaatagctaaaatatagctagtaacagattacagtctaagaaggaaataggtgagcttgaagcatcacccaagtaatcctg 2476776  T
Q  115 actctaaataattgagaactagctctcatgctcatctataaagaagatgagatggagtgagaactcta 182  Q
    ||||||||| | | ||||||||| ||||||||||||||| |||||||||||||  |||||||||||||    
T  2476777 actctaaatcactaagaactagcactcatgctcatctatgaagaagatgagattaagtgagaactcta 2476844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 12 - 279
Target Start/End: Complemental strand, 16803676 - 16803412
Alignment:
Q  12 atgaaaacatgaaaaactaaattgatagataaaatatagttaatagaagaatacaatccacaaaggaaggaggtgagcttaaatcatcacctaaataatc 111  Q
    ||||||||||||||| ||||||||||||||||| || || | |||  ||| ||||||||   || |||   |||||||| ||| ||||||| || |||||    
T  16803676 atgaaaacatgaaaagctaaattgatagataaa-tagagatgatacgagattacaatccttgaatgaaattggtgagctaaaagcatcacc-aagtaatc 16803579  T
Q  112 ctaactctaaataattgagaactagctctcatgctcatctataaagaagatgagatggagtgagaactctaatgctactaaccatggttgg-acttggcc 210  Q
    |||||| ||| ||| | | ||||| | |||||||||||||||  ||||||||||||| |||||||||||||| ||| |||||| | ||||| ||||||||    
T  16803578 ctaactataattaactaaaaactatccctcatgctcatctatggagaagatgagatgtagtgagaactctaaagctgctaaccctagttggaacttggcc 16803479  T
Q  211 actcaattcaagagtgtacaatttttgacccttggtactaacatgtggttgtccttttatagttcaagg 279  Q
     ||||| |||  |    | |||||  ||||||||| ||||||||||||||||||||| ||||| |||||    
T  16803478 tctcaaatcacaa--tcaaaatttcggacccttggcactaacatgtggttgtcctttcatagtacaagg 16803412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 12 - 280
Target Start/End: Original strand, 26572699 - 26572971
Alignment:
Q  12 atgaaaacatgaaaaactaaattgataga----taaaatatagttaatagaagaatacaatccacaaaggaaggaggtgagcttaaatcatcacctaaat 107  Q
    ||||||||||||||| ||||||||||| |    ||||||| ||||| ||  | | | |||||||  |||| | ||||||||||| || ||||||| ||||    
T  26572699 atgaaaacatgaaaagctaaattgatatagatataaaatagagttagtaacatattgcaatccaagaagggaagaggtgagcttgaagcatcacccaaat 26572798  T
Q  108 aatcctaactctaaataattgagaactagctctcatgctcatctataaagaagatgagatggagtgagaactctaatgctactaaccatggttggacttg 207  Q
    |||| ||||||||||| | | ||||||| | |||||||||||||||  ||||||||||||  ||| ||||||||| | || |||||| | | | || |||    
T  26572799 aatcttaactctaaatcactaagaactaacactcatgctcatctatggagaagatgagat-aagtcagaactctagtactgctaaccctagctagaattg 26572897  T
Q  208 gccactcaattcaagagtgtacaatttttgaccc-ttggtactaacatgtggttgtccttttatagttcaaggc 280  Q
    ||| |||||||||  |||||| ||||   ||||| |||| ||||||||||| || |||||||||||| ||||||    
T  26572898 gcctctcaattcacaagtgtaaaattcaggacccattggcactaacatgtgattttccttttatagtacaaggc 26572971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 73 - 273
Target Start/End: Original strand, 12865731 - 12865932
Alignment:
Q  73 aaaggaaggaggtgagcttaaatcatcacctaaataatcctaactctaaataattgagaactagctctcatgctcatctataaagaagatgagatggagt 172  Q
    |||||||  |||||||||| || ||||||| ||||||||||||||| |||| | ||||||||| | |||||||||||||||  |||||||||||| |  |    
T  12865731 aaaggaaataggtgagcttgaagcatcacccaaataatcctaactcgaaatcaatgagaactaccactcatgctcatctatggagaagatgagatagtat 12865830  T
Q  173 gagaactctaatgctactaaccatggttggacttggccactcaattcaagagtgtacaattt-ttgacccttggtactaacatgtggttgtccttttata 271  Q
    ||||||| || || | ||||     | | ||||||||| ||||||| |   || || ||||| | ||||||||| |||||||||||||||||||||||||    
T  12865831 gagaactttagtgttgctaatgccagctagacttggccgctcaatttacatgtataaaatttctagacccttggcactaacatgtggttgtccttttata 12865930  T
Q  272 gt 273  Q
    ||    
T  12865931 gt 12865932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 10 - 281
Target Start/End: Original strand, 29542125 - 29542395
Alignment:
Q  10 agatgaaaacatgaaaaactaaattgatagataaaatatagttaatagaagaatacaatccacaaaggaaggaggtgagcttaaatcatcacctaaataa 109  Q
    |||||||||||||||||| ||||||||||||||||||| || || ||  | | ||||||||    ||||  |||| ||||| ||| ||||||| || | |    
T  29542125 agatgaaaacatgaaaaattaaattgatagataaaatagagctagtacgatattacaatccttggaggagagaggcgagctaaaagcatcacc-aagtta 29542223  T
Q  110 tcctaactctaaataattgagaactagctctcatgctcatctataaagaagatgagatggagtgagaactctaatgctactaaccatggttgg-acttgg 208  Q
    || ||||||||| | | | |||| |||| ||||||||||| |||  ||||||||||||| ||||||||||||| ||| ||||||  | | ||| ||||||    
T  29542224 tcttaactctaattcaatcagaaatagcactcatgctcatatatggagaagatgagatgaagtgagaactctagtgcaactaactctagctggaacttgg 29542323  T
Q  209 ccactcaattcaagagtgtacaatttttgacccttggtactaacatgtggttgtccttttatagttcaaggcc 281  Q
    ||  | ||||||  | |||| |||||   ||| |||| ||||||||||||||| ||||||||| | |||||||    
T  29542324 cctttaaattcacca-tgtaaaatttcgaacctttggcactaacatgtggttgcccttttatattacaaggcc 29542395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 82 - 177
Target Start/End: Complemental strand, 8876519 - 8876424
Alignment:
Q  82 aggtgagcttaaatcatcacctaaataatcctaactctaaataattgagaactagctctcatgctcatctataaagaagatgagatggagtgagaa 177  Q
    ||||||||||||| |||||||||| ||||  |||| |||||| | | ||||||||| ||||||||||||| | |  ||||||||||||||||||||    
T  8876519 aggtgagcttaaagcatcacctaagtaattataaccctaaattactaagaactagcactcatgctcatctgtgagaaagatgagatggagtgagaa 8876424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 284
Target Start/End: Complemental strand, 7228550 - 7228498
Alignment:
Q  232 tttttgacccttggtactaacatgtggttgtccttttatagttcaaggccaac 284  Q
    |||| |||||||||||||||||  | |||||||||||||||| ||||||||||    
T  7228550 ttttggacccttggtactaacacattgttgtccttttatagtacaaggccaac 7228498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 5057101 - 5057159
Alignment:
Q  12 atgaaaacatgaaaaactaaattgatagataaaatatagttaatagaagaatacaatcc 70  Q
    ||||||||||  |||||||||||||||||| |||||||||||  | |||| ||||||||    
T  5057101 atgaaaacatagaaaactaaattgatagattaaatatagttaggacaagattacaatcc 5057159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 12 - 286
Target Start/End: Complemental strand, 14274871 - 14274596
Alignment:
Q  12 atgaaaacatgaaaaactaaattgatagataaaatatagttaatagaagaatacaatccacaaaggaaggaggtgagcttaaatcatcacctaaataatc 111  Q
    ||||||||||| |||||||||||||||||||||||| ||||| ||||| | || |||||    |  || ||||||||||| || |||||| |||||||||    
T  14274871 atgaaaacatggaaaactaaattgatagataaaatagagttactagaatattataatcctagcaaaaatgaggtgagcttgaagcatcacttaaataatc 14274772  T
Q  112 ctaactctaaataattgagaactagctctcatgctcatctataaagaagatgagatggagtgagaactctaatgctac-taaccatggttggacttggcc 210  Q
     ||||| ||||| ||| |||||||||||||||  ||||||||  |||| |||||||||||||||||||||| |||| | ||||| | | | |||||||||    
T  14274771 ttaactataaatcattaagaactagctctcatcttcatctatggagaaaatgagatggagtgagaactctagtgcttcttaaccctagcttgacttggcc 14274672  T
Q  211 actcaattcaagagtgtacaatttttgacccttggtactaacatgtggttgtccttttatagttcaaggccaacca 286  Q
     || ||||||  | |||  |||||  ||||| | || ||| || ||||||||||||||||| | ||||| ||||||    
T  14274671 gcttaattcacaaatgtcaaatttcggacccctagtgctaccacgtggttgtccttttataatacaaggtcaacca 14274596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 10 - 220
Target Start/End: Original strand, 12109953 - 12110164
Alignment:
Q  10 agatgaaaacatgaaaaactaaattgatagataaaatatagttaatagaagaatacaatccacaaaggaaggaggtgagcttaaatcatcacctaaataa 109  Q
    ||||||||||||||||| |||||||  |||||||||||||| ||  |  |||||||||| ||  ||||||| |||||||||| || ||| ||| ||||||    
T  12109953 agatgaaaacatgaaaagctaaattagtagataaaatatagctagcaagagaatacaattcaataaggaagtaggtgagcttgaagcataacccaaataa 12110052  T
Q  110 tcctaactctaaataattgagaactagctctcatgctcatctataaagaagatgagatggagtgagaactctaatgctactaaccatggttgg-acttgg 208  Q
    |||||||||||||| | | ||||||| | ||||||| |||||||  ||||||||| ||||||||||| || || |||| |||||| | | ||| |||||     
T  12110053 tcctaactctaaatcactaagaactaccactcatgcccatctatggagaagatgacatggagtgagagctatagtgctgctaaccgtagctggaacttgt 12110152  T
Q  209 ccactcaattca 220  Q
    ||||||||||||    
T  12110153 ccactcaattca 12110164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 35 - 182
Target Start/End: Complemental strand, 50688630 - 50688483
Alignment:
Q  35 gatagataaaatatagttaatagaagaatacaatccacaaaggaaggaggtgagcttaaatcatcacctaaataatcctaactctaaataattgagaact 134  Q
    ||||||||||||| ||||||| | ||| |||||||||  ||| || ||||||||||| ||  |||||| || ||||| ||||||||||| | | |||||     
T  50688630 gatagataaaatagagttaatggtagattacaatccaagaagtaaagaggtgagcttgaagtatcaccaaagtaatcataactctaaatcactaagaacg 50688531  T
Q  135 agctctcatgctcatctataaagaagatgagatggagtgagaactcta 182  Q
    ||| |||||||||||||||  |||||||||||||||||||||||||||    
T  50688530 agcactcatgctcatctatggagaagatgagatggagtgagaactcta 50688483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 15 - 194
Target Start/End: Complemental strand, 10179455 - 10179277
Alignment:
Q  15 aaaacatgaaaaactaaattgatagataaaatatagttaatagaagaatacaatccacaaaggaaggaggtgagcttaaatcatcacctaaataatccta 114  Q
    ||||||| |||| |||||| ||||||||||||| || || |  |||| ||||||||   ||||||  |||||||||  || ||||| | || ||||||||    
T  10179455 aaaacataaaaagctaaatagatagataaaataaagctagttcaagattacaatccttgaaggaaataggtgagctagaagcatcatc-aagtaatccta 10179357  T
Q  115 actctaaataattgagaactagctctcatgctcatctataaagaagatgagatggagtgagaactctaatgctactaacc 194  Q
    ||||||| | | | ||||||||| |||||||||||||||  ||||||||||||||||||||||||||| |||| ||||||    
T  10179356 actctaattcactaagaactagcactcatgctcatctatggagaagatgagatggagtgagaactctagtgctcctaacc 10179277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 286
Target Start/End: Complemental strand, 4225433 - 4225232
Alignment:
Q  85 tgagcttaaatcatcacctaaataatcctaactctaaataattgagaactagctctcatgctcatctataaagaagatgagatggagtgagaactctaat 184  Q
    ||||||| || ||||||||| |||||| |||||| || | | | |||  |||| ||||||||||||||   ||||||||||||| |||||||| |||| |    
T  4225433 tgagcttgaaacatcacctagataatcataactccaagtcactaagagttagcactcatgctcatctacggagaagatgagatgaagtgagaagtctagt 4225334  T
Q  185 gctactaaccatggttggacttggccactcaattcaagagtgtacaatttttgacccttggtactaacatgtggttgtccttttatagttcaaggccaac 284  Q
    | | |||||| | ||||||||||||| |||||||||  |||||| | |||  ||||| | | |||| ||  ||||||||||| |||||| ||||| ||||    
T  4225333 gttgctaaccctagttggacttggccgctcaattcacaagtgtaaagtttcggacccctagcactaccacatggttgtccttatatagtacaaggtcaac 4225234  T
Q  285 ca 286  Q
    ||    
T  4225233 ca 4225232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 187
Target Start/End: Original strand, 7354895 - 7355070
Alignment:
Q  12 atgaaaacatgaaaaactaaattgatagataaaatatagttaatagaagaatacaatccacaaaggaaggaggtgagcttaaatcatcacctaaataatc 111  Q
    |||||||||||||||  ||||||||||||||||||| |  |||||  |   |||||||||  |||||| || |||||||| || |||| | ||| |||||    
T  7354895 atgaaaacatgaaaagttaaattgatagataaaataaaactaataacattttacaatccaagaaggaaagatgtgagctttaagcatcgcgtaagtaatc 7354994  T
Q  112 ctaactctaaataattgagaactagctctcatgctcatctataaagaagatgagatggagtgagaactctaatgct 187  Q
    |||||| ||||| |   ||||||| | |||||||||||||||  |||| |||||||  ||||||||||||| ||||    
T  7354995 ctaactataaatcaccaagaactaacgctcatgctcatctatggagaaaatgagataaagtgagaactctagtgct 7355070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 96 - 182
Target Start/End: Complemental strand, 30500514 - 30500428
Alignment:
Q  96 catcacctaaataatcctaactctaaataattgagaactagctctcatgctcatctataaagaagatgagatggagtgagaactcta 182  Q
    ||||||| || ||||||||| ||||| | | | ||||||||| ||||||||||||||| | ||||||||||||||||||||||||||    
T  30500514 catcaccaaagtaatcctaaatctaattcactaagaactagcactcatgctcatctatgaggaagatgagatggagtgagaactcta 30500428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 175
Target Start/End: Original strand, 19941017 - 19941053
Alignment:
Q  139 ctcatgctcatctataaagaagatgagatggagtgag 175  Q
    |||||||||||||||  ||||||||||||||||||||    
T  19941017 ctcatgctcatctatggagaagatgagatggagtgag 19941053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 12 - 182
Target Start/End: Original strand, 19452541 - 19452711
Alignment:
Q  12 atgaaaacatgaaaaactaaattgatagataaaatatagttaatagaagaatacaatccacaaaggaaggaggtgagcttaaatcatcacctaaataatc 111  Q
    ||||||||||||||| | |||| |||||||||||||||||||||| |||| | |||||||  |||||| ||||||||||| || ||||||  || |||||    
T  19452541 atgaaaacatgaaaatcaaaatcgatagataaaatatagttaataaaagattgcaatccaacaaggaatgaggtgagcttgaagcatcactcaagtaatc 19452640  T
Q  112 ctaactctaaataattgagaactagctctcatgctcatctataaagaagatgagatggagtgagaactcta 182  Q
    |||||||||||| | | |||||| || ||||||||||||| |   ||||||| |||||||||| |||||||    
T  19452641 ctaactctaaatcactaagaactcgcactcatgctcatctctggcgaagatgggatggagtgataactcta 19452711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 12 - 182
Target Start/End: Complemental strand, 19528535 - 19528365
Alignment:
Q  12 atgaaaacatgaaaaactaaattgatagataaaatatagttaatagaagaatacaatccacaaaggaaggaggtgagcttaaatcatcacctaaataatc 111  Q
    ||||||||||||||| | |||| |||||||||||||||||||||| |||| | |||||||  |||||| ||||||||||| || ||||||  || |||||    
T  19528535 atgaaaacatgaaaatcaaaatcgatagataaaatatagttaataaaagattgcaatccaacaaggaatgaggtgagcttgaagcatcactcaagtaatc 19528436  T
Q  112 ctaactctaaataattgagaactagctctcatgctcatctataaagaagatgagatggagtgagaactcta 182  Q
    |||||||||||| | | |||||| || ||||||||||||| |   ||||||| |||||||||| |||||||    
T  19528435 ctaactctaaatcactaagaactcgcactcatgctcatctctggcgaagatgggatggagtgataactcta 19528365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 146
Target Start/End: Original strand, 30122385 - 30122520
Alignment:
Q  12 atgaaaacatgaaaaactaaattgatagataaaatatagttaatagaagaatacaatccacaaaggaaggaggtgagc-ttaaatcatcacctaaataat 110  Q
    |||||||||||||||||||| |||| | |||||||| |||||| | |||| |||||||||  |||||||||| ||||| ||  |  ||||||  ||||||    
T  30122385 atgaaaacatgaaaaactaatttgaaatataaaataaagttaacataagattacaatccaataaggaaggagatgagctttggagtatcacccgaataat 30122484  T
Q  111 cctaactctaaataattgagaactagctctcatgct 146  Q
    |||||||||||||  || |||||||| |||||||||    
T  30122485 cctaactctaaatccttaagaactagatctcatgct 30122520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 12 - 153
Target Start/End: Original strand, 13217878 - 13218019
Alignment:
Q  12 atgaaaacatgaaaaactaaattgatagataaaatatagttaatagaagaatacaatccacaaaggaaggaggtgagcttaaatcatcacctaaataatc 111  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||  | | | ||||| |  |||| | |||||||| || || |||||| ||| |||||    
T  13217878 atgaaaacatgaaaaactaaattgatggataaaatagagttaataacaaattgcaatctaacaagggaagaggtgagattgaagcatcacttaagtaatc 13217977  T
Q  112 ctaactctaaataattgagaactagctctcatgctcatctat 153  Q
    |||||||||||| | |  || ||||| | |||||||||||||    
T  13217978 ctaactctaaatcactaggagctagcacacatgctcatctat 13218019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 286
Target Start/End: Original strand, 30122524 - 30122620
Alignment:
Q  190 taaccatggttggacttggccactcaattcaagagtgtacaatttttgacccttggtactaacatgtggttgtccttttatagttcaaggccaacca 286  Q
    ||||||| | ||||||||||| || ||||||  | |||| ||  || ||||||||||||||| |||||||| |||||||||||| ||||||||||||    
T  30122524 taaccatagctggacttggccgcttaattcacaaatgtaaaagattggacccttggtactaaaatgtggttttccttttatagtacaaggccaacca 30122620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 282
Target Start/End: Complemental strand, 7635110 - 7635064
Alignment:
Q  236 tgacccttggtactaacatgtggttgtccttttatagttcaaggcca 282  Q
    |||||||||| ||| ||||||||||||||||||||||| ||||||||    
T  7635110 tgacccttggcactcacatgtggttgtccttttatagtacaaggcca 7635064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 286
Target Start/End: Complemental strand, 25233585 - 25233536
Alignment:
Q  237 gacccttggtactaacatgtggttgtccttttatagttcaaggccaacca 286  Q
    ||||||||| |||||||  |||||||||||||||||| ||||||||||||    
T  25233585 gacccttggcactaacacatggttgtccttttatagtacaaggccaacca 25233536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 37379023 - 37379110
Alignment:
Q  15 aaaacatgaaaaactaaattgatagataaaatatagttaatagaagaatacaatccacaaaggaaggaggtgagcttaaatcatcacc 102  Q
    |||||||| |||||||||||||||||| ||||| || || || |||| ||||||||   |||||| | |||||||| ||| |||||||    
T  37379023 aaaacatggaaaactaaattgatagattaaatagagctagtacaagattacaatccttgaaggaaagtggtgagctaaaagcatcacc 37379110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 282
Target Start/End: Original strand, 13218105 - 13218150
Alignment:
Q  237 gacccttggtactaacatgtggttgtccttttatagttcaaggcca 282  Q
    ||||||||| ||||| |||||||||||||||| |||| ||||||||    
T  13218105 gacccttggcactaaaatgtggttgtccttttgtagtacaaggcca 13218150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 113 - 286
Target Start/End: Complemental strand, 862497 - 862324
Alignment:
Q  113 taactctaaataattgagaactagctctcatgctcatctataaagaagatgagatggagtgagaactctaatgctactaaccatggttggacttggccac 212  Q
    ||||||||||| | | ||||||  | ||||||||||||||| |||||||||||||||||||| ||||||| || | |||||| | | |||||||  ||||    
T  862497 taactctaaatcactaagaactgacactcatgctcatctatgaagaagatgagatggagtgaaaactctagtgatgctaaccctagctggacttccccac 862398  T
Q  213 tcaattcaagagtgtacaatttttgacccttggtactaacatgtggttgtccttttatagttcaaggccaacca 286  Q
    ||||||||  |||||| |||||  |||| |||| |||||  ||||||||||||||| | || ||||| ||||||    
T  862397 tcaattcacaagtgtaaaatttcggacctttggcactaatgtgtggttgtccttttgtggtacaaggtcaacca 862324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 185
Target Start/End: Original strand, 48559107 - 48559280
Alignment:
Q  12 atgaaaacatgaaaaactaaattgatagataaaatatagttaatagaagaatacaatccacaaaggaaggaggtgagcttaaatcatcacctaaataatc 111  Q
    |||||||||||||||  ||||||||||||||||||| ||  | ||  | | ||||||  |  || ||| || |||||||| || ||||| | ||||||||    
T  48559107 atgaaaacatgaaaagttaaattgatagataaaatagagccactaacatattacaatttaagaatgaaagatgtgagcttgaagcatcatccaaataatc 48559206  T
Q  112 ctaactctaaataattgagaactagctctcatgctcatctataaagaagatgagatggagtgagaactctaatg 185  Q
     |||||||||||  |||| ||||||| |||||||| ||||||  | || |||||||  | ||||||||||||||    
T  48559207 ttaactctaaatcgttgaaaactagcactcatgcttatctatggaaaatatgagattaattgagaactctaatg 48559280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 4287889 - 4287925
Alignment:
Q  147 catctataaagaagatgagatggagtgagaactctaa 183  Q
    |||||||| ||||||||||||||||||||||||||||    
T  4287889 catctatatagaagatgagatggagtgagaactctaa 4287925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 182
Target Start/End: Original strand, 32090626 - 32090710
Alignment:
Q  98 tcacctaaataatcctaactctaaataattgagaactagctctcatgctcatctataaagaagatgagatggagtgagaactcta 182  Q
    |||||||| ||||||||||||||| | |   ||||||||| || ||||||||| ||  || ||||||||| ||||||||||||||    
T  32090626 tcacctaagtaatcctaactctaactcaaaaagaactagcacttatgctcatcgatggaggagatgagattgagtgagaactcta 32090710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 179
Target Start/End: Original strand, 7720872 - 7720922
Alignment:
Q  129 agaactagctctcatgctcatctataaagaagatgagatggagtgagaact 179  Q
    ||||||||| |||||||| |||||| || ||||||||||||||||| ||||    
T  7720872 agaactagcactcatgctaatctatgaaaaagatgagatggagtgaaaact 7720922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 12 - 194
Target Start/End: Complemental strand, 17469021 - 17468840
Alignment:
Q  12 atgaaaacatgaaaaactaaattgatagataaaatatagttaatagaagaatacaatccacaaaggaaggaggtgagcttaaatcatcacctaaataatc 111  Q
    ||||||||||||||||||||||| ||| |||||||| || || ||  ||| |||||||||  ||||||  |||||||||| ||  || ||| |||||||     
T  17469021 atgaaaacatgaaaaactaaattaatatataaaatagagctagtaatagattacaatccaagaaggaaataggtgagcttgaagaataaccaaaataata 17468922  T
Q  112 ctaactctaaataattgagaactagctctcatgctcatctataaagaagatgagatggagtgagaactctaatgctactaacc 194  Q
    |||||| ||||| | | |||| |||| | ||||  |||||||  |||||| | ||||||| |||||||||| |||||||||||    
T  17468921 ctaactttaaatcactaagaa-tagcacccatgaccatctatggagaagaagggatggagcgagaactctagtgctactaacc 17468840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 12 - 182
Target Start/End: Complemental strand, 23361590 - 23361421
Alignment:
Q  12 atgaaaacatgaaaaactaaattgatagataaaatatagttaatagaagaatacaatccacaaaggaaggaggtgagcttaaatcatcacctaaataatc 111  Q
    ||||||||||||||| |||||||||||||| |||||||| || || |||| ||||||||   |||||  | |||||||| ||| ||||||| |  |||||    
T  23361590 atgaaaacatgaaaa-ctaaattgatagatgaaatatagctagtacaagattacaatccttgaaggagagtggtgagctgaaaacatcacc-acgtaatc 23361493  T
Q  112 ctaactctaaataattgagaac-tagctctcatgctcatctataaagaagatgagatggagtgagaactcta 182  Q
    | |||||||| | | | | ||  |||| |||||||||||||||  |||| ||||||||||||||||||||||    
T  23361492 caaactctaattcactaaaaaaatagccctcatgctcatctatggagaaaatgagatggagtgagaactcta 23361421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 16511223 - 16511191
Alignment:
Q  12 atgaaaacatgaaaaactaaattgatagataaa 44  Q
    ||||||||||||||| |||||||||||||||||    
T  16511223 atgaaaacatgaaaagctaaattgatagataaa 16511191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 182
Target Start/End: Complemental strand, 119686 - 119573
Alignment:
Q  68 tccacaaaggaaggaggtgagcttaaatcatcacctaaataatcctaactctaaataattgagaactagctctcatgctcatctataaagaagatgagat 167  Q
    |||||||| ||| ||| |||||||||  ||||||  || |||||  |||||||| | | | |||||||||  | |||||||| ||| | |||||||||||    
T  119686 tccacaaaagaaagagttgagcttaag-catcacaaaattaatctgaactctaattcactaagaactagcattaatgctcatttatgaggaagatgagat 119588  T
Q  168 ggagtgagaactcta 182  Q
    |||||||||||||||    
T  119587 ggagtgagaactcta 119573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University