View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11553_low_10 (Length: 291)

Name: NF11553_low_10
Description: NF11553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11553_low_10
NF11553_low_10
[»] chr1 (3 HSPs)
chr1 (92-276)||(15243692-15243876)
chr1 (92-168)||(47900817-47900893)
chr1 (92-153)||(19705397-19705458)
[»] chr7 (4 HSPs)
chr7 (73-163)||(26573329-26573419)
chr7 (92-151)||(2478677-2478736)
chr7 (93-163)||(16803057-16803127)
chr7 (93-145)||(23103086-23103138)
[»] chr5 (2 HSPs)
chr5 (94-149)||(17468371-17468426)
chr5 (93-121)||(23360907-23360935)
[»] chr3 (2 HSPs)
chr3 (92-147)||(861889-861944)
chr3 (91-145)||(4288330-4288384)
[»] chr2 (1 HSPs)
chr2 (92-163)||(27467936-27468007)
[»] chr4 (4 HSPs)
chr4 (92-163)||(4224776-4224847)
chr4 (92-145)||(19943582-19943635)
chr4 (94-155)||(10178814-10178875)
chr4 (92-124)||(7355478-7355510)


Alignment Details
Target: chr1 (Bit Score: 165; Significance: 3e-88; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 92 - 276
Target Start/End: Complemental strand, 15243876 - 15243692
Alignment:
Q  92 atgcattcactcaatttctcgttcattatgggggataagagtaacatgataacctacaaatttgttggttattaattttcatttggggtgcatgaaatag 191  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  15243876 atgcattcactcaatttcttgttcattatgggggataagtgtaacatgataacctacaaatttgttggttattaattttcatatggggtgcatgaaatag 15243777  T
Q  192 gtactcaaaataactgtccggtatcctttgttcttaggagaaggtggaaattgttgaccgccattaacgctttctgaataacttg 276  Q
    | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15243776 gcactcaaaataactgtccggtaacctttgttcttaggagaaggtggaaattgttgaccgccattaacgctttctgaataacttg 15243692  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 92 - 168
Target Start/End: Original strand, 47900817 - 47900893
Alignment:
Q  92 atgcattcactcaatttctcgttcattatgggggataagagtaacatgataacctacaaatttgttggttattaatt 168  Q
    ||||||||||||| ||||||||||||||| ||||||||| | ||| ||||||||||||||||||| |||||| ||||    
T  47900817 atgcattcactcattttctcgttcattataggggataagtgcaacgtgataacctacaaatttgtcggttatcaatt 47900893  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 153
Target Start/End: Complemental strand, 19705458 - 19705397
Alignment:
Q  92 atgcattcactcaatttctcgttcattatgggggataagagtaacatgataacctacaaatt 153  Q
    |||||| ||||||||||||| |   |||||||||||||| | || |||||||||||||||||    
T  19705458 atgcatacactcaatttctcataggttatgggggataagtgcaaaatgataacctacaaatt 19705397  T

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Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 73 - 163
Target Start/End: Original strand, 26573329 - 26573419
Alignment:
Q  73 ctaaatagtcactgattaaatgcattcactcaatttctcgttcattatgggggataagagtaacatgataacctacaaatttgttggttat 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||  | ||| |||||||||||||||||| |||||||    
T  26573329 ctaaatagtcactgattaaatgcattcactcaatttctcgttcattttggaggataattgcaacgtgataacctacaaatttgctggttat 26573419  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 151
Target Start/End: Original strand, 2478677 - 2478736
Alignment:
Q  92 atgcattcactcaatttctcgttcattatgggggataagagtaacatgataacctacaaa 151  Q
    ||||||||||| ||||||| ||||||||||||||||||| | ||||||||||||| ||||    
T  2478677 atgcattcacttaatttcttgttcattatgggggataagtgcaacatgataaccttcaaa 2478736  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 163
Target Start/End: Complemental strand, 16803127 - 16803057
Alignment:
Q  93 tgcattcactcaatttctcgttcattatgggggataagagtaacatgataacctacaaatttgttggttat 163  Q
    |||||||||||||||| ||||||||||||| ||||||| | ||| |||||||| || | ||| ||||||||    
T  16803127 tgcattcactcaatttatcgttcattatggaggataagtgcaacgtgataaccaactatttttttggttat 16803057  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 145
Target Start/End: Complemental strand, 23103138 - 23103086
Alignment:
Q  93 tgcattcactcaatttctcgttcattatgggggataagagtaacatgataacc 145  Q
    |||||||||||| ||||| ||| ||||||||||||||| | ||||||||||||    
T  23103138 tgcattcactcattttcttgttaattatgggggataagtgcaacatgataacc 23103086  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 149
Target Start/End: Complemental strand, 17468426 - 17468371
Alignment:
Q  94 gcattcactcaatttctcgttcattatgggggataagagtaacatgataacctaca 149  Q
    |||||||||||||||||  |||||||||||||||||| |||||||||||| |||||    
T  17468426 gcattcactcaatttcttattcattatgggggataagtgtaacatgataaactaca 17468371  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 121
Target Start/End: Complemental strand, 23360935 - 23360907
Alignment:
Q  93 tgcattcactcaatttctcgttcattatg 121  Q
    |||||||||||||||||||||||||||||    
T  23360935 tgcattcactcaatttctcgttcattatg 23360907  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 147
Target Start/End: Complemental strand, 861944 - 861889
Alignment:
Q  92 atgcattcactcaatttctcgttcattatgggggataagagtaacatgataaccta 147  Q
    ||||||||| |||||||||||||||||||||| |||||| | ||||||||||||||    
T  861944 atgcattcattcaatttctcgttcattatgggagataagtgcaacatgataaccta 861889  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 145
Target Start/End: Original strand, 4288330 - 4288384
Alignment:
Q  91 aatgcattcactcaatttctcgttcattatgggggataagagtaacatgataacc 145  Q
    |||||||||||||| ||||| |||||||||||| |||||| | ||| ||||||||    
T  4288330 aatgcattcactcagtttcttgttcattatgggagataagtgcaacgtgataacc 4288384  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 163
Target Start/End: Original strand, 27467936 - 27468007
Alignment:
Q  92 atgcattcactcaatttctcgttcattatgggggataagagtaacatgataacctacaaatttgttggttat 163  Q
    ||||||||||||||||||||||||||||| | | ||||| |||||||||||| ||| ||||||  |||||||    
T  27467936 atgcattcactcaatttctcgttcattatagcgtataagtgtaacatgataagctataaattttctggttat 27468007  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 92 - 163
Target Start/End: Complemental strand, 4224847 - 4224776
Alignment:
Q  92 atgcattcactcaatttctcgttcattatgggggataagagtaacatgataacctacaaatttgttggttat 163  Q
    ||||||||||||| ||||| |||||||||||  ||| || | |||||||||| |||||||||||| ||||||    
T  4224847 atgcattcactcagtttcttgttcattatggatgatgagtgcaacatgataatctacaaatttgtcggttat 4224776  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 145
Target Start/End: Original strand, 19943582 - 19943635
Alignment:
Q  92 atgcattcactcaatttctcgttcattatgggggataagagtaacatgataacc 145  Q
    ||||||| |||||||| ||||||||||||||| |||||| | ||||||||||||    
T  19943582 atgcatttactcaattcctcgttcattatgggagataagtgcaacatgataacc 19943635  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 155
Target Start/End: Complemental strand, 10178875 - 10178814
Alignment:
Q  94 gcattcactcaatttctcgttcattatgggggataagagtaacatgataacctacaaatttg 155  Q
    ||||||||||||||| ||||||||| ||||||||||| | | || ||||||| |||| ||||    
T  10178875 gcattcactcaatttatcgttcattttgggggataagtgcagcaggataaccaacaattttg 10178814  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 124
Target Start/End: Original strand, 7355478 - 7355510
Alignment:
Q  92 atgcattcactcaatttctcgttcattatgggg 124  Q
    ||||||||||||||||||||||||||| |||||    
T  7355478 atgcattcactcaatttctcgttcattgtgggg 7355510  T

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