View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11553_low_12 (Length: 273)

Name: NF11553_low_12
Description: NF11553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11553_low_12
NF11553_low_12
[»] scaffold1469 (1 HSPs)
scaffold1469 (1-273)||(1143-1416)
[»] scaffold0131 (1 HSPs)
scaffold0131 (5-273)||(789-1058)
[»] chr5 (17 HSPs)
chr5 (5-273)||(28889331-28889601)
chr5 (5-273)||(28896035-28896305)
chr5 (5-273)||(28909283-28909553)
chr5 (5-273)||(28924861-28925131)
chr5 (5-273)||(28945678-28945948)
chr5 (1-273)||(20820006-20820277)
chr5 (1-273)||(20827106-20827377)
chr5 (59-273)||(20772815-20773030)
chr5 (59-273)||(20781590-20781805)
chr5 (5-188)||(28931061-28931245)
chr5 (95-272)||(24929923-24930102)
chr5 (119-273)||(19236805-19236961)
chr5 (98-273)||(22461039-22461217)
chr5 (98-273)||(22467663-22467841)
chr5 (211-266)||(18407944-18408000)
chr5 (214-273)||(34830086-34830145)
chr5 (212-267)||(42961566-42961622)
[»] chr7 (10 HSPs)
chr7 (60-273)||(2465208-2465422)
chr7 (60-273)||(3857359-3857574)
chr7 (1-273)||(16090860-16091136)
chr7 (1-273)||(29181103-29181379)
chr7 (1-273)||(20906455-20906729)
chr7 (168-273)||(2971209-2971315)
chr7 (1-173)||(2966750-2966925)
chr7 (215-273)||(31155396-31155455)
chr7 (213-273)||(14319623-14319684)
chr7 (212-272)||(14567203-14567264)
[»] scaffold0029 (2 HSPs)
scaffold0029 (60-273)||(91196-91412)
scaffold0029 (60-273)||(96922-97138)
[»] chr6 (9 HSPs)
chr6 (85-273)||(9099065-9099255)
chr6 (60-273)||(21364476-21364688)
chr6 (60-273)||(23968458-23968670)
chr6 (37-273)||(20007940-20008181)
chr6 (95-138)||(29097747-29097790)
chr6 (215-273)||(15458492-15458551)
chr6 (215-273)||(15465087-15465146)
chr6 (215-273)||(11288662-11288721)
chr6 (213-273)||(31252423-31252484)
[»] chr3 (12 HSPs)
chr3 (85-273)||(19235062-19235252)
chr3 (1-273)||(12033438-12033714)
chr3 (1-273)||(14865631-14865907)
chr3 (98-273)||(17131615-17131793)
chr3 (211-272)||(23370500-23370562)
chr3 (213-273)||(51301589-51301650)
chr3 (213-272)||(13302235-13302295)
chr3 (213-272)||(13323782-13323842)
chr3 (215-273)||(10389437-10389496)
chr3 (215-273)||(10414526-10414585)
chr3 (215-273)||(10421196-10421255)
chr3 (213-272)||(13312891-13312951)
[»] scaffold0053 (1 HSPs)
scaffold0053 (1-273)||(79484-79760)
[»] chr4 (2 HSPs)
chr4 (1-273)||(16146824-16147100)
chr4 (213-273)||(27906266-27906327)
[»] chr1 (4 HSPs)
chr1 (1-273)||(21710604-21710879)
chr1 (98-273)||(20851126-20851304)
chr1 (98-273)||(20857753-20857931)
chr1 (98-273)||(21706159-21706337)
[»] scaffold0384 (1 HSPs)
scaffold0384 (85-272)||(16059-16247)
[»] scaffold0072 (1 HSPs)
scaffold0072 (1-273)||(49964-50241)
[»] chr8 (4 HSPs)
chr8 (98-273)||(24320664-24320842)
chr8 (211-272)||(44477621-44477683)
chr8 (211-272)||(44492779-44492841)
chr8 (212-267)||(27940851-27940907)
[»] chr2 (4 HSPs)
chr2 (37-273)||(25180923-25181163)
chr2 (98-271)||(10460-10636)
chr2 (213-273)||(26885183-26885243)
chr2 (213-273)||(27207713-27207774)
[»] scaffold0348 (1 HSPs)
scaffold0348 (98-272)||(9219-9396)
[»] scaffold0023 (1 HSPs)
scaffold0023 (1-273)||(135225-135499)
[»] scaffold1318 (1 HSPs)
scaffold1318 (119-273)||(1906-2062)
[»] scaffold0099 (1 HSPs)
scaffold0099 (95-265)||(12836-13019)
[»] scaffold0609 (1 HSPs)
scaffold0609 (213-273)||(5851-5912)
[»] scaffold0249 (1 HSPs)
scaffold0249 (215-273)||(13888-13947)
[»] scaffold0183 (1 HSPs)
scaffold0183 (215-273)||(6-65)
[»] scaffold0553 (1 HSPs)
scaffold0553 (211-272)||(10190-10252)
[»] scaffold0544 (1 HSPs)
scaffold0544 (211-272)||(1520-1582)
[»] scaffold0127 (1 HSPs)
scaffold0127 (213-272)||(10239-10299)
[»] scaffold0026 (1 HSPs)
scaffold0026 (211-273)||(111684-111747)
[»] scaffold0815 (1 HSPs)
scaffold0815 (152-189)||(1388-1425)
[»] scaffold0261 (1 HSPs)
scaffold0261 (213-273)||(23563-23624)


Alignment Details
Target: scaffold1469 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: scaffold1469
Description:

Target: scaffold1469; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 1143 - 1416
Alignment:
Q  1 aattcagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttcatccaattatgatctacaatagcaatacagactaggaa 100  Q
    ||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||| |||| | ||||||||| ||||||    
T  1143 aattcagcccaatcaagcattcatacagaaacttccaaattcacacataacatgctattttcatccaattatgatcaacaacaacaatacagattaggaa 1242  T
Q  101 atcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaatcatcattaaccctaattttcccaattttaccataagaaca 200  Q
    ||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||    
T  1243 atcatactaatcatcaattataacattgtaaacctgaatcttacgcattttcttcaaaatcatcattagacctaattttcccaattttaccttaagaaca 1342  T
Q  201 gttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattgc 273  Q
    ||||||||  | |||||||||||| ||||||||| || ||||| |||   ||||||||||||||||||||||||    
T  1343 gttaaattgtttaattttcagaaagcatatattaacactattgaaaggaaatcccacccttaccttagaattgc 1416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 5 - 273
Target Start/End: Original strand, 789 - 1058
Alignment:
Q  5 cagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttcatccaattatgatctacaatagcaatacagactaggaaa-tc 103  Q
    ||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||| | || || ||| | ||||| ||    
T  789 cagcccaatcaagcattaatacagaaaatcccaaattcatacataacatgctattttcatccaattatgatcaacaacaacattataga-tcggaaactc 887  T
Q  104 atactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaatcatcattaaccctaattttcccaattttaccataagaacagtt 203  Q
     |||||||||||||| ||||| |||||||||| |||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  888 ttactaatcatcaaacacaactttataaacctaaatcttacacattttcttcaaaatcgccattaaccctaattttcccaattttaccataagaacagtt 987  T
Q  204 aaattactcaattttcagaaatcatatattatcattattga-agatgatcccacccttaccttagaattgc 273  Q
    ||||| || ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  988 aaattgcttaattttcagaaatcatatattatcactattgagagatgatcccacccttaccttagaattgc 1058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 167; Significance: 2e-89; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 5 - 273
Target Start/End: Complemental strand, 28889601 - 28889331
Alignment:
Q  5 cagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttcatccaattatgatctacaatagcaatacagactaggaaatca 104  Q
    ||||||||||| ||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||| |||| ||| ||||||| ||||||||||    
T  28889601 cagcccaatcaggcattcatacagaaaatcccaaattcatacataacatgctcttttcatccaattatgatcaacaacagcgatacagattaggaaatca 28889502  T
Q  105 tactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaatcatcattaaccctaattttcccaa-ttttaccataagaacagtt 203  Q
    |||||||||| ||||||||| | |||||||||||| |||||||||||||||||||||||||| || |||||||||||||| ||||||| |||||||| ||    
T  28889501 tactaatcattaaatacaacgtcataaacctgaattttacgcattttcttcaaaatcatcatcaaacctaattttcccaatttttaccttaagaacaatt 28889402  T
Q  204 aaattactcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattgc 273  Q
    ||||   | ||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||    
T  28889401 aaatagtttaattttcagaaatcatataatatcactattgaaagatgatcccacccttaccttagaattgc 28889331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 5 - 273
Target Start/End: Complemental strand, 28896305 - 28896035
Alignment:
Q  5 cagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttcatccaattatgatctacaatagcaatacagactaggaaatca 104  Q
    ||||||||||| ||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||| |||| ||| ||||||| ||||||||||    
T  28896305 cagcccaatcaggcattcatacagaaaatcccaaattcatacataacatgctcttttcatccaattatgatcaacaacagcgatacagattaggaaatca 28896206  T
Q  105 tactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaatcatcattaaccctaattttcccaa-ttttaccataagaacagtt 203  Q
    |||||||||| ||||||||| | |||||||||||| |||||||||||||||||||||||||| || |||||||||||||| ||||||| |||||||| ||    
T  28896205 tactaatcattaaatacaacgtcataaacctgaattttacgcattttcttcaaaatcatcatcaaacctaattttcccaatttttaccttaagaacaatt 28896106  T
Q  204 aaattactcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattgc 273  Q
    ||||   | ||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||    
T  28896105 aaatagtttaattttcagaaatcatataatatcactattgaaagatgatcccacccttaccttagaattgc 28896035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 5 - 273
Target Start/End: Complemental strand, 28909553 - 28909283
Alignment:
Q  5 cagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttcatccaattatgatctacaatagcaatacagactaggaaatca 104  Q
    ||||||||||| ||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||| |||| ||| ||||||| ||||||||||    
T  28909553 cagcccaatcaggcattcatacagaaaatcccaaattcatacataacatgctcttttcatccaattatgatcaacaacagcgatacagattaggaaatca 28909454  T
Q  105 tactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaatcatcattaaccctaattttcccaa-ttttaccataagaacagtt 203  Q
    |||||||||| ||||||||| | |||||||||||| |||||||||||||||||||||||||| || |||||||||||||| ||||||| |||||||| ||    
T  28909453 tactaatcattaaatacaacgtcataaacctgaattttacgcattttcttcaaaatcatcatcaaacctaattttcccaatttttaccttaagaacaatt 28909354  T
Q  204 aaattactcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattgc 273  Q
    ||||   | ||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||    
T  28909353 aaatagtttaattttcagaaatcatataatatcactattgaaagatgatcccacccttaccttagaattgc 28909283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 5 - 273
Target Start/End: Complemental strand, 28925131 - 28924861
Alignment:
Q  5 cagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttcatccaattatgatctacaatagcaatacagactaggaaatca 104  Q
    ||||||||||| ||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||| |||| ||| ||||||| ||||||||||    
T  28925131 cagcccaatcaggcattcatacagaaaatcccaaattcatacataacatgctcttttcatccaattatgatcaacaacagcgatacagattaggaaatca 28925032  T
Q  105 tactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaatcatcattaaccctaattttcccaa-ttttaccataagaacagtt 203  Q
    |||||||||| ||||||||| | |||||||||||| |||||||||||||||||||||||||| || |||||||||||||| ||||||| |||||||| ||    
T  28925031 tactaatcattaaatacaacgtcataaacctgaattttacgcattttcttcaaaatcatcatcaaacctaattttcccaatttttaccttaagaacaatt 28924932  T
Q  204 aaattactcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattgc 273  Q
    ||||   | ||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||    
T  28924931 aaatagtttaattttcagaaatcatataatatcactattgaaagatgatcccacccttaccttagaattgc 28924861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 5 - 273
Target Start/End: Complemental strand, 28945948 - 28945678
Alignment:
Q  5 cagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttcatccaattatgatctacaatagcaatacagactaggaaatca 104  Q
    ||||||||||| ||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||| |||| ||| ||||||| ||||||||||    
T  28945948 cagcccaatcaggcattcatacagaaaatcccaaattcatacataacatgctcttttcatccaattatgatcaacaacagcgatacagattaggaaatca 28945849  T
Q  105 tactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaatcatcattaaccctaattttcccaa-ttttaccataagaacagtt 203  Q
    |||||||||| ||||||||| | |||||||||||| |||||||||||||||||||||||||| || |||||||||||||| ||||||| |||||||| ||    
T  28945848 tactaatcattaaatacaacgtcataaacctgaattttacgcattttcttcaaaatcatcatcaaacctaattttcccaatttttaccttaagaacaatt 28945749  T
Q  204 aaattactcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattgc 273  Q
    ||||   | ||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||    
T  28945748 aaatagtttaattttcagaaatcatataatatcactattgaaagatgatcccacccttaccttagaattgc 28945678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 20820006 - 20820277
Alignment:
Q  1 aattcagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttcatccaattatgatctacaatagcaatacagactaggaa 100  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| || | | ||||||  | ||||      
T  20820006 aatttagcccaatcaagcattcatacagaaaattccaaattcatacataacatgctatttgcatccaattatgatcaactacaacaatactaattagg-g 20820104  T
Q  101 atcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaatcatcattaaccctaattttcccaattttaccataagaaca 200  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||     
T  20820105 atcatactcatcatcaaatacaacattataaacctgaatcttatgcattctcttcaaaatcatcattaaccctaatttt-ccaattttaccttaagaacg 20820203  T
Q  201 gttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattgc 273  Q
    ||| ||||||| |||  |||||||| |||||||| || ||||| ||||||||||||||||||||||||||||||    
T  20820204 gttgaattacttaatcatcagaaattatatattaacactattgaaagatgatcccacccttaccttagaattgc 20820277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 20827106 - 20827377
Alignment:
Q  1 aattcagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttcatccaattatgatctacaatagcaatacagactaggaa 100  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| || | | ||||||  | ||||      
T  20827106 aatttagcccaatcaagcattcatacagaaaattccaaattcatacataacatgctatttgcatccaattatgatcaactacaacaatactaattagg-g 20827204  T
Q  101 atcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaatcatcattaaccctaattttcccaattttaccataagaaca 200  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||     
T  20827205 atcatactcatcatcaaatacaacattataaacctgaatcttatgcattctcttcaaaatcatcattaaccctaatttt-ccaattttaccttaagaacg 20827303  T
Q  201 gttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattgc 273  Q
    ||| ||||||| |||  |||||||| |||||||| || ||||| ||||||||||||||||||||||||||||||    
T  20827304 gttgaattacttaatcatcagaaattatatattaacactattgaaagatgatcccacccttaccttagaattgc 20827377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 59 - 273
Target Start/End: Original strand, 20772815 - 20773030
Alignment:
Q  59 tttcatccaattatgatctacaatagcaatacagactaggaaatcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaa 158  Q
    |||||||||||||||||| |||  | ||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  20772815 tttcatccaattatgatcaacatcaacaatatagagtaggaaatcatactaatcatcaaatacaacattataaacctgattcttacacattttcttcaaa 20772914  T
Q  159 atcatcattaaccctaattttcccaattttaccataagaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccacc 257  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||  | ||||||||||||||||||||||| | ||||| ||||| ||||||||    
T  20772915 atcatcattaaccctaaatttcccaattttaccttaagaacagttaaattgattaattttcagaaatcatatattataactattgaaagataatcccacc 20773014  T
Q  258 cttaccttagaattgc 273  Q
    ||||||||||||||||    
T  20773015 cttaccttagaattgc 20773030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 59 - 273
Target Start/End: Original strand, 20781590 - 20781805
Alignment:
Q  59 tttcatccaattatgatctacaatagcaatacagactaggaaatcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaa 158  Q
    |||||||||||||||||| |||  | ||||| ||| |||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  20781590 tttcatccaattatgatcaacatcaacaatatagagtaggaaatcataataatcatcaaatacaacattataaacctgattcttacacattttcttcaaa 20781689  T
Q  159 atcatcattaaccctaattttcccaattttaccataagaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccacc 257  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||  | ||||||||||||||||||||||| ||||||| ||||| ||||||||    
T  20781690 atcatcattaaccctaaatttcccaattttaccttaagaacagttaaattgattaattttcagaaatcatatattataattattgaaagataatcccacc 20781789  T
Q  258 cttaccttagaattgc 273  Q
    ||||||||||||||||    
T  20781790 cttaccttagaattgc 20781805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 5 - 188
Target Start/End: Complemental strand, 28931245 - 28931061
Alignment:
Q  5 cagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttcatccaattatgatctacaatagcaatacagactaggaaatca 104  Q
    ||||||||||| ||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||| |||| ||| ||||||| ||||||||||    
T  28931245 cagcccaatcaggcattcatacagaaaatcccaaattcatacataacatgctcttttcatccaattatgatcaacaacagcgatacagattaggaaatca 28931146  T
Q  105 tactaatcatcaaatacaacattataaacctgaatcttacgcattttcttc-aaaatcatcattaaccctaattttcccaatttt 188  Q
    |||||||||| ||||||||| | |||||||||||| |||| |||||||||| |||| |||||| || ||||||||||||||||||    
T  28931145 tactaatcattaaatacaacgtcataaacctgaattttacccattttcttcaaaaaccatcatcaaacctaattttcccaatttt 28931061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 95 - 272
Target Start/End: Complemental strand, 24930102 - 24929923
Alignment:
Q  95 taggaaatcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaatcatcattaaccctaattttcccaattttaccata 194  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||| |||||||||||||||||| ||||||||||||||| ||    
T  24930102 taggaaatcatactaatcatcaaatacaacattataaacctgattcttacacatttccttcagaatcatcattaaccctaaatttcccaattttacctta 24930003  T
Q  195 agaacagttaaatt-actcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattg 272  Q
    |||||||||||||| | | | |||| |||||||||||||||  | ||||| ||||| |||||||||||||||||||||||    
T  24930002 agaacagttaaattgattaattttttagaaatcatatattagaactattgaaagataatcccacccttaccttagaattg 24929923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 119 - 273
Target Start/End: Original strand, 19236805 - 19236961
Alignment:
Q  119 tacaacattataaacctgaatcttacgcattttctt-caaaatcatcattaaccctaattttcccaattttaccataagaacagttaaattactcaattt 217  Q
    ||||||| |||||||||||  ||||  | ||||||| |||||||||| |||||||||| ||||||||||||||| ||||||||||| ||||  | |||||    
T  19236805 tacaacaatataaacctgatccttataccttttctttcaaaatcatccttaaccctaaatttcccaattttaccttaagaacagttcaattgattaattt 19236904  T
Q  218 tcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattgc 273  Q
    |||||||| ||||||||| | ||||| ||||| ||||||||||||||||||||||||    
T  19236905 tcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgc 19236961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 98 - 273
Target Start/End: Original strand, 22461039 - 22461217
Alignment:
Q  98 gaaatcatactaatcatcaaa-tacaacattataaacctgaatcttacgcattttcttcaaaatcatcattaaccctaattttcccaattttaccataag 196  Q
    |||| |||||||| ||||||| ||| ||| |||||||||||  ||||  | |||||||  |||||||| |||||||||| ||||||||||||||| ||||    
T  22461039 gaaaacatactaaacatcaaagtacgacaatataaacctgatccttataccttttctttcaaatcatccttaaccctaaatttcccaattttaccttaag 22461138  T
Q  197 aacagttaaatt-actcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattgc 273  Q
    ||||||| |||| | | | ||||||||||| ||||||||| | ||||| ||||| ||||||||||||||||||||||||    
T  22461139 aacagttcaattgattaatttttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgc 22461217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 98 - 273
Target Start/End: Original strand, 22467663 - 22467841
Alignment:
Q  98 gaaatcatactaatcatcaaa-tacaacattataaacctgaatcttacgcattttcttcaaaatcatcattaaccctaattttcccaattttaccataag 196  Q
    |||| |||||||| ||||||| ||| ||| |||||||||||  ||||  | |||||||  |||||||| |||||||||| ||||||||||||||| ||||    
T  22467663 gaaaacatactaaacatcaaagtacgacaatataaacctgatccttataccttttctttcaaatcatccttaaccctaaatttcccaattttaccttaag 22467762  T
Q  197 aacagttaaatt-actcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattgc 273  Q
    ||||||| |||| | | | ||||||||||| ||||||||| | ||||| ||||| ||||||||||||||||||||||||    
T  22467763 aacagttcaattgattaatttttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgc 22467841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 18408000 - 18407944
Alignment:
Q  211 tcaattttcagaaatcatatattatcattattga-agatgatcccacccttacctta 266  Q
    ||||||||||||||| ||||||||| |||||||| ||||  || |||||||||||||    
T  18408000 tcaattttcagaaattatatattatgattattgagagatagtctcacccttacctta 18407944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 273
Target Start/End: Original strand, 34830086 - 34830145
Alignment:
Q  214 attttcagaaatcatatattatcattattgaa-gatgatcccacccttaccttagaattgc 273  Q
    |||||||||||| ||| ||||  ||||||||| ||| ||||||||||||||||||||||||    
T  34830086 attttcagaaattatacattaa-attattgaaagataatcccacccttaccttagaattgc 34830145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 267
Target Start/End: Original strand, 42961566 - 42961622
Alignment:
Q  212 caattttcagaaatcatatattatcattattgaagatgatcc-cacccttaccttag 267  Q
    |||||||||||||||||||||||| || ||||||| | | || ||||||||||||||    
T  42961566 caattttcagaaatcatatattataatcattgaaggttagcctcacccttaccttag 42961622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 60 - 273
Target Start/End: Original strand, 2465208 - 2465422
Alignment:
Q  60 ttcatccaattatgatctacaatagcaatacagactaggaaatcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaa 159  Q
    ||||||||||||||||| |||  | ||||||||| |||||||||||| ||||||||||||| |||||||||||||| |||||||| ||||||||||||||    
T  2465208 ttcatccaattatgatcaacatcaacaatacagagtaggaaatcatattaatcatcaaatataacattataaacctaaatcttacacattttcttcaaaa 2465307  T
Q  160 tcatcattaaccctaattttcccaattttaccataagaacagttaaattactcaattttcagaaatcatatattatcattattgaa-gatgatcccaccc 258  Q
    |   ||||||||||||||| || | ||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||    
T  2465308 ttgccattaaccctaatttcccaatttttaccataaaaacagttaaattgcttaattttcagaaatcatatattatcattattgaaggatgatcccaccc 2465407  T
Q  259 ttaccttagaattgc 273  Q
    |||||||||||||||    
T  2465408 ttaccttagaattgc 2465422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 60 - 273
Target Start/End: Complemental strand, 3857574 - 3857359
Alignment:
Q  60 ttcatccaattatgatctacaatagcaatacagactaggaaatcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaa 159  Q
    ||||||||||||| ||| |||  | ||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  3857574 ttcatccaattataatcaacatcaacaatacagagtaggaaatcatattaatcatcaaatacaacattataaacctaaatcttacacattttcttcaaaa 3857475  T
Q  160 tcatcattaaccctaattttcccaatttt---accataagaacagttaaattactcaattttcagaaatcatatattatcattattgaagatgatcccac 256  Q
    |   ||||||||||||||| |||||||||   ||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  3857474 ttgccattaaccctaattt-cccaatttttttaccataaaaacagttaaattgcttaattttcagaaatcatatattatcattattgaagatgatcccac 3857376  T
Q  257 ccttaccttagaattgc 273  Q
    |||||||||||||||||    
T  3857375 ccttaccttagaattgc 3857359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 16090860 - 16091136
Alignment:
Q  1 aattcagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttcatc-caattatgatctacaatagcaatacagactagga 99  Q
    ||||||||||||||||||||||||  ||||  | | |||||||| ||| | || ||||||||||  |||||| |||| | |  | ||| |  || || ||    
T  16090860 aattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaacaacatggattaaga 16090959  T
Q  100 aatcatactaatcat-caaatacaacattataaacctgaatcttacgcattttctt-caaaatcatcattaaccctaattttcccaattttaccataaga 197  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||| | ||||||| ||||||||||||||||||| ||||||||||||||||| || ||    
T  16090960 aatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaaatcatcattaacccttattttcccaattttaccttagga 16091059  T
Q  198 acagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattgc 273  Q
    |||||| ||||  | || |||||||||| | ||||||| | ||||| ||||| ||||||||||||||||||||||||    
T  16091060 acagtttaattgattaactttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgc 16091136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 29181379 - 29181103
Alignment:
Q  1 aattcagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttcatc-caattatgatctacaatagcaatacagactagga 99  Q
    ||||||||||||||||||||||||| ||||  | | |||||||| ||| | || ||||||||||  |||||| |||| | |  | ||| |  || || ||    
T  29181379 aattcagcccaatcaagcattcatacagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaacaacatggattaaga 29181280  T
Q  100 aatcatactaatcat-caaatacaacattataaacctgaatcttacgcattttctt-caaaatcatcattaaccctaattttcccaattttaccataaga 197  Q
    ||||||||||||||| ||||||||||||||||| ||||| |||||| | ||||||| ||||||||||||||||||| ||||||| ||||||||| |||||    
T  29181279 aatcatactaatcattcaaatacaacattataagcctgattcttacaccttttctttcaaaatcatcattaacccttattttccaaattttaccttaaga 29181180  T
Q  198 acagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattgc 273  Q
    | |||| ||||  | ||||||||||||| | ||||||| | ||||| ||||| ||||||||||||||||||||||||    
T  29181179 atagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgc 29181103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 20906729 - 20906455
Alignment:
Q  1 aattcagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttcatc-caattatgatctacaatagcaatacagactagga 99  Q
    ||||||||||| |||||||||| || | ||| |||  ||||||| ||| | || ||||||||||  |||||| |||| |||  | ||| | ||| || ||    
T  20906729 aattcagcccattcaagcattcttaca-aaacttctcaattcatccatcatattctattttcatttcaattacgatcaacatcaacaacatagattaaga 20906631  T
Q  100 aatcatactaatcatcaaa-tacaacattataaacctgaatcttacgcattttctt-caaaatcatcattaaccctaattttcccaattttaccataaga 197  Q
    ||||||||||| ||||||| ||||||||||||||| ||| |||||  | ||||||| ||||||||||||||||||| | || |||||||||||| |||||    
T  20906630 aatcatactaaacatcaaagtacaacattataaacttgattcttataccttttctttcaaaatcatcattaacccttaatt-cccaattttaccttaaga 20906532  T
Q  198 acagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattgc 273  Q
    | |||| ||||  | ||||||||||||| ||||||||| | ||||| ||||| ||||||||||||||||||||||||    
T  20906531 atagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgc 20906455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 168 - 273
Target Start/End: Original strand, 2971209 - 2971315
Alignment:
Q  168 aaccctaattttcccaattttaccataagaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccacccttacctta 266  Q
    |||||| || |||||||||||||| ||||||||||| ||||  | ||||||||||||| ||| ||||| | ||||| ||||| |||||||||||||||||    
T  2971209 aacccttatcttcccaattttaccttaagaacagttcaattgattaattttcagaaattataaattatgactattgaaagataatcccacccttacctta 2971308  T
Q  267 gaattgc 273  Q
    |||||||    
T  2971309 gaattgc 2971315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 2966750 - 2966925
Alignment:
Q  1 aattcagcccaatcaagcattcatatagaaaattcc-aaattcatacataacatgctattttca-tccaattatgatctacaatagcaatacagactagg 98  Q
    ||||||||||| ||||||||||||| | ||| |||| |||||||| ||| | || ||||||||| |||||||| |||| |||  | ||| |  || || |    
T  2966750 aattcagcccattcaagcattcataca-aaacttccaaaattcatccatcatattctattttcattccaattacgatcaacatcaacaacatggattaag 2966848  T
Q  99 aaatcatactaatcatcaaa-tacaacattataaacctgaatcttacgcattttc-ttcaaaatcatcattaaccct 173  Q
    |||||||||||||||||||| |||||||||| |||||||| |||||  | ||||| ||||||| |||||||||||||    
T  2966849 aaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaaacatcattaaccct 2966925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 215 - 273
Target Start/End: Original strand, 31155396 - 31155455
Alignment:
Q  215 ttttcagaaatcatatattatcattattgaa-gatgatcccacccttaccttagaattgc 273  Q
    ||||||||||| ||||||||| || |||||| ||| ||||||||||||||||||||||||    
T  31155396 ttttcagaaattatatattataatcattgaaagataatcccacccttaccttagaattgc 31155455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 273
Target Start/End: Complemental strand, 14319684 - 14319623
Alignment:
Q  213 aattttcagaaatcatatattatcattattgaa-gatgatcccacccttaccttagaattgc 273  Q
    ||||||||||||| ||| ||||  || |||||| ||| ||||||||||||||||||||||||    
T  14319684 aattttcagaaattatacattaaaatcattgaaagataatcccacccttaccttagaattgc 14319623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 212 - 272
Target Start/End: Original strand, 14567203 - 14567264
Alignment:
Q  212 caattttcagaaatcatatattatcattattgaagatgatcc-cacccttaccttagaattg 272  Q
    ||||||||||||| |||||||||| || ||||||| | | || |||||||||||||||||||    
T  14567203 caattttcagaaaccatatattataatcattgaaggttagcctcacccttaccttagaattg 14567264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 60 - 273
Target Start/End: Complemental strand, 91412 - 91196
Alignment:
Q  60 ttcatccaattatgatctacaatagcaatacagactaggaaatcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaa 159  Q
    ||||||||||||||||| |||  | ||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  91412 ttcatccaattatgatcaacatcaccaatacagagtaggaaatcatattaatcatcaaatacaacattataaacctaaatcttacacattttcttcaaaa 91313  T
Q  160 tcatcattaaccctaattttcccaa---ttttaccataagaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatccca 255  Q
    |   |||||||||||| ||||||||   ||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||    
T  91312 ttgccattaaccctaa-tttcccaatttttttaccataaaaacagttaaattgcttaattttcagaaatcatatattatcattattgaaagatgatccca 91214  T
Q  256 cccttaccttagaattgc 273  Q
    ||||||||||||||||||    
T  91213 cccttaccttagaattgc 91196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 60 - 273
Target Start/End: Complemental strand, 97138 - 96922
Alignment:
Q  60 ttcatccaattatgatctacaatagcaatacagactaggaaatcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaa 159  Q
    ||||||||||||||||| |||  | ||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  97138 ttcatccaattatgatcaacatcaccaatacagagtaggaaatcatattaatcatcaaatacaacattataaacctaaatcttacacattttcttcaaaa 97039  T
Q  160 tcatcattaaccctaattttcccaa---ttttaccataagaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatccca 255  Q
    |   |||||||||||| ||||||||   ||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||    
T  97038 ttgccattaaccctaa-tttcccaatttttttaccataaaaacagttaaattgcttaattttcagaaatcatatattatcattattgaaagatgatccca 96940  T
Q  256 cccttaccttagaattgc 273  Q
    ||||||||||||||||||    
T  96939 cccttaccttagaattgc 96922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 123; Significance: 3e-63; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 85 - 273
Target Start/End: Complemental strand, 9099255 - 9099065
Alignment:
Q  85 caatacagactaggaaatcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaatcatcattaaccctaattttcccaa 184  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||| ||||||||    
T  9099255 caatatagattaggaaatcatactaatcatcaaatacaacattataaacctgattcttacacattttcttcagaatcatcattaaccctaaatttcccaa 9099156  T
Q  185 ttttaccataagaacagttaaatt-actcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattgc 273  Q
    ||||||| |||||||||||||||| | | | ||||||||||||||||||||| | ||||| ||||| ||||||||||||||||||||||||    
T  9099155 ttttaccttaagaacagttaaattgattaatttttcagaaatcatatattataactattgaaagataatcccacccttaccttagaattgc 9099065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 60 - 273
Target Start/End: Complemental strand, 21364688 - 21364476
Alignment:
Q  60 ttcatccaattatgatctacaatagcaatacagactaggaaatcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaa 159  Q
    ||||||||||||||||| |||  | ||||||||| |||||||||||| |||||||||||||||||||||||||||| | ||||||  |||||||||||||    
T  21364688 ttcatccaattatgatcaacatcaacaatacagagtaggaaatcatattaatcatcaaatacaacattataaacctaagtcttacatattttcttcaaaa 21364589  T
Q  160 tcatcattaaccctaattttcccaattttaccataagaacagttaaattactcaattttcagaaatcatatattatcattattgaa-gatgatcccaccc 258  Q
        |||||||||||| ||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||| |||| ||| |||||||||    
T  21364588 atgccattaaccctaa-tttcccaattttaccataa-aacagttaaattgcttaattttcagaaatcatatattatcattactgaaggataatcccaccc 21364491  T
Q  259 ttaccttagaattgc 273  Q
    ||||||| |||||||    
T  21364490 ttacctttgaattgc 21364476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 60 - 273
Target Start/End: Complemental strand, 23968670 - 23968458
Alignment:
Q  60 ttcatccaattatgatctacaatagcaatacagactaggaaatcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaa 159  Q
    ||||||||||||||||| |||  | ||||||||| |||||||||||| |||||||||||||||||||||||||||| | ||||||  |||||||||||||    
T  23968670 ttcatccaattatgatcaacatcaacaatacagagtaggaaatcatattaatcatcaaatacaacattataaacctaagtcttacatattttcttcaaaa 23968571  T
Q  160 tcatcattaaccctaattttcccaattttaccataagaacagttaaattactcaattttcagaaatcatatattatcattattgaa-gatgatcccaccc 258  Q
        |||||||||||| ||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||| |||| ||| |||||||||    
T  23968570 atgccattaaccctaa-tttcccaattttaccataa-aacagttaaattgcttaattttcagaaatcatatattatcattactgaaggataatcccaccc 23968473  T
Q  259 ttaccttagaattgc 273  Q
    ||||||| |||||||    
T  23968472 ttacctttgaattgc 23968458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 37 - 273
Target Start/End: Complemental strand, 20008181 - 20007940
Alignment:
Q  37 aaattcatacataacatgctattttcat-ccaattatgatctacaatagcaatacagactaggaaatcatactaatcatcaaa-tacaacattataaacc 134  Q
    |||||||| ||| | || |||||||||| ||||||| ||||  ||  | ||||| ||| || |||| |||||||| ||||||| ||||||| ||||||||    
T  20008181 aaattcattcatcatattctattttcattccaattacgatcagcatcaacaatatagattaagaaaacatactaaacatcaaagtacaacaatataaacc 20008082  T
Q  135 tgaatcttacgcattttctt-caaaatcatcattaaccctaattttcccaattttaccataagaacagttaaatt-actcaattttcagaaatcatatat 232  Q
    |||  ||||  | ||||||| |||||||||| |||||||||| ||||||||||||||| ||||||||||| |||| | | | |||||| |||| ||||||    
T  20008081 tgatccttataccttttctttcaaaatcatccttaaccctaaatttcccaattttaccttaagaacagttcaattgattaatttttcataaattatatat 20007982  T
Q  233 tatcattattg-aagatgatcccacccttaccttagaattgc 273  Q
    ||| | ||||| ||||||||||||||||||||||||||||||    
T  20007981 tatgactattgaaagatgatcccacccttaccttagaattgc 20007940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 138
Target Start/End: Original strand, 29097747 - 29097790
Alignment:
Q  95 taggaaatcatactaatcatcaaatacaacattataaacctgaa 138  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  29097747 taggaaatcatactaatcatcaaatacaacagtataaacctgaa 29097790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 215 - 273
Target Start/End: Original strand, 15458492 - 15458551
Alignment:
Q  215 ttttcagaaatcatatattatcattattgaa-gatgatcccacccttaccttagaattgc 273  Q
    ||||||||||| ||||||||| || |||||| ||| ||||||||||||||||||||||||    
T  15458492 ttttcagaaattatatattataatcattgaaagataatcccacccttaccttagaattgc 15458551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 215 - 273
Target Start/End: Original strand, 15465087 - 15465146
Alignment:
Q  215 ttttcagaaatcatatattatcattattgaa-gatgatcccacccttaccttagaattgc 273  Q
    ||||||||||| ||||||||| || |||||| ||| ||||||||||||||||||||||||    
T  15465087 ttttcagaaattatatattataatcattgaaagataatcccacccttaccttagaattgc 15465146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 273
Target Start/End: Complemental strand, 11288721 - 11288662
Alignment:
Q  215 ttttcagaaatcatatattatcattattgaa-gatgatcccacccttaccttagaattgc 273  Q
    ||||||||||| ||||||||  || |||||| ||| ||||||||||||||||||||||||    
T  11288721 ttttcagaaattatatattaagatcattgaaagataatcccacccttaccttagaattgc 11288662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 273
Target Start/End: Original strand, 31252423 - 31252484
Alignment:
Q  213 aattttcagaaatcatatattatcattattgaa-gatgatcccacccttaccttagaattgc 273  Q
    ||||||||||||| ||||||||| || ||| || ||| ||| ||||||||||||||||||||    
T  31252423 aattttcagaaattatatattataatcattaaaagataatctcacccttaccttagaattgc 31252484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 85 - 273
Target Start/End: Complemental strand, 19235252 - 19235062
Alignment:
Q  85 caatacagactaggaaatcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaatcatcattaaccctaattttcccaa 184  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||| ||||||||    
T  19235252 caatatagattaggaaatcatactaatcatcaaatacaacattataaacctgattcttacacattttcttcagaatcatcattaaccctaaatttcccaa 19235153  T
Q  185 ttttaccataagaacagttaaatt-actcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattgc 273  Q
    ||||||| |||||||||||||||| | | | ||||||||||||||||||||| | ||||| ||||| ||||||||||||||||||||||||    
T  19235152 ttttaccttaagaacagttaaattgattaatttttcagaaatcatatattataactattgaaagataatcccacccttaccttagaattgc 19235062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 12033714 - 12033438
Alignment:
Q  1 aattcagcccaatcaagcattcatatagaaaattccaaa-ttcatacataacatgctattttca-tccaattatgatctacaatagcaatacagactagg 98  Q
    ||||||||||| ||||||||||||| | ||| ||||||| ||||| ||| | || ||||||||| | |||||| |||| |||  | ||| | ||| || |    
T  12033714 aattcagcccattcaagcattcataca-aaacttccaaaattcatccatcatattctattttcaattcaattacgatcaacatcaacaacatagattaag 12033616  T
Q  99 aaatcatactaatcatcaaa-tacaacattataaacctgaatcttacgcattttctt-caaaatcatcattaaccctaattttcccaattttaccataag 196  Q
    |||||||||||| ||||||| ||||||||||||||||||| |||||  | ||||||| ||||||||||||||||||| | ||||||||||||||| ||||    
T  12033615 aaatcatactaaacatcaaagtacaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaatttcccaattttaccttaag 12033516  T
Q  197 aacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattgc 273  Q
    ||||||| ||||  | ||||||||||||| ||||||||| | ||||| ||||| ||||||||||||||||||||||||    
T  12033515 aacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgc 12033438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 14865631 - 14865907
Alignment:
Q  1 aattcagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttcatc-caattatgatctacaatagcaatacagactagga 99  Q
    ||||||||||||||||||||||||| ||||  | | |||||||| ||| | || ||||||||||  |||||| |||| | |  | ||| |  || || ||    
T  14865631 aattcagcccaatcaagcattcatacagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaacaacatggattaaga 14865730  T
Q  100 aatcatactaatcatcaaa-tacaacattataaacctgaatcttacgcattttctt-caaaatcatcattaaccctaattttcccaattttaccataaga 197  Q
    |||||||||||||||| || ||||||||||||||||||  |||||| | ||||||| ||||||||||||||||| | ||||||||||||||||| |||||    
T  14865731 aatcatactaatcatccaagtacaacattataaacctgcttcttacaccttttctttcaaaatcatcattaaccattattttcccaattttaccttaaga 14865830  T
Q  198 acagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattgc 273  Q
    |||||| ||||  | ||||||||||||| | ||||||| | ||||| ||||| ||||||||||||||||||||||||    
T  14865831 acagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgc 14865907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 98 - 273
Target Start/End: Original strand, 17131615 - 17131793
Alignment:
Q  98 gaaatcatactaatcatcaaa-tacaacattataaacctgaatcttacgcattttctt-caaaatcatcattaaccctaattttcccaattttaccataa 195  Q
    ||||||||||||| ||||||| |||||||||||||||||||  ||||  | ||||||| |||||||||| |||||||||| ||||||||||||||| |||    
T  17131615 gaaatcatactaaacatcaaagtacaacattataaacctgatccttataccttttctttcaaaatcatccttaaccctaaatttcccaattttaccttaa 17131714  T
Q  196 gaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattgc 273  Q
    |||||||| ||||  | ||||||||||||| ||||||||| | ||||| ||||| ||||||||||||||||||||||||    
T  17131715 gaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgc 17131793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 272
Target Start/End: Complemental strand, 23370562 - 23370500
Alignment:
Q  211 tcaattttcagaaatcatatattatcattattga-agatgatcccacccttaccttagaattg 272  Q
    ||||||||||||||| ||| ||||| |||||||| ||||  ||||||||||||||||||||||    
T  23370562 tcaattttcagaaattatagattatgattattgagagatagtcccacccttaccttagaattg 23370500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 273
Target Start/End: Original strand, 51301589 - 51301650
Alignment:
Q  213 aattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattgc 273  Q
    ||||||||||||| | ||||||| ||||||| ||||| ||| ||||||||||||||||||||    
T  51301589 aattttcagaaattacatattatgattattggaagataatctcacccttaccttagaattgc 51301650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 272
Target Start/End: Complemental strand, 13302295 - 13302235
Alignment:
Q  213 aattttcagaaatcatatattatcattattgaa-gatgatcccacccttaccttagaattg 272  Q
    ||||||||||||| | ||||||| ||||||||| ||| ||| |||||||||||||||||||    
T  13302295 aattttcagaaattacatattatgattattgaaagataatctcacccttaccttagaattg 13302235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 272
Target Start/End: Complemental strand, 13323842 - 13323782
Alignment:
Q  213 aattttcagaaatcatatattatcattattgaa-gatgatcccacccttaccttagaattg 272  Q
    ||||||||||||| | ||||||| ||||||||| ||| ||| |||||||||||||||||||    
T  13323842 aattttcagaaattacatattatgattattgaaagataatctcacccttaccttagaattg 13323782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 273
Target Start/End: Complemental strand, 10389496 - 10389437
Alignment:
Q  215 ttttcagaaatcatatattatcattattgaa-gatgatcccacccttaccttagaattgc 273  Q
    ||||||||||| ||| ||||| || |||||| ||| ||||||||||||||||||||||||    
T  10389496 ttttcagaaattatacattataatcattgaaagataatcccacccttaccttagaattgc 10389437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 273
Target Start/End: Complemental strand, 10414585 - 10414526
Alignment:
Q  215 ttttcagaaatcatatattatcattattgaa-gatgatcccacccttaccttagaattgc 273  Q
    ||||||||||| ||| ||||| || |||||| ||| ||||||||||||||||||||||||    
T  10414585 ttttcagaaattatacattataatcattgaaagataatcccacccttaccttagaattgc 10414526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 273
Target Start/End: Complemental strand, 10421255 - 10421196
Alignment:
Q  215 ttttcagaaatcatatattatcattattgaa-gatgatcccacccttaccttagaattgc 273  Q
    ||||||||||| ||| ||||| || |||||| ||| ||||||||||||||||||||||||    
T  10421255 ttttcagaaattatacattataatcattgaaagataatcccacccttaccttagaattgc 10421196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 272
Target Start/End: Complemental strand, 13312951 - 13312891
Alignment:
Q  213 aattttcagaaatcatatattatcattattgaa-gatgatcccacccttaccttagaattg 272  Q
    |||||||| |||| | ||||||| ||||||||| ||| ||| |||||||||||||||||||    
T  13312951 aattttcaaaaattacatattatgattattgaaagataatctcacccttaccttagaattg 13312891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 79760 - 79484
Alignment:
Q  1 aattcagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttcatc-caattatgatctacaatagcaatacagactagga 99  Q
    ||||||||||||||||||||||||| ||||  | | |||||||| ||| | || ||||||||||  |||||| |||| | |  | ||| |  || || ||    
T  79760 aattcagcccaatcaagcattcatacagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaacaacatggattaaga 79661  T
Q  100 aatcatactaatcat-caaatacaacattataaacctgaatcttacgcattttctt-caaaatcatcattaaccctaattttcccaattttaccataaga 197  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||| | ||||||| ||||||||||||||||||| ||||||||||||||||| |||||    
T  79660 aatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaaatcatcattaacccttattttcccaattttaccttaaga 79561  T
Q  198 acagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattgc 273  Q
    |||||| ||||  | ||||||||||||| | ||||||| | ||||| ||||| ||||||||||||||||||||||||    
T  79560 acagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgc 79484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 16147100 - 16146824
Alignment:
Q  1 aattcagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttcatc-caattatgatctacaatagcaatacagactagga 99  Q
    ||||||||||||||||||||||||| ||||  | | |||||||| ||| | || ||||||||||  |||||| |||| | |  | ||| |  || || ||    
T  16147100 aattcagcccaatcaagcattcatacagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaacaacatggattaaga 16147001  T
Q  100 aatcatactaatcat-caaatacaacattataaacctgaatcttacgcattttctt-caaaatcatcattaaccctaattttcccaattttaccataaga 197  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||| | ||||||| ||||||||||||||||||| ||||||| ||||||||| |||||    
T  16147000 aatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaaatcatcattaacccttattttccaaattttaccttaaga 16146901  T
Q  198 acagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattgc 273  Q
    |||||| ||||  | ||||||||||||| | ||||||| | ||||| ||||| ||||||||||||||||||||||||    
T  16146900 acagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgc 16146824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 273
Target Start/End: Original strand, 27906266 - 27906327
Alignment:
Q  213 aattttcagaaatcatatattatcattattgaa-gatgatcccacccttaccttagaattgc 273  Q
    ||||||||||||| ||| ||||| || |||||| ||| |||||||||||| |||||||||||    
T  27906266 aattttcagaaattatacattatgatcattgaaagataatcccacccttatcttagaattgc 27906327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 6e-43; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 21710604 - 21710879
Alignment:
Q  1 aattcagcccaatcaagcattcatatagaaaattcc-aaattcatacataacatgctattttca-tccaattatgatctacaatagcaatacagactagg 98  Q
    ||||||||||| ||||||||||||| | ||  |||| |||||||| ||| | || ||||||||| ||||||||||||| |||  | ||| | ||| || |    
T  21710604 aattcagcccattcaagcattcataca-aagcttccaaaattcatccatcatattctattttcattccaattatgatcaacatcaacaacatagattaag 21710702  T
Q  99 aaatcatactaatcatcaaatacaacattataaacctgaatcttacgcattttc-ttcaaaatcatcattaaccctaattttcccaattttaccataaga 197  Q
     ||||||||||| |||||| || ||||||||||||||||  ||||  | ||||| |||||||||||| | |||||||| ||||||||||||||| |||||    
T  21710703 gaatcatactaaacatcaagtataacattataaacctgatccttatactttttctttcaaaatcatcttaaaccctaaatttcccaattttaccttaaga 21710802  T
Q  198 acagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattgc 273  Q
    |||||| ||||  | ||||||||||||| ||||||||| | ||||| ||||| ||||||||||||||||||||||||    
T  21710803 acagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgc 21710879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 98 - 273
Target Start/End: Complemental strand, 20851304 - 20851126
Alignment:
Q  98 gaaatcatactaatcatcaaa-tacaacattataaacctgaatcttacgcattttctt-caaaatcatcattaaccctaattttcccaattttaccataa 195  Q
    ||||||||||||| ||||||| ||||||| |||||||||||  ||||  | ||||||| |||||||||| |||||||||| ||||||||||||||| |||    
T  20851304 gaaatcatactaaacatcaaagtacaacaatataaacctgatccttataccttttctttcaaaatcatccttaaccctaaatttcccaattttaccttaa 20851205  T
Q  196 gaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattgc 273  Q
    |||||||| ||||  | ||||||||||||| ||||||||| | ||||| ||||| ||||||||||||||||||||||||    
T  20851204 gaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgc 20851126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 98 - 273
Target Start/End: Complemental strand, 20857931 - 20857753
Alignment:
Q  98 gaaatcatactaatcatcaaa-tacaacattataaacctgaatcttacgcattttctt-caaaatcatcattaaccctaattttcccaattttaccataa 195  Q
    |||| |||||||| ||||||| ||||||| |||||||||||  ||||  | ||||||| |||||||||| |||||||||| ||||||||||||||| |||    
T  20857931 gaaaacatactaaacatcaaagtacaacaatataaacctgatccttataccttttctttcaaaatcatccttaaccctaaatttcccaattttaccttaa 20857832  T
Q  196 gaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattgc 273  Q
    |||||||| ||||  | ||||||||||||| ||||||||| | ||||| ||||| ||||||||||||||||||||||||    
T  20857831 gaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgc 20857753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 98 - 273
Target Start/End: Original strand, 21706159 - 21706337
Alignment:
Q  98 gaaatcatactaatcatcaaa-tacaacattataaacctgaatcttacgcattttctt-caaaatcatcattaaccctaattttcccaattttaccataa 195  Q
    |||| |||||||| ||||||| ||||||| |||||||||||  ||||  | ||||||| |||||||||| |||||||||| ||||||||||||||| |||    
T  21706159 gaaaacatactaaacatcaaagtacaacaatataaacctgatccttataccttttctttcaaaatcatccttaaccctaaatttcccaattttaccttaa 21706258  T
Q  196 gaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattgc 273  Q
    |||||||| ||||  | ||||||||||||| ||||||||| | ||||| ||||| ||||||||||||||||||||||||    
T  21706259 gaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgc 21706337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 85 - 272
Target Start/End: Complemental strand, 16247 - 16059
Alignment:
Q  85 caatacagactaggaaatcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaatcatcattaaccctaattttcccaa 184  Q
    ||||| ||| ||| |||||||||||||||||||||||||||| || ||||||| |||| | ||||||||||||||||||||||||||||||  |||| |     
T  16247 caatatagattagaaaatcatactaatcatcaaatacaacatcatgaacctgattcttgcacattttcttcaaaatcatcattaaccctaa-attccaat 16149  T
Q  185 ttttaccataagaacagttaaatt-actcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattg 272  Q
    ||||| | ||| |||||||||||| | | | ||||||||||||||||||||| | ||||| ||||| |||||||||||||||||||||||    
T  16148 ttttatcttaaaaacagttaaattgattaatttttcagaaatcatatattataactattgaaagataatcccacccttaccttagaattg 16059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 50241 - 49964
Alignment:
Q  1 aattcagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttcatc-caattatgatctacaatagcaatacagactagga 99  Q
    ||||||||||||||||||||||||| ||||  | | |||||||| ||| | || ||||||||||  |||||| |||| | |  | ||| |  || || ||    
T  50241 aattcagcccaatcaagcattcatacagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaacaacatggattaaga 50142  T
Q  100 aatcatactaatcat-caaatacaacattataaacctgaatcttacgcattttctt-caaaatcatcattaaccctaattttcccaa-ttttaccataag 196  Q
    ||||||||||||| | |||||| |||||||||||||||| |||||| | ||||||| ||||||||||||||||||| |||||||||| ||||||| ||||    
T  50141 aatcatactaatctttcaaatataacattataaacctgattcttacaccttttctttcaaaatcatcattaacccttattttcccaatttttaccttaag 50042  T
Q  197 aacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattgc 273  Q
    ||||||| ||||  | |||||| |||||| | ||||||| | ||||| ||||| ||||||||||||||||||||||||    
T  50041 aacagtttaattgattaatttttagaaattacatattatgactattgaaagataatcccacccttaccttagaattgc 49964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 98 - 273
Target Start/End: Complemental strand, 24320842 - 24320664
Alignment:
Q  98 gaaatcatactaatcatcaaa-tacaacattataaacctgaatcttacgcattttc-ttcaaaatcatcattaaccctaattttcccaattttaccataa 195  Q
    ||||||||||||| ||||||| ||||||| |||||||||||  | ||  | ||||| |||||||||||| |||||||||| ||||||||||||||| |||    
T  24320842 gaaatcatactaaacatcaaagtacaacaatataaacctgatccctataccttttctttcaaaatcatccttaaccctaaatttcccaattttaccttaa 24320743  T
Q  196 gaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattgc 273  Q
    |||||||| ||||  | ||||||||||||| ||||||||| | ||||| ||||| ||||||||||||||||||||||||    
T  24320742 gaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgc 24320664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 272
Target Start/End: Original strand, 44477621 - 44477683
Alignment:
Q  211 tcaattttcagaaatcatatattatcattattga-agatgatcccacccttaccttagaattg 272  Q
    ||||||||||||||| ||| ||||| |||||||| ||||  || |||||||||||||||||||    
T  44477621 tcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagaattg 44477683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 272
Target Start/End: Original strand, 44492779 - 44492841
Alignment:
Q  211 tcaattttcagaaatcatatattatcattattga-agatgatcccacccttaccttagaattg 272  Q
    ||||||||||||||| ||| ||||| |||||||| ||||  || |||||||||||||||||||    
T  44492779 tcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagaattg 44492841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 267
Target Start/End: Complemental strand, 27940907 - 27940851
Alignment:
Q  212 caattttcagaaatcatatattatcattattgaagatgatcc-cacccttaccttag 267  Q
    |||||||||||||||||||||||| || ||||||| | | || ||||||||||||||    
T  27940907 caattttcagaaatcatatattataatcattgaaggttagcctcacccttaccttag 27940851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 37 - 273
Target Start/End: Complemental strand, 25181163 - 25180923
Alignment:
Q  37 aaattcatacataacatgctattttcat-ccaattatgatctacaatagcaatacagactaggaaatcatactaatcatcaaa-tacaacattataaacc 134  Q
    |||||||| ||| | || |||||||||| ||||||| |||| |||  | ||| | ||| || ||||||||||||| ||||||| ||||| | ||||||||    
T  25181163 aaattcatccatcatattctattttcattccaattacgatcaacatcaacaacatagattaagaaatcatactaaacatcaaagtacaaaaatataaacc 25181064  T
Q  135 tgaatcttacgcattttctt-caaaatcatcattaaccctaattttcccaattttaccataagaacagttaaattactcaattttcagaaatcatatatt 233  Q
    |||    ||  | ||||||| |||||||||| |||||||||| ||||||||||||||| ||||||||||| ||||  | ||||||||||||| |||||||    
T  25181063 tgatcaatataccttttctttcaaaatcatccttaaccctaaatttcccaattttaccttaagaacagttcaattgattaattttcagaaattatatatt 25180964  T
Q  234 atcattattg-aagatgatcccacccttaccttagaattgc 273  Q
    || | ||||| ||||| ||||||||||||||||||||||||    
T  25180963 atgactattgaaagataatcccacccttaccttagaattgc 25180923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 98 - 271
Target Start/End: Original strand, 10460 - 10636
Alignment:
Q  98 gaaatcatactaatcatcaaa-tacaacattataaacctgaatcttacgcattttctt-caaaatcatcattaaccctaattttcccaattttaccataa 195  Q
    ||||||||||||| ||||||| ||||||| ||||||||| |  | ||  | ||||||| |||||||||| |||||||||| ||||||||||||||| |||    
T  10460 gaaatcatactaaacatcaaagtacaacaatataaaccttatccctataccttttctttcaaaatcatccttaaccctaaatttcccaattttaccttaa 10559  T
Q  196 gaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaatt 271  Q
    ||||| || ||||  | ||||||||||||| ||||||||| | ||||| ||||| ||||||||||||||||||||||    
T  10560 gaacaattcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaatt 10636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 273
Target Start/End: Original strand, 26885183 - 26885243
Alignment:
Q  213 aattttcagaaatcatatattatcattattgaa-gatgatcccacccttaccttagaattgc 273  Q
    ||||||||||||| ||| ||||  ||||||||| ||| ||||||||||||||||||||||||    
T  26885183 aattttcagaaattatacattag-attattgaaagataatcccacccttaccttagaattgc 26885243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 273
Target Start/End: Complemental strand, 27207774 - 27207713
Alignment:
Q  213 aattttcagaaatcatatattatcattattgaa-gatgatcccacccttaccttagaattgc 273  Q
    ||||||||||||| ||| ||||  || |||||| ||| ||||||||||||||||||||||||    
T  27207774 aattttcagaaattatacattaaaatcattgaaagataatcccacccttaccttagaattgc 27207713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 98 - 272
Target Start/End: Original strand, 9219 - 9396
Alignment:
Q  98 gaaatcatactaatcatcaaat-acaacattataaacctgaatcttacgcattttctt-caaaatcatcattaaccctaattttcccaattttaccat-a 194  Q
    ||||||||||||| |||||||| ||||||  |||||||| | |||||| | ||||||| ||||||||||||||||||| | || |||||||||||  | |    
T  9219 gaaatcatactaaacatcaaattacaacacaataaacctaattcttacaccttttctttcaaaatcatcattaacccttaatt-cccaattttactttta 9317  T
Q  195 agaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattg 272  Q
    ||||||||| ||||  | ||||||||||||| ||||||||| | ||||| ||||| |||||||||||||||||||||||    
T  9318 agaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattg 9396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 135225 - 135499
Alignment:
Q  1 aattcagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttcat-ccaattatgatctacaat-agcaatacagactagg 98  Q
    ||||||||||| ||||||||||||| | ||| |||| ||||||| ||| | || |||||||||| |||||| ||||| || || | ||| | ||| || |    
T  135225 aattcagcccattcaagcattcataca-aaacttcccaattcatccatcatattctattttcattccaattttgatc-acgatcaacaacatagattaag 135322  T
Q  99 aaatcatactaatcatcaaat-acaacattataaacctgaatcttacgcattttctt-caaaatcatcattaaccctaattttcccaattttaccat-aa 195  Q
    |||||||||||| |||||||| ||||||  |||||||||| |||||| | ||||||| ||||||||||||||||||| | || | |||||||||| | ||    
T  135323 aaatcatactaa-catcaaattacaacacaataaacctgattcttacaccttttctttcaaaatcatcattaacccttaatt-ctcaattttacctttaa 135420  T
Q  196 gaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattgc 273  Q
    |||||||| ||||  | ||||||||||||| ||||||||| | ||||| ||||| ||| ||| ||||||||||||||||    
T  135421 gaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatctcacgcttaccttagaattgc 135499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1318 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold1318
Description:

Target: scaffold1318; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 119 - 273
Target Start/End: Complemental strand, 2062 - 1906
Alignment:
Q  119 tacaacattataaacctgaatcttacgcattttctt-caaaatcatcattaaccctaattttcccaattttaccat-aagaacagttaaattactcaatt 216  Q
    |||||||  |||||||| | |||||| | ||||||| ||||||||||||||||||| | || |||||||||||  | |||||||||| ||||  | ||||    
T  2062 tacaacacaataaacctaattcttacaccttttctttcaaaatcatcattaacccttaatt-cccaattttactttcaagaacagttcaattgattaatt 1964  T
Q  217 ttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattgc 273  Q
    ||||||||| ||||||||| | ||||| ||||| ||||||||||||||||| ||||||    
T  1963 ttcagaaattatatattatgactattgaaagataatcccacccttaccttacaattgc 1906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0099 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0099
Description:

Target: scaffold0099; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 95 - 265
Target Start/End: Original strand, 12836 - 13019
Alignment:
Q  95 taggaaatcatactaatcat-caaatacaacattataaacct-gaatctt-acgcattttcttcaaaatcat-cattaaccctaattttccc--aatttt 188  Q
    |||||||||||||||||||| ||||||||||||||||||||| || |||| || ||||| ||||| |||||| |||||||||||| ||||||  | ||||    
T  12836 taggaaatcatactaatcatacaaatacaacattataaacctagattcttaacacatttccttcagaatcatacattaaccctaaatttccccaattttt 12935  T
Q  189 acc-ataagaacagttaaatt----actcaattttcagaaatcatatattatcattattg--aagatgatcccacccttacctt 265  Q
    |||  |||||||||||||| |    | | | |||| |||||||||||||||  | |||||  ||||| ||||||||||||||||    
T  12936 acctttaagaacagttaaaatttagattaattttttagaaatcatatattagaactattgtaaagataatcccacccttacctt 13019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0609 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0609
Description:

Target: scaffold0609; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 273
Target Start/End: Complemental strand, 5912 - 5851
Alignment:
Q  213 aattttcagaaatcatatattatcattattgaa-gatgatcccacccttaccttagaattgc 273  Q
    ||||||||||||| ||||||||| || |||||| ||| ||||||||||||||||||||||||    
T  5912 aattttcagaaattatatattataatcattgaaagataatcccacccttaccttagaattgc 5851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 215 - 273
Target Start/End: Complemental strand, 13947 - 13888
Alignment:
Q  215 ttttcagaaatcatatattatcattattgaa-gatgatcccacccttaccttagaattgc 273  Q
    ||||||||||| ||||||||| || |||||| ||| ||||||||||||||||||||||||    
T  13947 ttttcagaaattatatattataatcattgaaagataatcccacccttaccttagaattgc 13888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 215 - 273
Target Start/End: Original strand, 6 - 65
Alignment:
Q  215 ttttcagaaatcatatattatcattattgaa-gatgatcccacccttaccttagaattgc 273  Q
    ||||||||||||||||||||  | ||||||| ||| ||||||||||||||||||||||||    
T  6 ttttcagaaatcatatattagaactattgaaagataatcccacccttaccttagaattgc 65  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 272
Target Start/End: Complemental strand, 10252 - 10190
Alignment:
Q  211 tcaattttcagaaatcatatattatcattattga-agatgatcccacccttaccttagaattg 272  Q
    ||||||||||||||| ||| ||||| |||||||| ||||  ||||||||||||||||||||||    
T  10252 tcaattttcagaaattatagattatgattattgagagatagtcccacccttaccttagaattg 10190  T

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Target: scaffold0544 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 272
Target Start/End: Complemental strand, 1582 - 1520
Alignment:
Q  211 tcaattttcagaaatcatatattatcattattga-agatgatcccacccttaccttagaattg 272  Q
    ||||||||||||||| ||| ||||| |||||||| ||||  ||||||||||||||||||||||    
T  1582 tcaattttcagaaattatagattatgattattgagagatagtcccacccttaccttagaattg 1520  T

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Target: scaffold0127 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 272
Target Start/End: Original strand, 10239 - 10299
Alignment:
Q  213 aattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttagaattg 272  Q
    ||||||||||||| | ||||||| ||||||| ||||| ||| |||||||||||||||||||    
T  10239 aattttcagaaattacatattatgattattggaagataatctcacccttaccttagaattg 10299  T

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Target: scaffold0026 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 273
Target Start/End: Original strand, 111684 - 111747
Alignment:
Q  211 tcaattttcagaaatcatatattatcattattga-agatgatcccacccttaccttagaattgc 273  Q
    ||||||||||||||| ||| ||||| |||||||| ||||  || ||||||||||||||||||||    
T  111684 tcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagaattgc 111747  T

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Target: scaffold0815 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 189
Target Start/End: Original strand, 1388 - 1425
Alignment:
Q  152 cttcaaaatcatcattaaccctaattttcccaatttta 189  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  1388 cttcaaaatcagcattaaccctaatttttccaatttta 1425  T

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Target: scaffold0261 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 273
Target Start/End: Complemental strand, 23624 - 23563
Alignment:
Q  213 aattttcagaaatcatatattatcattattgaa-gatgatcccacccttaccttagaattgc 273  Q
    ||||||||||||| ||| ||||| || ||| || ||| ||||||||||||||||||||||||    
T  23624 aattttcagaaattatacattatgatcattcaaagataatcccacccttaccttagaattgc 23563  T

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