View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11553_low_13 (Length: 251)
Name: NF11553_low_13
Description: NF11553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11553_low_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 44083701 - 44083941
Alignment:
| Q |
1 |
ttagtttgaaacaaattaaatcttatccattttgagagaaaagattagtggaacaaattatacgcacgatcaaaatcaacaagagtgggagccaacgtta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44083701 |
ttagtttgaaacaaattaaatcttatccattttgagagaaaagattagtggaacaaattacacgcacgatcaaaatcaacaagagtgggagccaacgttt |
44083800 |
T |
|
| Q |
101 |
gtatgaaagcatcatgccattatccaatccaattgttattaatttagttgattaatgtctttaaaagccattannnnnnngacaaatgcaaaggccatca |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
44083801 |
gtatgaaagcattatgccattatccaat-caattgttattaatttagttgattaatgtctttaaaagccattatttttttgacaaatgcaaaggccatca |
44083899 |
T |
|
| Q |
201 |
ttaaaattgttttattgcatttgcatccgtcactttcttctc |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44083900 |
ttaaaattgttttattgcatttgcatccgtcactttcttctc |
44083941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 44096144 - 44095974
Alignment:
| Q |
1 |
ttagtttgaaacaaattaaatcttatccattttgagagaaaagatta----gtggaacaaattatacgcacgatcaaaatcaacaagagtgggagccaac |
96 |
Q |
| |
|
||||||||||| ||| |||||||| ||||||||| |||| ||||||| |||||| ||| |||||| |||||| ||||||| ||||||||||||||| |
|
|
| T |
44096144 |
ttagtttgaaaaaaagtaaatcttgtccattttgtgagagaagattaattagtggaagaaactatacgtacgatcgtaatcaactagagtgggagccaac |
44096045 |
T |
|
| Q |
97 |
gttagtatgaaagcatcatgccattatccaatccaattgttattaatttagttgattaatgtctttaaaag |
167 |
Q |
| |
|
||| || | | | ||| | |||| |||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
44096044 |
gtttgtgtcataacattaagccactatccaatccaattgttattaatttagttgattaatgtctctaaaag |
44095974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University