View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11553_low_17 (Length: 226)

Name: NF11553_low_17
Description: NF11553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11553_low_17
NF11553_low_17
[»] chr5 (6 HSPs)
chr5 (11-208)||(38848991-38849188)
chr5 (16-208)||(38749919-38750111)
chr5 (10-208)||(39310723-39310921)
chr5 (50-208)||(38807281-38807439)
chr5 (50-189)||(38865998-38866137)
chr5 (50-208)||(38867942-38868099)
[»] chr3 (1 HSPs)
chr3 (129-194)||(34723177-34723241)
[»] scaffold0754 (1 HSPs)
scaffold0754 (120-188)||(3721-3789)
[»] scaffold0563 (6 HSPs)
scaffold0563 (120-188)||(1709-1777)
scaffold0563 (120-188)||(3478-3546)
scaffold0563 (120-188)||(5306-5374)
scaffold0563 (120-188)||(7388-7456)
scaffold0563 (120-188)||(10253-10321)
scaffold0563 (120-188)||(571-639)
[»] scaffold0543 (1 HSPs)
scaffold0543 (120-188)||(162-230)
[»] scaffold0492 (2 HSPs)
scaffold0492 (120-188)||(613-681)
scaffold0492 (120-188)||(1708-1776)
[»] chr1 (5 HSPs)
chr1 (120-188)||(15830134-15830202)
chr1 (144-188)||(46621608-46621652)
chr1 (120-188)||(15831862-15831930)
chr1 (120-188)||(15833589-15833657)
chr1 (144-188)||(46627341-46627385)


Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 11 - 208
Target Start/End: Complemental strand, 38849188 - 38848991
Alignment:
Q  11 gtgagatgaatgtttacaactcaagaccattatatatctgagcaataaaatgtcccacatcgtttagaacaaagcatatgaaacggtttataagcttcca 110  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38849188 gtgacatgaatgtttacaactcaagaccataatatatctgagcaataaaatgtcccacatcgtttagaacaaagcatatgaaacggtttataagcttcca 38849089  T
Q  111 acacaggcaattgtttgctgagttgattaacaccaacttgtaacccatgtgggagcatcaaggtgatggaacatggctgtgtcttaacaggttgggct 208  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38849088 acacagggatttgtttgctgagttgattaacaccaacttgtaacccatgtgggagcatcaaggtgatggaacatggctgtgtcttaacaggttgggct 38848991  T

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Target: chr5; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 38749919 - 38750111
Alignment:
Q  16 atgaatgtttacaactcaagaccattatatatctgagcaataaaatgtcccacatcgtttagaacaaagcatatgaaacggtttataagcttccaacaca 115  Q
    |||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||| |||||||||||    
T  38749919 atgaatctttccaactcaagaccataatatatctgagcaataaaatgtcccacatcgtttagaacatagaatatgaaatggtttataaccttccaacaca 38750018  T
Q  116 ggcaattgtttgctgagttgattaacaccaacttgtaacccatgtgggagcatcaaggtgatggaacatggctgtgtcttaacaggttgggct 208  Q
    | || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38750019 gccatttgtttgctgagttgaataacaccaacttgtaacccatgtgggagcatcaaggtgatggaacatggctgtgtcttaacaggttgggct 38750111  T

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Target: chr5; HSP #3
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 10 - 208
Target Start/End: Complemental strand, 39310921 - 39310723
Alignment:
Q  10 agtgagatgaatgtttacaactcaagaccattatatatctgagcaataaaatgtcccacatcgtttagaacaaagcatatgaaacggtttataagcttcc 109  Q
    ||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||| || ||||| || ||||||||| |||||    
T  39310921 agtgacatgaatgtttccaactcaagaccataatatatctgagcaataaaatgtcccacatcgtttaaaacatagaatatgcaatggtttataaacttcc 39310822  T
Q  110 aacacaggcaattgtttgctgagttgattaacaccaacttgtaacccatgtgggagcatcaaggtgatggaacatggctgtgtcttaacaggttgggct 208  Q
    ||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||||    
T  39310821 aacacagccaattgttcgctgagttgatttacaccaacttgtaacccatgtgggagcaacaaggtgatggaacatgattgtgtcttaacaggttgggct 39310723  T

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Target: chr5; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 50 - 208
Target Start/End: Original strand, 38807281 - 38807439
Alignment:
Q  50 gagcaataaaatgtcccacatcgtttagaacaaagcatatgaaacggtttataagcttccaacacaggcaattgtttgctgagttgattaacaccaactt 149  Q
    ||||||||||||||||||||||||||| |||| |    ||| || |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  38807281 gagcaataaaatgtcccacatcgtttaaaacataattaatgcaatggtttataggcttccaacacagccaattgtttgctgagttgattaacaccaactt 38807380  T
Q  150 gtaacccatgtgggagcatcaaggtgatggaacatggctgtgtcttaacaggttgggct 208  Q
    || ||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||    
T  38807381 gtgacccatgtgggagcaacaaagggatggaacatggctgtgtcttaacaggttgggct 38807439  T

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Target: chr5; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 50 - 189
Target Start/End: Complemental strand, 38866137 - 38865998
Alignment:
Q  50 gagcaataaaatgtcccacatcgtttagaacaaagcatatgaaacggtttataagcttccaacacaggcaattgtttgctgagttgattaacaccaactt 149  Q
    ||||||||||||||||||||||| |||||||| |  ||||| ||  |||||||| |||||||||||| |||||||| |||||||||||||||||||||||    
T  38866137 gagcaataaaatgtcccacatcggttagaacataaaatatgcaattgtttataaacttccaacacagccaattgttcgctgagttgattaacaccaactt 38866038  T
Q  150 gtaacccatgtgggagcatcaaggtgatggaacatggctg 189  Q
    || ||||||||||||||| |||||||||||||||||||||    
T  38866037 gtgacccatgtgggagcaccaaggtgatggaacatggctg 38865998  T

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Target: chr5; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 50 - 208
Target Start/End: Complemental strand, 38868099 - 38867942
Alignment:
Q  50 gagcaataaaatgtcccacatcgtttagaacaaagcatatgaaacggtttataagcttccaacacaggcaattgtttgctgagttgattaacaccaactt 149  Q
    ||||||||||||||| ||||||||||| |||| || ||||| || |||||||   |||||||||||| |||||||| ||||| |||||||||||||||||    
T  38868099 gagcaataaaatgtctcacatcgtttaaaacatagaatatgcaatggtttatgtccttccaacacagccaattgttagctga-ttgattaacaccaactt 38868001  T
Q  150 gtaacccatgtgggagcatcaaggtgatggaacatggctgtgtcttaacaggttgggct 208  Q
    ||||||||||||||||||| |||||||||||||||||   |||||||||||||||||||    
T  38868000 gtaacccatgtgggagcattaaggtgatggaacatggacctgtcttaacaggttgggct 38867942  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 194
Target Start/End: Original strand, 34723177 - 34723241
Alignment:
Q  129 tgagttgattaacaccaacttgtaacccatgtgggagcatcaaggtgatggaacatggctgtgtct 194  Q
    ||||||||||||||||||||||| ||||||||||| ||| |||| |||| |||||||||| |||||    
T  34723177 tgagttgattaacaccaacttgtgacccatgtggg-gcaacaagatgattgaacatggctatgtct 34723241  T

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Target: scaffold0754 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0754
Description:

Target: scaffold0754; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 188
Target Start/End: Original strand, 3721 - 3789
Alignment:
Q  120 attgtttgctgagttgattaacaccaacttgtaacccatgtgggagcatcaaggtgatggaacatggct 188  Q
    ||||||||||||||||  || | ||||||||| ||||| ||||||||| ||| |||||||||| |||||    
T  3721 attgtttgctgagttggatagcgccaacttgtgacccaagtgggagcaccaaagtgatggaacgtggct 3789  T

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Target: scaffold0563 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: scaffold0563
Description:

Target: scaffold0563; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 188
Target Start/End: Complemental strand, 1777 - 1709
Alignment:
Q  120 attgtttgctgagttgattaacaccaacttgtaacccatgtgggagcatcaaggtgatggaacatggct 188  Q
    ||||||||||||||||  || | ||||||||| ||||| ||||||||| ||| |||||||||| |||||    
T  1777 attgtttgctgagttgggtagcgccaacttgtgacccaagtgggagcaccaaagtgatggaacgtggct 1709  T

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Target: scaffold0563; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 188
Target Start/End: Complemental strand, 3546 - 3478
Alignment:
Q  120 attgtttgctgagttgattaacaccaacttgtaacccatgtgggagcatcaaggtgatggaacatggct 188  Q
    ||||||||||||||||  || | ||||||||| ||||| ||||||||| ||| |||||||||| |||||    
T  3546 attgtttgctgagttgggtagcgccaacttgtgacccaagtgggagcaccaaagtgatggaacgtggct 3478  T

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Target: scaffold0563; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 188
Target Start/End: Complemental strand, 5374 - 5306
Alignment:
Q  120 attgtttgctgagttgattaacaccaacttgtaacccatgtgggagcatcaaggtgatggaacatggct 188  Q
    ||||||||||||||||  || | ||||||||| ||||| ||||||||| ||| |||||||||| |||||    
T  5374 attgtttgctgagttgggtagcgccaacttgtgacccaagtgggagcaccaaagtgatggaacgtggct 5306  T

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Target: scaffold0563; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 188
Target Start/End: Original strand, 7388 - 7456
Alignment:
Q  120 attgtttgctgagttgattaacaccaacttgtaacccatgtgggagcatcaaggtgatggaacatggct 188  Q
    ||||||||||||||||  || | ||||||||| ||||| ||||||||| ||| |||||||||| |||||    
T  7388 attgtttgctgagttgggtagcgccaacttgtgacccaagtgggagcaccaaagtgatggaacgtggct 7456  T

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Target: scaffold0563; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 188
Target Start/End: Original strand, 10253 - 10321
Alignment:
Q  120 attgtttgctgagttgattaacaccaacttgtaacccatgtgggagcatcaaggtgatggaacatggct 188  Q
    ||||||||||||||||  || | ||||||||| ||||| ||||||||| ||| |||||||||| |||||    
T  10253 attgtttgctgagttgggtagcgccaacttgtgacccaagtgggagcaccaaagtgatggaacgtggct 10321  T

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Target: scaffold0563; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 188
Target Start/End: Original strand, 571 - 639
Alignment:
Q  120 attgtttgctgagttgattaacaccaacttgtaacccatgtgggagcatcaaggtgatggaacatggct 188  Q
    ||||||||||||||||  || | ||||||||| ||||| | ||||||| ||| |||||||||| |||||    
T  571 attgtttgctgagttgggtagcgccaacttgtgacccaagggggagcaccaaagtgatggaacgtggct 639  T

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Target: scaffold0543 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0543
Description:

Target: scaffold0543; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 188
Target Start/End: Complemental strand, 230 - 162
Alignment:
Q  120 attgtttgctgagttgattaacaccaacttgtaacccatgtgggagcatcaaggtgatggaacatggct 188  Q
    ||||||||||||||||  || | ||||||||| ||||| ||||||||| ||| |||||||||| |||||    
T  230 attgtttgctgagttggatagcgccaacttgtgacccaagtgggagcaccaaagtgatggaacgtggct 162  T

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Target: scaffold0492 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0492
Description:

Target: scaffold0492; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 188
Target Start/End: Original strand, 613 - 681
Alignment:
Q  120 attgtttgctgagttgattaacaccaacttgtaacccatgtgggagcatcaaggtgatggaacatggct 188  Q
    ||||||||||||||||  || | ||||||||| ||||| ||||||||| ||| |||||||||| |||||    
T  613 attgtttgctgagttgggtagcgccaacttgtgacccaagtgggagcaccaaagtgatggaacgtggct 681  T

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Target: scaffold0492; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 188
Target Start/End: Complemental strand, 1776 - 1708
Alignment:
Q  120 attgtttgctgagttgattaacaccaacttgtaacccatgtgggagcatcaaggtgatggaacatggct 188  Q
    ||||||||||||||||  || | ||||||||| ||||| ||||||||| ||| |||||||||| |||||    
T  1776 attgtttgctgagttgggtagcgccaacttgtgacccaagtgggagcaccaaagtgatggaacgtggct 1708  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 188
Target Start/End: Complemental strand, 15830202 - 15830134
Alignment:
Q  120 attgtttgctgagttgattaacaccaacttgtaacccatgtgggagcatcaaggtgatggaacatggct 188  Q
    ||||||||||||||||  || | ||||||||| ||||| ||||||||| ||| |||||||||| |||||    
T  15830202 attgtttgctgagttgggtagcgccaacttgtgacccaagtgggagcaccaaagtgatggaacgtggct 15830134  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 188
Target Start/End: Complemental strand, 46621652 - 46621608
Alignment:
Q  144 caacttgtaacccatgtgggagcatcaaggtgatggaacatggct 188  Q
    |||||||||||||| ||||| |||| |||||||||||||||||||    
T  46621652 caacttgtaacccaagtgggggcatgaaggtgatggaacatggct 46621608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 188
Target Start/End: Complemental strand, 15831930 - 15831862
Alignment:
Q  120 attgtttgctgagttgattaacaccaacttgtaacccatgtgggagcatcaaggtgatggaacatggct 188  Q
    ||||||||||||||||  || | ||||||||| ||||| | ||||||| ||| |||||||||| |||||    
T  15831930 attgtttgctgagttgggtagcgccaacttgtgacccaagggggagcaccaaagtgatggaacgtggct 15831862  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 188
Target Start/End: Complemental strand, 15833657 - 15833589
Alignment:
Q  120 attgtttgctgagttgattaacaccaacttgtaacccatgtgggagcatcaaggtgatggaacatggct 188  Q
    ||||||||||||||||  || | ||||||||| ||||| | ||||||| ||| |||||||||| |||||    
T  15833657 attgtttgctgagttgggtagcgccaacttgtgacccaagggggagcaccaaagtgatggaacgtggct 15833589  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 188
Target Start/End: Complemental strand, 46627385 - 46627341
Alignment:
Q  144 caacttgtaacccatgtgggagcatcaaggtgatggaacatggct 188  Q
    ||||||||||| || ||||| |||| |||||||||||||||||||    
T  46627385 caacttgtaactcaagtgggggcatgaaggtgatggaacatggct 46627341  T

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