View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11553_low_18 (Length: 220)
Name: NF11553_low_18
Description: NF11553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11553_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 112 - 196
Target Start/End: Complemental strand, 40921530 - 40921446
Alignment:
| Q |
112 |
cacctaactgctgctataacaactataactacccacataacaggcccctaacagcaagcaaaaagccaataaacctgtggccaaa |
196 |
Q |
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| T |
40921530 |
cacctaactgctgctataacaactataaccacccacacaacaggcccctaacagcaagcaaaaagccaataaacctgcggccaaa |
40921446 |
T |
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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 40921639 - 40921589
Alignment:
| Q |
1 |
atcagctaaatttattaagcagaactaggtgtaagaagcaactaagaacgct |
52 |
Q |
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| T |
40921639 |
atcagctaaatt-attaagcagaactaggtgtaagaagcacctaagaacgct |
40921589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 19604598 - 19604547
Alignment:
| Q |
1 |
atcagctaaatttattaagcagaactaggtgtaagaagcaactaagaacgct |
52 |
Q |
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| T |
19604598 |
atcagataaatttattaagcagaacttggtgtaagaagcacccaagaacgct |
19604547 |
T |
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