View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11553_low_4 (Length: 557)
Name: NF11553_low_4
Description: NF11553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11553_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 4365809 - 4366051
Alignment:
| Q |
18 |
cactgaacatgttttatgcagtagttttcatgctttctctagttcatctaaataagtatctttctttctttttaagcatgtacaaagttcatatccggaa |
117 |
Q |
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| T |
4365809 |
cactgaacatgttttgtgcagtagttttcaggctttctctagttcatctaaacaagtatctttctttctttttaagcatgtacaaagttcatatccggaa |
4365908 |
T |
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| Q |
118 |
ccaaacttcaagttcatctccgtaatgatttatttcagttataaactaactcatacccatcaaactcaattaaaaacaacatgcaaactaattatcattt |
217 |
Q |
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| T |
4365909 |
ccaaacttcaagttcatatccgtaatgatttatttcagttataaactaactcatacccatcaaactcaattaaaaacaacatgcaaactaattatcattt |
4366008 |
T |
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| Q |
218 |
tgtatgcaataaaaatcagctcacaacaacaaacattcaatca |
260 |
Q |
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| T |
4366009 |
tgtatgcaacaaaaatcatctcataacaacaaacattcaatca |
4366051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 329 - 540
Target Start/End: Original strand, 4366050 - 4366261
Alignment:
| Q |
329 |
caccctatagatgttttagggaagggattctatgttaccttaggctctcttaagaagagattgatgaaatttccaaattgactttgatctctacaattcc |
428 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4366050 |
caccctatagatgttttaaggaagggattctatgttaccttaggctctcttaagaagagattgatgaaatttccaaattgactttgatctctacaattcc |
4366149 |
T |
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| Q |
429 |
aagcttccattctcgtgacttctcttcatctctaattacttcttctccttctaagttgctgcccacatagggagaattaaggggtttgaattttgattct |
528 |
Q |
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| T |
4366150 |
aagcttccattctcgtgacttctcttcatctctaattacttcttctccttctaagttgctgcccacatagggagaattaaggggtttgaattttgattct |
4366249 |
T |
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| Q |
529 |
tctcaattgatg |
540 |
Q |
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| T |
4366250 |
tctctattgatg |
4366261 |
T |
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