View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11553_low_8 (Length: 363)
Name: NF11553_low_8
Description: NF11553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11553_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 71 - 251
Target Start/End: Original strand, 40441949 - 40442133
Alignment:
| Q |
71 |
tgttattgctccttggtcagtcatttatagtcatctaactggtttagatcctacattctggtc----tctctgcaatctgcgttatagaacctttgatag |
166 |
Q |
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| T |
40441949 |
tgttattgctccttggtcggtcatgcatagtcatctaactggtttatatcctgcattctggtaggtatctctgcattctgcattatagaacctttggtag |
40442048 |
T |
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| Q |
167 |
gttaagatttaagctttgaaacatctcgactcattattattgcttgattatattgatgcacctttaattacatacaaattttctt |
251 |
Q |
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| T |
40442049 |
gttaagattcaagctttgaaacacctcgactcattatcattgcttgattatactgatgcatctttacttgcgtacaaattttctt |
40442133 |
T |
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Target: chr6 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 153 - 251
Target Start/End: Original strand, 18812828 - 18812926
Alignment:
| Q |
153 |
agaacctttgataggttaagatttaagctttgaaacatctcgactcattattattgcttgattatattgatgcacctttaattacatacaaattttctt |
251 |
Q |
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| T |
18812828 |
agaacatttgataggttaagatttaagctttgaaacatctcgactcattattattgcttgattatattgatgcacctttacttacatacaaattttctt |
18812926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 250 - 345
Target Start/End: Original strand, 18813256 - 18813351
Alignment:
| Q |
250 |
tttcatatattttatgaactaaatcggatagtttaggaactaaattgatgatttattcttcatctcatcgtttgagctaattttggacatatatat |
345 |
Q |
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| T |
18813256 |
tttcatatgctttttgaactaaatcggatagtttagggactaaattgatgatttattcttcatctcatcctttgagctaattttggacatatatat |
18813351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 261 - 345
Target Start/End: Complemental strand, 48249675 - 48249590
Alignment:
| Q |
261 |
ttatgaactaaatcggatagtttaggaactaaattgatgatttattc-ttcatctcatcgtttgagctaattttggacatatatat |
345 |
Q |
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| T |
48249675 |
ttatgaactaaataggatagtttagggactaaattgatgatttattctttaatctcaccctttgagctaattttggacatatatat |
48249590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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