View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11554_high_17 (Length: 271)
Name: NF11554_high_17
Description: NF11554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11554_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 45445199 - 45444946
Alignment:
| Q |
1 |
gacaatgctcgaatcatttatcaagtttgtaccaacttattttaaatatttaggcatttatttctggttgtttgt-atactttagacgcatcagattcat |
99 |
Q |
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| T |
45445199 |
gacaatgctcgaatcatttatcaagtttgtaccaacttattttaaatatttaggcatttatttctggttgtttgtaatactttagacgcatcaaattcat |
45445100 |
T |
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| Q |
100 |
tctcttccatctaaggctctgatggcatagtggaggataattcataatatttggtggatctctttaatctaatgatggnnnnnnnttgtgtatatgacat |
199 |
Q |
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| T |
45445099 |
tctctttcatctaaggctctgatggc--agtggaggataattcataatatttggtggatctctttaatctaatgatggaaaaaaattgtgtatatgacat |
45445002 |
T |
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| Q |
200 |
ttagtttagttgtgcatattagaaaaagccgtatttaatatattttaagaataaaa |
255 |
Q |
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| T |
45445001 |
ttagtttagttgtgcatattagaaaaagccgtatttaatatattttaagaataaaa |
45444946 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 51582598 - 51582557
Alignment:
| Q |
11 |
gaatcatttatcaagtttgtaccaacttattttaaatattta |
52 |
Q |
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| T |
51582598 |
gaatcatttatcaagtttgcaccggcttattttaaatattta |
51582557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 121
Target Start/End: Original strand, 45341420 - 45341465
Alignment:
| Q |
76 |
atactttagacgcatcagattcattctcttccatctaaggctctga |
121 |
Q |
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| T |
45341420 |
atactttagaggcatcaaattcattctctttcatctgaggctctga |
45341465 |
T |
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