View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11554_high_2 (Length: 720)
Name: NF11554_high_2
Description: NF11554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11554_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 20 - 432
Target Start/End: Original strand, 36601676 - 36602086
Alignment:
| Q |
20 |
aagattgtatacaataatacaaaagattctcaaaagatatttctagctactggtctaacttacagtaagaacatgtattaacaaaacaaagagaatgttt |
119 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
36601676 |
aagattgtatacaataatacaaaagattctcaaaatatattgctagctactggtctaacttacggtaagaacatgtattaacaaaacaaaga--atgttt |
36601773 |
T |
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| Q |
120 |
aacatataacacacaacaacataaaatatttcatgtgttaagtaatactacagataaattatttcctcattatatccgacgaacaagttaaataaaaacc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36601774 |
aacatataacacacaacaacataaaatatttcatgtgttaagtaatactacagataaattatttcctcattatatccgacgaacaagttaaataaaaacc |
36601873 |
T |
|
| Q |
220 |
tgtggatcaaaattctctgtgagtagtatattttctgccttaatatctctatgaattattcgcctttgacaattctcatgcaaatagagaagaccatcag |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36601874 |
tgtggatcaaaattctctgtgagtagtatattttctgccttaatatctctatgaattattcgcctttgacaattctcatgcaaatagagaagaccatcag |
36601973 |
T |
|
| Q |
320 |
caattccaagagcaactttataccttttactccaatccaatttggttttatctgaacctgaaatacatcatgagggaataagctataagtacatttaaag |
419 |
Q |
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| T |
36601974 |
caattccgagagcaactttataccttttactccaatccaatttggttttatctgaacctgaaatacatcatgagggaataagctataagtacatttaaag |
36602073 |
T |
|
| Q |
420 |
ttgaaagcatgtt |
432 |
Q |
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| T |
36602074 |
ttgaaagtatgtt |
36602086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 433 - 710
Target Start/End: Original strand, 36602121 - 36602398
Alignment:
| Q |
433 |
aatatgtgtgcgagggttgtaaaccctcgagtattgagtttcattccatttgatataaaaacaaaataagttcaaaagtgattgtcatcatgagagagtt |
532 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
36602121 |
aatatgtgtgcgagggttgtaaaccctcgagtattgagtttgattccatttgatatgaaaacaaaataagtttaaaagtgattgtcatcatgagagagtt |
36602220 |
T |
|
| Q |
533 |
caaagtatctacaaaccatgaagaacatatcctaaacttcccagtgtagacaattcgaagacaagatgcatttctccctctacacaacatccaacaagct |
632 |
Q |
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| T |
36602221 |
caaagtatctacaaaccatgaagaacgtatcctaaacttcccagtgtagacaattcgaagacaagatgcatttctccctctacacaacatccaacaagct |
36602320 |
T |
|
| Q |
633 |
ttgcagtattaggatgatcaacatgagcaataactcctaactcagatagaaagccagctgtcttttcatctgtgctcc |
710 |
Q |
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| T |
36602321 |
ttgcggtattaggatgatcaacatgagcaataactcctaactcagatagaaagccagctgtcttttcatctgtgctcc |
36602398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 8e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 217 - 323
Target Start/End: Complemental strand, 47015643 - 47015537
Alignment:
| Q |
217 |
acctgtggatcaaaattctctgtgagtagtatattttctgccttaatatctctatgaattattcgcctttgacaattctcatgcaaatagagaagaccat |
316 |
Q |
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||||| || ||||| ||||||||||| || | ||| ||||| ||||||||||||||||| ||||||||||||||||||||||| | ||| || || |||| |
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| T |
47015643 |
acctgaggctcaaagttctctgtgagaagaacattctctgctttaatatctctatgaatgattcgcctttgacaattctcatgaagatataggagtccat |
47015544 |
T |
|
| Q |
317 |
cagcaat |
323 |
Q |
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||||||| |
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| T |
47015543 |
cagcaat |
47015537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 593 - 685
Target Start/End: Complemental strand, 47014181 - 47014089
Alignment:
| Q |
593 |
acaagatgcatttctccctctacacaacatccaacaagctttgcagtattaggatgatcaacatgagcaataactcctaactcagatagaaag |
685 |
Q |
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||||| ||||||||||| ||||||| |||||||| ||| | ||||| |||||||| | | ||||||||||| |||| ||||||||||||| |
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| T |
47014181 |
acaaggtgcatttctccttctacaccacatccaataagtctggcagtgttaggatggtttagatgagcaataatgcctagctcagatagaaag |
47014089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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