View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11554_high_21 (Length: 240)
Name: NF11554_high_21
Description: NF11554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11554_high_21 |
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| [»] scaffold0590 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 4954674 - 4954452
Alignment:
| Q |
1 |
catccaaggaaaattaaaaaacataaaaccttaatgttagcctcttaaaattttccaaaacttttttgatcaaatcttttgtgctatatatatgttttca |
100 |
Q |
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| T |
4954674 |
catccaaggaaaattaaaaaacataaaaccttaatgttagcctcttaaaattttccaaaacttttttgatcaaatcttttgtgctatatatatgttttca |
4954575 |
T |
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| Q |
101 |
ttattatcatgtcatgcaagtgggccataagaatagacaaattagcaaaataacaaacctatcatcaataactatattcaaatcatgcatattgaaaaga |
200 |
Q |
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| T |
4954574 |
ttattatcatgtcatgcaagtgggccataagaatagacaaattagcaaaataacaaacctatcatcaataactatattcaaatcatgcatattgaaaaga |
4954475 |
T |
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| Q |
201 |
tacttctactttttgttgccttg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
4954474 |
tacttctactttttgttgccttg |
4954452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 107 - 223
Target Start/End: Original strand, 10478856 - 10478972
Alignment:
| Q |
107 |
tcatgtcatgcaagtgggccataagaatagacaaattagcaaaataacaaacctatcatcaataactatattcaaatcatgcatattgaaaagatacttc |
206 |
Q |
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| T |
10478856 |
tcatgtcatgcaagtgggtcataagaagagacaaattagcaaaataacaaagctatcatcaataactatattcaaatcatgcatattgaaaagatactgc |
10478955 |
T |
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| Q |
207 |
tactttttgttgccttg |
223 |
Q |
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| T |
10478956 |
tactttttgttgccttg |
10478972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 93
Target Start/End: Original strand, 10476440 - 10476471
Alignment:
| Q |
62 |
ttttttgatcaaatcttttgtgctatatatat |
93 |
Q |
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| T |
10476440 |
ttttttgatcaaatcttttgtgctatatatat |
10476471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0590 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: scaffold0590
Description:
Target: scaffold0590; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 4445 - 4543
Alignment:
| Q |
1 |
catccaaggaaaattaaaaaacataaaaccttaatgttagcctcttaaaattttccaaaacttttttgatcaaatcttttgtgctatatatatgttttca |
100 |
Q |
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|||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4445 |
catccaaggaaagttaaaaaacataaaacattaatgt----ctcttaaaattttccaaaacttttttgatcaaatcttttgtgctatatatatcttttca |
4540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0590; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 4544 - 4603
Alignment:
| Q |
164 |
atcaataactatattcaaatcatgcatattgaaaagatacttctactttttgttgccttg |
223 |
Q |
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||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4544 |
atcaataacaatattcaaatcatgcatattgaaaagatactgctactttttgttgccttg |
4603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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