View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11554_high_6 (Length: 447)
Name: NF11554_high_6
Description: NF11554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11554_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 18 - 432
Target Start/End: Original strand, 44828585 - 44828998
Alignment:
| Q |
18 |
atattaatcttgtaaattactctacgttacctgaatttctgaactggtacctccgatgacatccttaacaatactcaacacttcctcagttaaaccatgt |
117 |
Q |
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| T |
44828585 |
atattaatcttgtaaattactctacattacctgaatttctgaactggtacctccgatgacatccttaacaatactcaacacttcctcagttaaaccatgt |
44828684 |
T |
|
| Q |
118 |
tcatcaaataccgtcctaatatattaaatagtcacaagataatatgtttagttaaggagaaacttaaattattttaatgaagtagataaaatgatgcaca |
217 |
Q |
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| T |
44828685 |
tcatcaaataccgtcctaatatattaaatagtcacaagataatatgtttagttaaggagaaacttaaattattttaatgaagtagataaaatgatgcaca |
44828784 |
T |
|
| Q |
218 |
ataagtagaannnnnnnggaggtccagcaaaacatgtattacatatgaattaaatttgaaatttaagaaatttacatctttaactctactgataaattaa |
317 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
44828785 |
ataagtagaatttttttggaggtccagcaaaacatgtattacatatcaattaaatttgaaatttaag-aatttacatctttaattctactgataaattaa |
44828883 |
T |
|
| Q |
318 |
atagaacttctaaatgtaagtataataacatgtacattttgatttacctaataaatcggtcttcaccctgagaaaatttacgttcaacttccttgtcctc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44828884 |
atagaacttctaaatgtaagtataataacatgtacattttgatttacctaataaatcggtcttcaccctgagaaaatttacgttcaacttccttgtcctc |
44828983 |
T |
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| Q |
418 |
gtttgactcttcatc |
432 |
Q |
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| T |
44828984 |
gtttgactcttcatc |
44828998 |
T |
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