View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11554_high_9 (Length: 401)

Name: NF11554_high_9
Description: NF11554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11554_high_9
NF11554_high_9
[»] scaffold0257 (2 HSPs)
scaffold0257 (1-212)||(18675-18886)
scaffold0257 (269-384)||(18943-19059)
[»] chr3 (28 HSPs)
chr3 (1-62)||(28083100-28083161)
chr3 (1-62)||(28135472-28135533)
chr3 (61-132)||(28149344-28149415)
chr3 (304-369)||(28136277-28136341)
chr3 (1-57)||(28161448-28161504)
chr3 (1-57)||(28185290-28185346)
chr3 (152-211)||(38832958-38833017)
chr3 (303-369)||(28185824-28185889)
chr3 (1-62)||(28506906-28506967)
chr3 (324-384)||(26127525-26127585)
chr3 (324-384)||(26177575-26177635)
chr3 (1-60)||(18079162-18079221)
chr3 (301-369)||(28161778-28161846)
chr3 (89-130)||(28185372-28185413)
chr3 (14-62)||(8539640-8539688)
chr3 (14-58)||(28055908-28055952)
chr3 (14-58)||(28066333-28066377)
chr3 (77-132)||(27919936-27919991)
chr3 (23-62)||(28151336-28151375)
chr3 (74-132)||(27390569-27390627)
chr3 (161-211)||(40892805-40892855)
chr3 (150-211)||(9099178-9099239)
chr3 (1-62)||(17745002-17745063)
chr3 (1-62)||(19046322-19046383)
chr3 (2-59)||(27979970-27980027)
chr3 (171-204)||(46476510-46476543)
chr3 (324-380)||(26110447-26110503)
chr3 (73-125)||(27249896-27249948)
[»] chr1 (6 HSPs)
chr1 (152-208)||(43638397-43638453)
chr1 (171-211)||(14171836-14171876)
chr1 (152-211)||(963956-964015)
chr1 (151-204)||(42887974-42888027)
chr1 (171-211)||(1411598-1411638)
chr1 (175-211)||(26127286-26127322)
[»] chr2 (4 HSPs)
chr2 (152-211)||(45716500-45716559)
chr2 (152-211)||(8329653-8329712)
chr2 (152-212)||(15988885-15988945)
chr2 (171-211)||(33635713-33635753)
[»] chr8 (9 HSPs)
chr8 (171-211)||(27924503-27924543)
chr8 (159-210)||(18087247-18087298)
chr8 (150-211)||(16938898-16938959)
chr8 (152-211)||(42563194-42563253)
chr8 (152-211)||(44362292-44362351)
chr8 (171-212)||(30157745-30157786)
chr8 (171-211)||(468134-468174)
chr8 (171-211)||(4366322-4366362)
chr8 (152-212)||(34612227-34612287)
[»] chr4 (7 HSPs)
chr4 (6-62)||(9328781-9328837)
chr4 (6-62)||(9382558-9382614)
chr4 (178-212)||(21139318-21139352)
chr4 (152-212)||(53374996-53375056)
chr4 (97-132)||(9328716-9328751)
chr4 (97-132)||(9382493-9382528)
chr4 (152-208)||(47089213-47089269)
[»] chr5 (2 HSPs)
chr5 (153-212)||(19366808-19366867)
chr5 (170-211)||(19336835-19336876)
[»] chr7 (4 HSPs)
chr7 (152-209)||(45879115-45879172)
chr7 (152-211)||(6221098-6221157)
chr7 (1-46)||(8692622-8692667)
chr7 (152-212)||(34224321-34224381)
[»] chr6 (2 HSPs)
chr6 (150-211)||(31330520-31330581)
chr6 (179-212)||(30533715-30533748)
[»] scaffold0007 (1 HSPs)
scaffold0007 (152-208)||(185503-185559)
[»] scaffold0009 (1 HSPs)
scaffold0009 (152-211)||(140312-140371)
[»] scaffold0735 (1 HSPs)
scaffold0735 (151-204)||(927-980)
[»] scaffold0191 (1 HSPs)
scaffold0191 (171-211)||(4563-4603)


Alignment Details
Target: scaffold0257 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 18675 - 18886
Alignment:
Q  1 taaacatcttttcaattttaagcaggttagtgaaataagtgttgaaaaaggaactacatcaggtccattatgtacttctaaggagaaaacatcttcacag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18675 taaacatcttttcaattttaagcaggttagtgaaataagtgttgaaaaaggaactacatcaggtccattatgtacttctaaggagaaaacatcttcacag 18774  T
Q  101 gtgagtatattttatttaacaaagccttcaaaatgctaaaagaaccaaagattaaggaaatataaacgggaatattgtcttgaaaattatgtattctact 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18775 gtgagtatattttatttaacaaagccttcaaaaagctaaaagaaccaaagattaaggaaatataaacgggaatattgtcttgaaaattatgtattctact 18874  T
Q  201 ttttgaaagttg 212  Q
    ||||||||||||    
T  18875 ttttgaaagttg 18886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 269 - 384
Target Start/End: Original strand, 18943 - 19059
Alignment:
Q  269 acaagtgtcacagggacaccgattgacaagacccaaaa-aatatattaaggacttcatgatgatatcatttgtttatttgaatttgtgtaggaatatggt 367  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  18943 acaagtgtcacagggacaccgactgacaagacccaaaaaaatatattaaggacttcatgatgatatcatttgtttatttgaatttgtgtaggaatatgac 19042  T
Q  368 gatggacaaatagccat 384  Q
    |||||||||||||||||    
T  19043 gatggacaaatagccat 19059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 28083100 - 28083161
Alignment:
Q  1 taaacatcttttcaattttaagcaggttagtgaaataagtgttgaaaaaggaactacatcag 62  Q
    |||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  28083100 taaacatctttctaattttaagcaggttagtgaaataagtgttgaagaaggaactacatcag 28083161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 28135472 - 28135533
Alignment:
Q  1 taaacatcttttcaattttaagcaggttagtgaaataagtgttgaaaaaggaactacatcag 62  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  28135472 taaaaatcttttaaattttaagcaggttagtgaaataagtgttgaagaaggaactacatcag 28135533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 61 - 132
Target Start/End: Original strand, 28149344 - 28149415
Alignment:
Q  61 aggtccattatgtacttctaaggagaaaacatcttcacaggtgagtatattttatttaacaaagccttcaaa 132  Q
    ||||||||||| |||||||||| | ||||||||||||||||||||| |||| ||| ||||||||||||||||    
T  28149344 aggtccattatctacttctaagcataaaacatcttcacaggtgagtttattatatataacaaagccttcaaa 28149415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 304 - 369
Target Start/End: Original strand, 28136277 - 28136341
Alignment:
Q  304 aaaaatatattaaggacttcatgatgatatcatttgtttatttgaatttgtgtaggaatatggtga 369  Q
    ||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  28136277 aaaaaaatattaag-acttgatgatgatatcatttgtttatttgaatttgtgtaggaatgtggtga 28136341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 28161448 - 28161504
Alignment:
Q  1 taaacatcttttcaattttaagcaggttagtgaaataagtgttgaaaaaggaactac 57  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||    
T  28161448 taaacatctttttaattttaagcaggttagcgaaataagtgttgaagaaggaactac 28161504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 28185290 - 28185346
Alignment:
Q  1 taaacatcttttcaattttaagcaggttagtgaaataagtgttgaaaaaggaactac 57  Q
    |||||||||||| ||||||||||||||||| |||||||||||| || ||||||||||    
T  28185290 taaacatctttttaattttaagcaggttagcgaaataagtgttcaagaaggaactac 28185346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 152 - 211
Target Start/End: Original strand, 38832958 - 38833017
Alignment:
Q  152 ttaaggaaatataaacgggaatattgtcttgaaaattatgtattctactttttgaaagtt 211  Q
    ||||| || |||||| || |||||||| ||||||||||||||||||||||||||||||||    
T  38832958 ttaagaaattataaaaggaaatattgtattgaaaattatgtattctactttttgaaagtt 38833017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 303 - 369
Target Start/End: Original strand, 28185824 - 28185889
Alignment:
Q  303 aaaaaatatattaaggacttcatgatgatatcatttgtttatttgaatttgtgtaggaatatggtga 369  Q
    |||||| |||||||| |||||||||||||||||||||| | ||||||||| ||||||||||| ||||    
T  28185824 aaaaaacatattaag-acttcatgatgatatcatttgtatgtttgaatttttgtaggaatatagtga 28185889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 28506967 - 28506906
Alignment:
Q  1 taaacatcttttcaattttaagcaggttagtgaaataagtgttgaaaaaggaactacatcag 62  Q
    |||||||| ||  ||||||||||||||||||||||||||||| ||||||||  |||||||||    
T  28506967 taaacatccttgtaattttaagcaggttagtgaaataagtgtcgaaaaaggtgctacatcag 28506906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 324 - 384
Target Start/End: Complemental strand, 26127585 - 26127525
Alignment:
Q  324 atgatgatatcatttgtttatttgaatttgtgtaggaatatggtgatggacaaatagccat 384  Q
    ||||| |||||||||||| |||||||| |||||||||| |||||||| | |||||||||||    
T  26127585 atgataatatcatttgttgatttgaatctgtgtaggaagatggtgatagccaaatagccat 26127525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 324 - 384
Target Start/End: Complemental strand, 26177635 - 26177575
Alignment:
Q  324 atgatgatatcatttgtttatttgaatttgtgtaggaatatggtgatggacaaatagccat 384  Q
    ||||| |||||||||||| |||||||| |||||||||| |||||||| | |||||||||||    
T  26177635 atgataatatcatttgttgatttgaatctgtgtaggaagatggtgatagccaaatagccat 26177575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 18079221 - 18079162
Alignment:
Q  1 taaacatcttttcaattttaagcaggttagtgaaataagtgttgaaaaaggaactacatc 60  Q
    |||||||| ||  ||||||||||||||||  |||||||||||||||||||||||| ||||    
T  18079221 taaacatccttctaattttaagcaggttaacgaaataagtgttgaaaaaggaacttcatc 18079162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 369
Target Start/End: Original strand, 28161778 - 28161846
Alignment:
Q  301 ccaaaaaat-atattaaggacttcatgatgatatcatttgtttatttgaatttgtgtaggaatatggtga 369  Q
    ||||||||| |||||||| |||||||||||||||||||||| | ||||||||| ||||| ||||| ||||    
T  28161778 ccaaaaaatcatattaag-acttcatgatgatatcatttgtatgtttgaatttttgtagtaatatagtga 28161846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 89 - 130
Target Start/End: Original strand, 28185372 - 28185413
Alignment:
Q  89 acatcttcacaggtgagtatattttatttaacaaagccttca 130  Q
    ||||| |||||||||||| |||||||||||||||||||||||    
T  28185372 acatcatcacaggtgagtttattttatttaacaaagccttca 28185413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 8539688 - 8539640
Alignment:
Q  14 aattttaagcaggttagtgaaataagtgttgaaaaaggaactacatcag 62  Q
    ||||||||||||| |  |||||||||||||||| |||||||||||||||    
T  8539688 aattttaagcagggtgttgaaataagtgttgaagaaggaactacatcag 8539640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 28055908 - 28055952
Alignment:
Q  14 aattttaagcaggttagtgaaataagtgttgaaaaaggaactaca 58  Q
    ||||||||||||||||| |||||||||||| || |||||||||||    
T  28055908 aattttaagcaggttagcgaaataagtgttcaagaaggaactaca 28055952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 28066333 - 28066377
Alignment:
Q  14 aattttaagcaggttagtgaaataagtgttgaaaaaggaactaca 58  Q
    ||||||||||||||||| |||||||||||| || |||||||||||    
T  28066333 aattttaagcaggttagcgaaataagtgttcaagaaggaactaca 28066377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 77 - 132
Target Start/End: Original strand, 27919936 - 27919991
Alignment:
Q  77 tctaaggagaaaacatcttcacaggtgagtatattttatttaacaaagccttcaaa 132  Q
    |||||| | |||||| |||||||||| ||| |||||||||||| ||||||||||||    
T  27919936 tctaagcataaaacaacttcacaggtcagtttattttatttaataaagccttcaaa 27919991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 28151336 - 28151375
Alignment:
Q  23 caggttagtgaaataagtgttgaaaaaggaactacatcag 62  Q
    |||||||| ||||||||||||||| |||||||||||||||    
T  28151336 caggttagcgaaataagtgttgaagaaggaactacatcag 28151375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 132
Target Start/End: Complemental strand, 27390627 - 27390569
Alignment:
Q  74 acttctaaggagaaaacatcttcacaggtgagtatattttatttaacaaagccttcaaa 132  Q
    ||||||||||| | |||| |||||||||||| | |||||||| |||||| |||||||||    
T  27390627 acttctaaggaaataacaacttcacaggtgattttattttatgtaacaatgccttcaaa 27390569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 211
Target Start/End: Original strand, 40892805 - 40892855
Alignment:
Q  161 tataaacgggaatattgtcttgaaaattatgtattctactttttgaaagtt 211  Q
    |||||| || |||||| ||||| ||||| ||||||||||||||||||||||    
T  40892805 tataaaaggaaatattttcttggaaattgtgtattctactttttgaaagtt 40892855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 211
Target Start/End: Complemental strand, 9099239 - 9099178
Alignment:
Q  150 gattaaggaaatataaacgggaatattgtcttgaaaattatgtattctactttttgaaagtt 211  Q
    |||||||||| |||||| || |||||||| ||| ||||  ||||||| ||||||||||||||    
T  9099239 gattaaggaattataaaaggaaatattgtattggaaatcgtgtattcaactttttgaaagtt 9099178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 17745063 - 17745002
Alignment:
Q  1 taaacatcttttcaattttaagcaggttagtgaaataagtgttgaaaaaggaactacatcag 62  Q
    ||||||||| || |||| |||||||| ||  ||||||||||||||| ||||||| |||||||    
T  17745063 taaacatctgtttaattataagcagggtaacgaaataagtgttgaagaaggaaccacatcag 17745002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 19046383 - 19046322
Alignment:
Q  1 taaacatcttttcaattttaagcaggttagtgaaataagtgttgaaaaaggaactacatcag 62  Q
    ||||||||| || |||| |||||||| ||  ||||||||||||||| ||||||| |||||||    
T  19046383 taaacatctgtttaattataagcagggtaacgaaataagtgttgaagaaggaaccacatcag 19046322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 27979970 - 27980027
Alignment:
Q  2 aaacatcttttcaattttaagcaggttagtgaaataagtgttgaaaaaggaactacat 59  Q
    ||||||| ||| ||||||||||||| ||  || |||||||||||| ||||||||||||    
T  27979970 aaacatccttttaattttaagcagggtatcgagataagtgttgaagaaggaactacat 27980027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 204
Target Start/End: Complemental strand, 46476543 - 46476510
Alignment:
Q  171 aatattgtcttgaaaattatgtattctacttttt 204  Q
    |||||| |||||||||||||||||||||||||||    
T  46476543 aatattctcttgaaaattatgtattctacttttt 46476510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 380
Target Start/End: Complemental strand, 26110503 - 26110447
Alignment:
Q  324 atgatgatatcatttgtttatttgaatttgtgtaggaatatggtgatggacaaatag 380  Q
    ||||| |||||||||||| |||||||| | |||||||| |||||||| | |||||||    
T  26110503 atgataatatcatttgttgatttgaatctatgtaggaagatggtgatagccaaatag 26110447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 27249896 - 27249948
Alignment:
Q  73 tacttctaaggagaaaacatcttcacaggtgagtatattttatttaacaaagc 125  Q
    |||||||||| | |||||| |||||||||||||| ||||| || |||||||||    
T  27249896 tacttctaagcataaaacaacttcacaggtgagtttatttcatgtaacaaagc 27249948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 152 - 208
Target Start/End: Complemental strand, 43638453 - 43638397
Alignment:
Q  152 ttaaggaaatataaacgggaatattgtcttgaaaattatgtattctactttttgaaa 208  Q
    |||||||| |||||| || |||||||||||||||||| |||||||||||||||||||    
T  43638453 ttaaggaattataaaaggaaatattgtcttgaaaattgtgtattctactttttgaaa 43638397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 14171836 - 14171876
Alignment:
Q  171 aatattgtcttgaaaattatgtattctactttttgaaagtt 211  Q
    |||||||||||||||||| |||||| |||||||||||||||    
T  14171836 aatattgtcttgaaaattgtgtattttactttttgaaagtt 14171876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 152 - 211
Target Start/End: Original strand, 963956 - 964015
Alignment:
Q  152 ttaaggaaatataaacgggaatattgtcttgaaaattatgtattctactttttgaaagtt 211  Q
    |||||||| |||||  || |||||||||||| ||||| ||||||||||||||| ||||||    
T  963956 ttaaggaattataataggaaatattgtcttggaaattgtgtattctactttttcaaagtt 964015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 204
Target Start/End: Original strand, 42887974 - 42888027
Alignment:
Q  151 attaaggaaatataaacgggaatattgtcttgaaaattatgtattctacttttt 204  Q
    ||||| ||| |||||| || |||||| |||||||||||||||||| ||||||||    
T  42887974 attaaagaattataaaaggaaatattttcttgaaaattatgtattttacttttt 42888027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 211
Target Start/End: Complemental strand, 1411638 - 1411598
Alignment:
Q  171 aatattgtcttgaaaattatgtattctactttttgaaagtt 211  Q
    ||||||||||| |||||| ||||||||||||||||| ||||    
T  1411638 aatattgtcttaaaaattgtgtattctactttttgatagtt 1411598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 26127286 - 26127322
Alignment:
Q  175 ttgtcttgaaaattatgtattctactttttgaaagtt 211  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  26127286 ttgtcttggaaattgtgtattctactttttgaaagtt 26127322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 152 - 211
Target Start/End: Complemental strand, 45716559 - 45716500
Alignment:
Q  152 ttaaggaaatataaacgggaatattgtcttgaaaattatgtattctactttttgaaagtt 211  Q
    |||||||| |||||| || |||||||||||| |||||||| |||||||||||||||||||    
T  45716559 ttaaggaattataaaaggaaatattgtcttggaaattatggattctactttttgaaagtt 45716500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 152 - 211
Target Start/End: Original strand, 8329653 - 8329712
Alignment:
Q  152 ttaaggaaatataaacgggaatattgtcttgaaaattatgtattctactttttgaaagtt 211  Q
    |||||||| |||| | || |||||| | ||| ||||||||||||||||||||||||||||    
T  8329653 ttaaggaattatataaggaaatattattttggaaattatgtattctactttttgaaagtt 8329712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 212
Target Start/End: Complemental strand, 15988945 - 15988885
Alignment:
Q  152 ttaaggaaatataaacgggaatattgtcttgaaaattatgtattctactttttgaaagttg 212  Q
    |||||| ||||||||  | |||||| || |||||||| ||||||||||||| |||||||||    
T  15988945 ttaagggaatataaaacgaaatattctcatgaaaattgtgtattctactttctgaaagttg 15988885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 33635713 - 33635753
Alignment:
Q  171 aatattgtcttgaaaattatgtattctactttttgaaagtt 211  Q
    |||||||||||| ||||| ||||||||||||||| ||||||    
T  33635713 aatattgtcttggaaattgtgtattctactttttaaaagtt 33635753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 27924503 - 27924543
Alignment:
Q  171 aatattgtcttgaaaattatgtattctactttttgaaagtt 211  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  27924503 aatattatcttgaaaattatgtattctactttttgaaagtt 27924543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 159 - 210
Target Start/End: Complemental strand, 18087298 - 18087247
Alignment:
Q  159 aatataaacgggaatattgtcttgaaaattatgtattctactttttgaaagt 210  Q
    |||||||| || |||||| ||||||||||| |||||||||||||||||||||    
T  18087298 aatataaaaggaaatattctcttgaaaattgtgtattctactttttgaaagt 18087247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 150 - 211
Target Start/End: Original strand, 16938898 - 16938959
Alignment:
Q  150 gattaaggaaatataaacgggaatattgtcttgaaaattatgtattctactttttgaaagtt 211  Q
    |||||||||| |||||  || |||| ||||||||||||| ||||||||||||||| ||||||    
T  16938898 gattaaggaattataagaggaaatagtgtcttgaaaattgtgtattctacttttttaaagtt 16938959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 152 - 211
Target Start/End: Original strand, 42563194 - 42563253
Alignment:
Q  152 ttaaggaaatataaacgggaatattgtcttgaaaattatgtattctactttttgaaagtt 211  Q
    |||||||| |||||| || |||||||| ||||||||| || |||||| ||||||||||||    
T  42563194 ttaaggaattataaaaggaaatattgtattgaaaattctgcattctattttttgaaagtt 42563253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 152 - 211
Target Start/End: Original strand, 44362292 - 44362351
Alignment:
Q  152 ttaaggaaatataaacgggaatattgtcttgaaaattatgtattctactttttgaaagtt 211  Q
    |||||||| ||||||  | |||||||| ||||||||| ||||||||| ||||||||||||    
T  44362292 ttaaggaattataaaaagaaatattgtattgaaaattgtgtattctattttttgaaagtt 44362351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 212
Target Start/End: Complemental strand, 30157786 - 30157745
Alignment:
Q  171 aatattgtcttgaaaattatgtattctactttttgaaagttg 212  Q
    |||||| ||||| ||||| |||||||||||||||||||||||    
T  30157786 aatattttcttggaaattgtgtattctactttttgaaagttg 30157745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 211
Target Start/End: Complemental strand, 468174 - 468134
Alignment:
Q  171 aatattgtcttgaaaattatgtattctactttttgaaagtt 211  Q
    |||||||| ||||||||| | ||||||||||||||||||||    
T  468174 aatattgttttgaaaattgtctattctactttttgaaagtt 468134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 211
Target Start/End: Complemental strand, 4366362 - 4366322
Alignment:
Q  171 aatattgtcttgaaaattatgtattctactttttgaaagtt 211  Q
    |||||| | ||||||||||||||||||||||||| ||||||    
T  4366362 aatattattttgaaaattatgtattctactttttaaaagtt 4366322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 212
Target Start/End: Original strand, 34612227 - 34612287
Alignment:
Q  152 ttaaggaaatataaacgggaatattgtcttgaaaattatgtattctactttttgaaagttg 212  Q
    ||||||| ||||||| || |||||| |||||||||||||||||| ||   |||||||||||    
T  34612227 ttaaggagatataaaaggaaatattctcttgaaaattatgtattatatcctttgaaagttg 34612287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 9328837 - 9328781
Alignment:
Q  6 atcttttcaattttaagcaggttagtgaaataagtgttgaaaaaggaactacatcag 62  Q
    |||||||  |||||||||||||||| ||||||||||||||| |||||||| ||||||    
T  9328837 atcttttttattttaagcaggttagcgaaataagtgttgaagaaggaactgcatcag 9328781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 9382614 - 9382558
Alignment:
Q  6 atcttttcaattttaagcaggttagtgaaataagtgttgaaaaaggaactacatcag 62  Q
    |||||||  |||||||||||||||| ||||||||||||||| |||||||| ||||||    
T  9382614 atcttttttattttaagcaggttagcgaaataagtgttgaagaaggaactgcatcag 9382558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 21139352 - 21139318
Alignment:
Q  178 tcttgaaaattatgtattctactttttgaaagttg 212  Q
    |||||||||||||||||||||||||||||||||||    
T  21139352 tcttgaaaattatgtattctactttttgaaagttg 21139318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 212
Target Start/End: Complemental strand, 53375056 - 53374996
Alignment:
Q  152 ttaaggaaatataaacgggaatattgtcttgaaaattatgtattctactttttgaaagttg 212  Q
    |||||| |||||||| || |||||| ||||| ||||| ||||||||||||||| |||||||    
T  53375056 ttaagggaatataaaaggaaatattctcttggaaattgtgtattctactttttaaaagttg 53374996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 97 - 132
Target Start/End: Complemental strand, 9328751 - 9328716
Alignment:
Q  97 acaggtgagtatattttatttaacaaagccttcaaa 132  Q
    |||||||||| |||||||||||||||||||||||||    
T  9328751 acaggtgagtttattttatttaacaaagccttcaaa 9328716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 97 - 132
Target Start/End: Complemental strand, 9382528 - 9382493
Alignment:
Q  97 acaggtgagtatattttatttaacaaagccttcaaa 132  Q
    |||||||||| |||||||||||||||||||||||||    
T  9382528 acaggtgagtttattttatttaacaaagccttcaaa 9382493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 47089213 - 47089269
Alignment:
Q  152 ttaaggaaatataaacgggaatattgtcttgaaaattatgtattctactttttgaaa 208  Q
    |||||||| |||||| || ||| || ||||||||||| |||||| ||||||||||||    
T  47089213 ttaaggaattataaaaggaaatgttttcttgaaaattgtgtattttactttttgaaa 47089269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 19366867 - 19366808
Alignment:
Q  153 taaggaaatataaacgggaatattgtcttgaaaattatgtattctactttttgaaagttg 212  Q
    ||||||| |||||| || || ||||||||| ||||| |||||||||||||||||||||||    
T  19366867 taaggaattataaaaggaaacattgtcttggaaattgtgtattctactttttgaaagttg 19366808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 211
Target Start/End: Complemental strand, 19336876 - 19336835
Alignment:
Q  170 gaatattgtcttgaaaattatgtattctactttttgaaagtt 211  Q
    ||||||| |||| |||||| ||||||||||||||||||||||    
T  19336876 gaatattttcttaaaaattgtgtattctactttttgaaagtt 19336835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 152 - 209
Target Start/End: Original strand, 45879115 - 45879172
Alignment:
Q  152 ttaaggaaatataaacgggaatattgtcttgaaaattatgtattctactttttgaaag 209  Q
    |||||||| |||||| || ||| |||||||| ||||| ||||||||||||||||||||    
T  45879115 ttaaggaattataaaaggaaattttgtcttggaaattgtgtattctactttttgaaag 45879172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 152 - 211
Target Start/End: Complemental strand, 6221157 - 6221098
Alignment:
Q  152 ttaaggaaatataaacgggaatattgtcttgaaaattatgtattctactttttgaaagtt 211  Q
    |||||||| |||||| ||  ||||||||||| ||||| | ||||||||||||||||||||    
T  6221157 ttaaggaattataaaaggagatattgtcttggaaattgtatattctactttttgaaagtt 6221098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 8692667 - 8692622
Alignment:
Q  1 taaacatcttttcaattttaagcaggttagtgaaataagtgttgaa 46  Q
    |||||||||||| |||||||| |||||||| |||| ||||||||||    
T  8692667 taaacatctttttaattttaatcaggttagcgaaacaagtgttgaa 8692622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 212
Target Start/End: Complemental strand, 34224381 - 34224321
Alignment:
Q  152 ttaaggaaatataaacgggaatattgtcttgaaaattatgtattctactttttgaaagttg 212  Q
    |||||||| |||||| || | |||| ||||||||||| | ||||||||||||| |||||||    
T  34224381 ttaaggaattataaatggaattattctcttgaaaattgtatattctactttttcaaagttg 34224321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 150 - 211
Target Start/End: Original strand, 31330520 - 31330581
Alignment:
Q  150 gattaaggaaatataaacgggaatattgtcttgaaaattatgtattctactttttgaaagtt 211  Q
    |||||| ||| |||||  || ||| |||||||||||||| ||||||||||||||||||||||    
T  31330520 gattaaagaattataagaggaaattttgtcttgaaaattgtgtattctactttttgaaagtt 31330581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 212
Target Start/End: Complemental strand, 30533748 - 30533715
Alignment:
Q  179 cttgaaaattatgtattctactttttgaaagttg 212  Q
    |||||||||| |||||||||||||||||||||||    
T  30533748 cttgaaaattgtgtattctactttttgaaagttg 30533715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 208
Target Start/End: Complemental strand, 185559 - 185503
Alignment:
Q  152 ttaaggaaatataaacgggaatattgtcttgaaaattatgtattctactttttgaaa 208  Q
    |||||||| |||||| |  |||||||| ||||||||| |||||||||||||||||||    
T  185559 ttaaggaattataaaagaaaatattgtattgaaaattgtgtattctactttttgaaa 185503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 152 - 211
Target Start/End: Complemental strand, 140371 - 140312
Alignment:
Q  152 ttaaggaaatataaacgggaatattgtcttgaaaattatgtattctactttttgaaagtt 211  Q
    |||||||| ||||||  | ||| || ||||||||||||||||||||| ||||||||||||    
T  140371 ttaaggaattataaaatgaaattttatcttgaaaattatgtattctattttttgaaagtt 140312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0735 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0735
Description:

Target: scaffold0735; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 204
Target Start/End: Original strand, 927 - 980
Alignment:
Q  151 attaaggaaatataaacgggaatattgtcttgaaaattatgtattctacttttt 204  Q
    ||||| ||| |||||| || |||||| |||||||||||||||||| ||||||||    
T  927 attaaagaattataaaaggaaatattttcttgaaaattatgtattttacttttt 980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 4563 - 4603
Alignment:
Q  171 aatattgtcttgaaaattatgtattctactttttgaaagtt 211  Q
    |||||||| ||||||||| ||||||| ||||||||||||||    
T  4563 aatattgtattgaaaattgtgtattccactttttgaaagtt 4603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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