View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11554_low_10 (Length: 367)
Name: NF11554_low_10
Description: NF11554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11554_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 47 - 357
Target Start/End: Original strand, 45105690 - 45105997
Alignment:
| Q |
47 |
ttgcctaaactttgagttctttattttcttctatttaataaaatatagctcccccattcttcttcttcttctcataataaacaaagatatctaaagctat |
146 |
Q |
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| T |
45105690 |
ttgcgtaaactttgagttctttattttcttctatttaataaaatatagctcccccattct---tcttcttctcataataaacaaagatatctaaagctat |
45105786 |
T |
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| Q |
147 |
gtgcatatttgttgttgttgctgcaccactaaaattgatgatttgcaaccaagatccgaggaagccaaataatctccaacaggacccaactcaggaaact |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45105787 |
gtgcatatttgttgttgttgctgcaccactaaaattgatgatttgcaaccaagatccgaggaagccaaataatctccaacaggacccaactcaggaaact |
45105886 |
T |
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| Q |
247 |
cactccaatgttgaagtccatatgtctgaggagagttgacgccatgtcttctcccaactattataaaattatgttctttaaccattcctcgaagaacatc |
346 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45105887 |
cactccaatgttgaagtccatatgtctgaggagagttgacgccatttcttctcccaactattataaaattatgttctttaaccattcctcgaagaacatc |
45105986 |
T |
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| Q |
347 |
aagtgtctgtg |
357 |
Q |
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|||||| |||| |
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| T |
45105987 |
aagtgtttgtg |
45105997 |
T |
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