View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11554_low_11 (Length: 354)
Name: NF11554_low_11
Description: NF11554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11554_low_11 |
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| [»] chr5 (7 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 41711992 - 41712347
Alignment:
| Q |
1 |
aattacaatcacttcatctctctcagaattatgaattagtttggaaagaaaccaccttaaataggcttatgcaaaacgcaactaat--ttacgcgaacta |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||| |
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| T |
41711992 |
aattacaatcacttcatctctctcagaattatgaattagtttggaaagaaaccaccttaaataggcttatgcaaaacgcaactaatatttaagcaaacta |
41712091 |
T |
|
| Q |
99 |
tttttggatgacacagatatgtcttcaataaaaccaaactccatggatttgctcttcaatcattcttccactttggtgactcttaatcttgcagatacag |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41712092 |
tttttggatgacacagatatgtcttcaataaaaccaaactccatggatttgctcttcaatcattcttccactttggtgactcttaatcttgcagatacag |
41712191 |
T |
|
| Q |
199 |
gattaagcggaaaccttaaaaataacattctctgcttaccaggcattcaagaactagatatgtcacaaaatttcacccttcaaggtaagcttcctgaact |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
41712192 |
gattaagcggaaaccttaaaaataacattctctgcttaccaggcattcaagaactagatatgtcacaaaatttcaaccttcaaggtaagcttcctgaact |
41712291 |
T |
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| Q |
299 |
gagttatagtgcttctctcagtaacttgcatctctcaaactgtcaattccaaggac |
354 |
Q |
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||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41712292 |
gagctgtagtgcttctctcagtaacttgcatctctcaaactgtcaattccaaggac |
41712347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 42130622 - 42130435
Alignment:
| Q |
1 |
aattacaatcacttcatctctctcagaattatgaattagtttggaaagaaaccaccttaaataggcttatgcaaaacgcaactaatttacgcgaactatt |
100 |
Q |
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| T |
42130622 |
aattacaatcacttcatctctctgaaaattatgacttaatttggaaagagactaccttgaagaggctgttgcaaaatgcaacagatttacgagagctgtt |
42130523 |
T |
|
| Q |
101 |
tttggatgacacagatatgtcttcaataaaaccaaactccatggatttgctcttcaatcattcttccactttggtgactcttaatctt |
188 |
Q |
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|||||| |||||||||||||||||||| |||||||||||| | ||||||| |||| || |||| |||| || |||||||||||| |
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| T |
42130522 |
tttggactccacagatatgtcttcaataagaccaaactccattgctttgctcctcaaccaatctttatctttagtcactcttaatctt |
42130435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 34231020 - 34231282
Alignment:
| Q |
1 |
aattacaatcacttcatctctctcagaattatgaattagtttggaaagaaaccaccttaaataggcttatgcaaaacgcaactaatttacgcgaactatt |
100 |
Q |
| |
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||||||||||||||||||| ||| |||| || | |||||||||||||| || ||||| || || ||| ||||||||||||| | |||| | || || || |
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| T |
34231020 |
aattacaatcacttcatctttctgggaatgataagttagtttggaaagagactaccttgaagagacttgtgcaaaacgcaacaagtttaagggagctgtt |
34231119 |
T |
|
| Q |
101 |
tttggatgacacagatatgtcttcaataaaaccaaactccatggatttgctcttcaatcattcttccactttggtgactcttaatcttgcagatacagga |
200 |
Q |
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||||||| | ||||| ||||||| |||| |||||||||||| | ||||||||||||| |||| | || |||| |||||||||||| ||| ||| |
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| T |
34231120 |
tttggattatacagacatgtctttgataagaccaaactccataaacttgctcttcaatcgatctttctctctggttactcttaatcttagagagacaatc |
34231219 |
T |
|
| Q |
201 |
ttaagcggaaaccttaaaaataacattctctgcttaccaggcattcaagaactagatatgtca |
263 |
Q |
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||||| ||||| | ||||| | |||||| || |||||| | |||||||| |||||||||||| |
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| T |
34231220 |
ttaagtggaaaattgaaaaagagcattctttgtttaccaagtattcaagagctagatatgtca |
34231282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 34239063 - 34239228
Alignment:
| Q |
1 |
aattacaatcacttcatctctctcagaattatgaattagtttggaaagaaaccaccttaaataggcttatgcaaaacgcaactaatttacgcgaactatt |
100 |
Q |
| |
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||||||||||||||||||| ||| | ||||||| |||||||||||||| ||||||||||| || ||| ||||||||||||| | |||| | || || || |
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| T |
34239063 |
aattacaatcacttcatctttctgggcattatgagttagtttggaaagagaccaccttaaagagacttgtgcaaaacgcaacaagtttaagggagctgtt |
34239162 |
T |
|
| Q |
101 |
tttggatgacacagatatgtcttcaataaaaccaaactccatggatttgctcttcaatcattcttc |
166 |
Q |
| |
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||||||| | ||||||||||||| ||| || |||||||||||| | |||||||||| ||||| |
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| T |
34239163 |
tttggattattcagatatgtcttctttaagacataactccatggatgcgatcttcaatcaatcttc |
34239228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 36 - 188
Target Start/End: Complemental strand, 42125353 - 42125201
Alignment:
| Q |
36 |
ttagtttggaaagaaaccaccttaaataggcttatgcaaaacgcaactaatttacgcgaactatttttggatgacacagatatgtcttcaataaaaccaa |
135 |
Q |
| |
|
|||||||||||||| || ||||| || || || | ||||| ||||| ||||| | || || ||||||||| | ||| ||||||||||||||| ||||| |
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| T |
42125353 |
ttagtttggaaagagacgaccttgaagagatttgttcaaaatgcaacaaatttgagggagctgtttttggataatacaaatatgtcttcaataagaccaa |
42125254 |
T |
|
| Q |
136 |
actccatggatttgctcttcaatcattcttccactttggtgactcttaatctt |
188 |
Q |
| |
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||||||| | |||||||||||| || |||||| ||||||| |||||||||||| |
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| T |
42125253 |
actccattgctttgctcttcaaccaatcttcctctttggttactcttaatctt |
42125201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 41 - 263
Target Start/End: Original strand, 41570262 - 41570484
Alignment:
| Q |
41 |
ttggaaagaaaccaccttaaataggcttatgcaaaacgcaactaatttacgcgaactatttttggatgacacagatatgtcttcaataaaaccaaactcc |
140 |
Q |
| |
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||||||||||||||| || || || ||| ||||||||||||| | ||| | || ||| ||||||||| ||||||||| ||||||| || ||||||| |
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| T |
41570262 |
ttggaaagaaaccactttgaagagacttgtgcaaaacgcaacaattttgcaagagttatatttggatgaaacagatatgacttcaatcaacccaaacttg |
41570361 |
T |
|
| Q |
141 |
atggatttgctcttcaatcattcttccactttggtgactcttaatcttgcagatacaggattaagcggaaaccttaaaaataacattctctgcttaccag |
240 |
Q |
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|| ||| | |||||||| | |||||| ||||| | | ||||| |||| | ||||||||||| ||||| |||||||||||||| || |||||| |
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| T |
41570362 |
ttgaattcgatcttcaataaatcttcctctttgattagtcttagtcttcaaagaacaggattaagtggaaattggaaaaataacattctttgtttaccaa |
41570461 |
T |
|
| Q |
241 |
gcattcaagaactagatatgtca |
263 |
Q |
| |
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|||||||| |||||||||||| |
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| T |
41570462 |
atattcaagagctagatatgtca |
41570484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 211
Target Start/End: Complemental strand, 42118675 - 42118614
Alignment:
| Q |
150 |
ctcttcaatcattcttccactttggtgactcttaatcttgcagatacaggattaagcggaaa |
211 |
Q |
| |
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|||||||| || |||||| ||||||| ||||||||||||||||| ||||||||||| ||||| |
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| T |
42118675 |
ctcttcaaccaatcttcctctttggttactcttaatcttgcagagacaggattaagtggaaa |
42118614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 36 - 263
Target Start/End: Complemental strand, 8524811 - 8524584
Alignment:
| Q |
36 |
ttagtttggaaagaaaccaccttaaataggcttatgcaaaacgcaactaatttacgcgaactatttttggatgacacagatatgtcttcaataaaaccaa |
135 |
Q |
| |
|
|||||||||||||| | |||||| || || ||| ||||||||||||| || || | || | ||||||||||| |||||| |||||||| ||| ||||| |
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|
| T |
8524811 |
ttagtttggaaagagagcaccttgaagagacttgtgcaaaacgcaacaaacttgagggagttgtttttggatgatacagatttgtcttcattaagaccaa |
8524712 |
T |
|
| Q |
136 |
actccatggatttgctcttcaatcattcttccactttggtgactcttaatcttgcagatacaggattaagcggaaaccttaaaaataacattctctgctt |
235 |
Q |
| |
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||||||| | |||||| ||||| || |||||| ||||||| ||||||||||||||||| ||| ||||||||||||| || |||| | | |||| || || |
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| T |
8524711 |
actccattgctttgctattcaaccaatcttcctctttggtcactcttaatcttgcagagacaagattaagcggaaaactgaaaagaagccttctttgttt |
8524612 |
T |
|
| Q |
236 |
accaggcattcaagaactagatatgtca |
263 |
Q |
| |
|
|||||| ||||||||||||||||||||| |
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| T |
8524611 |
accaggtattcaagaactagatatgtca |
8524584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 36 - 263
Target Start/End: Original strand, 25521269 - 25521496
Alignment:
| Q |
36 |
ttagtttggaaagaaaccaccttaaataggcttatgcaaaacgcaactaatttacgcgaactatttttggatgacacagatatgtcttcaataaaaccaa |
135 |
Q |
| |
|
|||||||||||||| |||| |||||| |||||| ||||||| ||||| ||||||| || | ||||||||| | ||| |||||||||| |||| ||||| |
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|
| T |
25521269 |
ttagtttggaaagagaccatcttaaagaggcttttgcaaaatgcaacaaatttacaggagttgtttttggattatacaaatatgtcttctataagaccaa |
25521368 |
T |
|
| Q |
136 |
actccatggatttgctcttcaatcattcttccactttggtgactcttaatcttgcagatacaggattaagcggaaaccttaaaaataacattctctgctt |
235 |
Q |
| |
|
||||||| | |||||| ||||| || |||||| ||||||| ||||| |||||| | ||||||||||| ||||| | |||| | |||||| || || |
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| T |
25521369 |
actccattgctttgcttttcaaccaatcttcctctttggttactctaaatcttaaatcaacaggattaagaggaaaattcaaaaggagcattctttgttt |
25521468 |
T |
|
| Q |
236 |
accaggcattcaagaactagatatgtca |
263 |
Q |
| |
|
|||| | ||||||||| ||||||||||| |
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|
| T |
25521469 |
accaagtattcaagaaatagatatgtca |
25521496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 12250218 - 12250031
Alignment:
| Q |
1 |
aattacaatcacttcatctctctcagaattatgaattagtttggaaagaaaccaccttaaataggcttatgcaaaacgcaactaatttacgcgaactatt |
100 |
Q |
| |
|
||||| |||||||||||||||| |||||| ||| ||| ||||| |||||||| || || ||| || ||||||| ||||| ||||| | || ||||| |
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| T |
12250218 |
aattagaatcacttcatctctccgagaattttgatttaatttggggggaaaccacgttgaagaggtttgtgcaaaatgcaacaaatttgagggagctatt |
12250119 |
T |
|
| Q |
101 |
tttggatgacacagatatgtcttcaataaaaccaaactccatggatttgctcttcaatcattcttccactttggtgactcttaatctt |
188 |
Q |
| |
|
||| || | ||| | ||||||||||||| || ||||||||| |||| ||||||||| | |||||| |||||| |||||||||||| |
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| T |
12250118 |
tttaaatcaaacaaacatgtcttcaataagactaaactccataaattttctcttcaataaatcttcctatttggttactcttaatctt |
12250031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 49 - 173
Target Start/End: Complemental strand, 15590943 - 15590819
Alignment:
| Q |
49 |
aaaccaccttaaataggcttatgcaaaacgcaactaatttacgcgaactatttttggatgacacagatatgtcttcaataaaaccaaactccatggattt |
148 |
Q |
| |
|
|||||||||| || |||||| ||||||| ||||| |||||| | ||| ||||| |||||||| |||||||||||||||||||||| |||| |||| |
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| T |
15590943 |
aaaccaccttgaagaggcttgtgcaaaatgcaacaaatttaaagcagctacttttgtatgacacaaatatgtcttcaataaaaccaaaacccatcaattt |
15590844 |
T |
|
| Q |
149 |
gctcttcaatcattcttccactttg |
173 |
Q |
| |
|
| ||| |||||| |||||| ||||| |
|
|
| T |
15590843 |
gatctccaatcaatcttcctctttg |
15590819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 115 - 262
Target Start/End: Complemental strand, 11120060 - 11119913
Alignment:
| Q |
115 |
atatgtcttcaataaaaccaaactccatggatttgctcttcaatcattcttccactttggtgactcttaatcttgcagatacaggattaagcggaaacct |
214 |
Q |
| |
|
||||||||||||||| |||||||||| | |||||||||||| || |||||| ||||||| | |||| |||| || || | |||||| || ||| | |
|
|
| T |
11120060 |
atatgtcttcaataagaccaaactcctttcctttgctcttcaaccaatcttcctctttggttatacttagtcttaaagcaactgaattaagtgggaactt |
11119961 |
T |
|
| Q |
215 |
taaaaataacattctctgcttaccaggcattcaagaactagatatgtc |
262 |
Q |
| |
|
||||||||| |||| || |||||| | |||||||| ||| ||||||| |
|
|
| T |
11119960 |
gaaaaataactttctttgtttaccaagtattcaagagctatatatgtc |
11119913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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