View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11554_low_13 (Length: 299)

Name: NF11554_low_13
Description: NF11554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11554_low_13
NF11554_low_13
[»] scaffold0257 (1 HSPs)
scaffold0257 (13-299)||(18327-18613)
[»] chr3 (21 HSPs)
chr3 (13-279)||(28509767-28510036)
chr3 (13-282)||(28184771-28185043)
chr3 (13-279)||(28480584-28480853)
chr3 (102-299)||(28148993-28149193)
chr3 (16-282)||(28082712-28082981)
chr3 (13-215)||(28160219-28160424)
chr3 (132-248)||(28134729-28134845)
chr3 (20-282)||(28054393-28054652)
chr3 (20-282)||(28064818-28065077)
chr3 (145-282)||(27979596-27979733)
chr3 (145-282)||(11420153-11420290)
chr3 (145-282)||(28151056-28151193)
chr3 (191-282)||(27919514-27919605)
chr3 (159-282)||(28003328-28003451)
chr3 (218-282)||(28161137-28161201)
chr3 (212-272)||(28507044-28507104)
chr3 (188-276)||(26114053-26114141)
chr3 (194-282)||(28036606-28036694)
chr3 (199-251)||(17745345-17745397)
chr3 (199-251)||(19046665-19046717)
chr3 (189-251)||(27459748-27459810)
[»] chr7 (1 HSPs)
chr7 (132-282)||(8692902-8693052)


Alignment Details
Target: scaffold0257 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 13 - 299
Target Start/End: Original strand, 18327 - 18613
Alignment:
Q  13 cagagacagagcatgaacttgtcgaaaatgttcctggtttagaaataccaacaaatccagatgtaatttgcaggccatgtcaaattccattagatattta 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18327 cagagacagagcatgaacttgtcgaaaatgttcctggtttagaaataccaacaaatccagatgtaatttgcaggccatgtcaaattccattagatattta 18426  T
Q  113 atggatgtaattaatatttgatcattaatgcttatgttcttgttacaggagttgatgaatgaaaaatcgatgcagcaacaacgtccacttggagaaactg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18427 atggatgtaattaatatttgatcattaatgcttatgttcttgttacaggagttgatgaatgaaaaatcgatgcagcaacaacgtccacttggagaaactg 18526  T
Q  213 atattgccgtcaaaccttctcaggtaaatcatgtaatatcctacaaccgcattgtgcatataaagctaaacaaaaggcatttccctc 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18527 atattgccgtcaaaccttctcaggtaaatcatgtaatatcctacaaccgcattgtgcatataaagctaaacaaaaggcatttccctc 18613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 148; Significance: 4e-78; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 13 - 279
Target Start/End: Complemental strand, 28510036 - 28509767
Alignment:
Q  13 cagagacagagcatgaacttgtcgaaaatgttcctggtttagaaataccaacaaatccagatgtaatttgcaggccatgtcaaattccattagatattta 112  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| || | || |||| ||||||||||||||||   |||||  || |    
T  28510036 cagagacagagcatgaacttgtggaaaatgttcctgatttagaaataccaacaaattcaaaagtgatttccaggccatgtcaaattgtgttagaatttga 28509937  T
Q  113 atggatgtaattaatatttga---tcattaatgcttatgttcttgttacaggagttgatgaatgaaaaatcgatgcagcaacaacgtccacttggagaaa 209  Q
    ||||||||||||||||  |||   | |||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||     
T  28509936 atggatgtaattaatagctgaagataattaatgcttatgtgcttgttacaggagttgatgaatgaacaatcgatggagcaacaacgtctacttggagaag 28509837  T
Q  210 ctgatattgccgtcaaaccttctcaggtaaatcatgtaatatcctacaaccgcattgtgcatataaagct 279  Q
    | |||  ||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||    
T  28509836 ccgattctgccgtcaaaccttctcaggtaaatcaagtaatatcgtaccaccgcattgtgcatataaagct 28509767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 13 - 282
Target Start/End: Original strand, 28184771 - 28185043
Alignment:
Q  13 cagagacagagcatgaacttgtcgaaaatgttcctggtttagaaataccaacaaatccagatgtaatttgcaggccatgtcaaattccattagatattta 112  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| || | || |||| |||||||||||||| | | |||||  ||||    
T  28184771 cagagacagagcatgaacttgtggaaaatgttcctgatttagaaataccaacaaattcaaaagtgatttccaggccatgtcaaactgcgttagaatttta 28184870  T
Q  113 atggatgtaattaatattt---gatcattaatgcttatgttcttgttacaggagttgatgaatgaaaaatcgatgcagcaacaacgtccacttggagaaa 209  Q
    ||||||||||||||||  |   |||||||| ||||| ||||||||||||||||||||||||||||| |||| ||| |||| ||||||| ||||||||||     
T  28184871 atggatgtaattaatagctgaagatcattattgcttctgttcttgttacaggagttgatgaatgaacaatcaatggagcagcaacgtctacttggagaac 28184970  T
Q  210 ctgatattgccgtcaaaccttctcaggtaaatcatgtaatatcctacaaccgcattgtgcatataaagctaaa 282  Q
    |||||| | ||||||||||||||||||||||||||||||| || ||| ||||| |||||||||||||||||||    
T  28184971 ctgatactaccgtcaaaccttctcaggtaaatcatgtaatgtcgtaccaccgcgttgtgcatataaagctaaa 28185043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 13 - 279
Target Start/End: Complemental strand, 28480853 - 28480584
Alignment:
Q  13 cagagacagagcatgaacttgtcgaaaatgttcctggtttagaaataccaacaaatccagatgtaatttgcaggccatgtcaaattccattagatattta 112  Q
    |||| ||||||||||||||||| ||||||||| ||| ||||||||||||||||||| || | || |||| ||||||||||||||||   |||||  || |    
T  28480853 cagaaacagagcatgaacttgtggaaaatgttactgatttagaaataccaacaaattcaaaagtgatttccaggccatgtcaaattgtgttagaatttga 28480754  T
Q  113 atggatgtaattaatatttga---tcattaatgcttatgttcttgttacaggagttgatgaatgaaaaatcgatgcagcaacaacgtccacttggagaaa 209  Q
    ||||||||||||||||  |||   | |||||||||||||| |||||||||||||||||||||| || |||| ||| |||||||||||| ||||||||||     
T  28480753 atggatgtaattaatagctgaagataattaatgcttatgtgcttgttacaggagttgatgaatcaacaatctatggagcaacaacgtctacttggagaag 28480654  T
Q  210 ctgatattgccgtcaaaccttctcaggtaaatcatgtaatatcctacaaccgcattgtgcatataaagct 279  Q
    | |||| | |||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||    
T  28480653 ccgatactcccgtcaaaccttctcaggtaaatcatgtaatatcgtaccaccgcattgtgcataaaaagct 28480584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 102 - 299
Target Start/End: Original strand, 28148993 - 28149193
Alignment:
Q  102 ttagatatttaatggatgtaattaatattt---gatcattaatgcttatgttcttgttacaggagttgatgaatgaaaaatcgatgcagcaacaacgtcc 198  Q
    ||||||||||||| |||| ||||||||  |   |||||||||||| |||||||||||||||||||||||||||||||  ||| ||| | ||||||||| |    
T  28148993 ttagatatttaattgatgcaattaatagctgaagatcattaatgcctatgttcttgttacaggagttgatgaatgaacgatcaatggaccaacaacgttc 28149092  T
Q  199 acttggagaaactgatattgccgtcaaaccttctcaggtaaatcatgtaatatcctacaaccgcattgtgcatataaagctaaacaaaaggcatttccct 298  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  28149093 acttggagaaactgatactgccgtcaaaccttctcaggtaaatcatgtaatatcgtaccaccgcattgtgcatataaagctaaacaaaaggcatttccct 28149192  T
Q  299 c 299  Q
    |    
T  28149193 c 28149193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 16 - 282
Target Start/End: Original strand, 28082712 - 28082981
Alignment:
Q  16 agacagagcatgaacttgtcgaaaatgttcctggtttagaaataccaacaaatccagatgtaatttgcaggccatgtcaaattccattagatatttaatg 115  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||||||| || | || |||| ||||||||||| |||| | |||||  |||||||    
T  28082712 agacagagcatgaacttgtggaaaatgttcctgatttagaaataccaacaaattcaaaagtgatttccaggccatgtcgaattgccttagaattttaatg 28082811  T
Q  116 gatgtaattaatatttga---tcattaatgcttatgttcttgttacaggagttgatgaatgaaaaatcgatgcagcaacaacgtccacttggagaaactg 212  Q
    ||||| || |||   |||   || ||||||||| ||||||||| ||||||||||||||||||| || | ||| | |||||||||| | ||||||||||||    
T  28082812 gatgttatgaatcgctgaagatcgttaatgcttctgttcttgtaacaggagttgatgaatgaacaaacaatggaccaacaacgtctagttggagaaactg 28082911  T
Q  213 atattgccgtcaaaccttctcaggtaaatcatgtaatatcctacaaccgcattgtgcatataaagctaaa 282  Q
    ||| |||||||||||||| |||||||||||||| |||||| ||| |   |||||||||||||||||||||    
T  28082912 atactgccgtcaaaccttttcaggtaaatcatgcaatatcataccaatacattgtgcatataaagctaaa 28082981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 13 - 215
Target Start/End: Original strand, 28160219 - 28160424
Alignment:
Q  13 cagagacagagcatgaacttgtcgaaaatgttcctggtttagaaataccaacaaatccagatgtaatttgcaggccatgtcaaattccattagatattta 112  Q
    |||||||||||||||||||||| ||||||||||| | ||||||||||||||||||| || | || |||| |||||||||||||| | | |||||  ||||    
T  28160219 cagagacagagcatgaacttgtggaaaatgttcccgatttagaaataccaacaaattcaaaagtgatttccaggccatgtcaaactgcgttagaatttta 28160318  T
Q  113 atggatgtaattaatattt---gatcattaatgcttatgttcttgttacaggagttgatgaatgaaaaatcgatgcagcaacaacgtccacttggagaaa 209  Q
    ||||||||||||||||  |   |||||||| ||||| ||||||||||||||||||||||||||||| |||||||| | || ||||||| ||||||||||     
T  28160319 atggatgtaattaatagctgaagatcattattgcttctgttcttgttacaggagttgatgaatgaacaatcgatggaacagcaacgtctacttggagaac 28160418  T
Q  210 ctgata 215  Q
    ||||||    
T  28160419 ctgata 28160424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 132 - 248
Target Start/End: Original strand, 28134729 - 28134845
Alignment:
Q  132 gatcattaatgcttatgttcttgttacaggagttgatgaatgaaaaatcgatgcagcaacaacgtccacttggagaaactgatattgccgtcaaaccttc 231  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| ||| | ||||||||| |||||||||||||||||| | |||||||||||||    
T  28134729 gatcattaatgcttatgttcttgttacaggagttgatgaatgaacaatcaatggaccaacaacgttcacttggagaaactgatacttccgtcaaaccttc 28134828  T
Q  232 tcaggtaaatcatgtaa 248  Q
    ||||||||||| |||||    
T  28134829 tcaggtaaatcgtgtaa 28134845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 20 - 282
Target Start/End: Original strand, 28054393 - 28054652
Alignment:
Q  20 agagcatgaacttgtcgaaaatgttcctggtttagaaataccaacaaatccagatgtaatttgcaggccatgtcaaattccattagatatttaatggatg 119  Q
    |||| |||||||| | |||||||||||   |||| |||||||||||||  |||| |||||||||||||||||  |||||||||||| |||||||||||||    
T  28054393 agagaatgaacttattgaaaatgttccatatttaaaaataccaacaaactcagaagtaatttgcaggccatggaaaattccattagttatttaatggatg 28054492  T
Q  120 taattaata---tttgatcattaatgcttatgttcttgttacaggagttgatgaatgaaaaatcgatgcagcaacaacgtccacttggagaaactgatat 216  Q
    |||||||||      |||| |||| |||| ||||||| |||||      |||  |||||  || |||| ||||||  | || | ||||||||| |||||     
T  28054493 taattaatagcggaagatcgttaaagcttttgttcttattaca------gatccatgaactattgatgaagcaacttcatcaatttggagaaattgatac 28054586  T
Q  217 tgccgtcaaaccttctcaggtaaatcatgtaatatcctacaaccgcattgtgcatataaagctaaa 282  Q
    ||||||||||||||||||||||||||||||| |||  ||| || |||| |||||||||||| ||||    
T  28054587 tgccgtcaaaccttctcaggtaaatcatgtattattgtaccactgcatcgtgcatataaagataaa 28054652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 20 - 282
Target Start/End: Original strand, 28064818 - 28065077
Alignment:
Q  20 agagcatgaacttgtcgaaaatgttcctggtttagaaataccaacaaatccagatgtaatttgcaggccatgtcaaattccattagatatttaatggatg 119  Q
    |||| |||||||| | |||||||||||   |||| |||||||||||||  |||| |||||||||||||||||  |||||||||||| |||||||||||||    
T  28064818 agagaatgaacttattgaaaatgttccatatttaaaaataccaacaaactcagaagtaatttgcaggccatggaaaattccattagttatttaatggatg 28064917  T
Q  120 taattaata---tttgatcattaatgcttatgttcttgttacaggagttgatgaatgaaaaatcgatgcagcaacaacgtccacttggagaaactgatat 216  Q
    |||||||||      |||| |||| |||| ||||||| |||||      |||  |||||  || |||| ||||||  | || | ||||||||| |||||     
T  28064918 taattaatagcggaagatcgttaaagcttttgttcttattaca------gatccatgaactattgatgaagcaacttcatcaatttggagaaattgatac 28065011  T
Q  217 tgccgtcaaaccttctcaggtaaatcatgtaatatcctacaaccgcattgtgcatataaagctaaa 282  Q
    ||||||||||||||||||||||||||||||| |||  ||| || |||| |||||||||||| ||||    
T  28065012 tgccgtcaaaccttctcaggtaaatcatgtattattgtaccactgcatcgtgcatataaagataaa 28065077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 145 - 282
Target Start/End: Original strand, 27979596 - 27979733
Alignment:
Q  145 tatgttcttgttacaggagttgatgaatgaaaaatcgatgcagcaacaacgtccacttggagaaactgatattgccgtcaaaccttctcaggtaaatcat 244  Q
    ||||||||| ||||||||||||||| ||||| ||   ||| |||||||||||||||||||||||||||||  | |||||||||||||||  | |||| ||    
T  27979596 tatgttcttattacaggagttgatggatgaacaacaaatggagcaacaacgtccacttggagaaactgatgctaccgtcaaaccttctccagaaaataat 27979695  T
Q  245 gtaatatcctacaaccgcattgtgcatataaagctaaa 282  Q
    |||||||  ||| ||| ||||||| |||||||||||||    
T  27979696 gtaatatagtaccacctcattgtgaatataaagctaaa 27979733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 145 - 282
Target Start/End: Original strand, 11420153 - 11420290
Alignment:
Q  145 tatgttcttgttacaggagttgatgaatgaaaaatcgatgcagcaacaacgtccacttggagaaactgatattgccgtcaaaccttctcaggtaaatcat 244  Q
    ||||||| | ||||||||||||||||||||| || | ||| ||||||||||||||||||| |||||||||  | ||||||||||||  |||| ||||       
T  11420153 tatgttcatattacaggagttgatgaatgaacaaccaatggagcaacaacgtccacttggtgaaactgatgctaccgtcaaacctttgcaggaaaataca 11420252  T
Q  245 gtaatatcctacaaccgcattgtgcatataaagctaaa 282  Q
    |||||||  ||| | | ||||||||||||||| |||||    
T  11420253 gtaatatagtaccatctcattgtgcatataaaactaaa 11420290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 145 - 282
Target Start/End: Original strand, 28151056 - 28151193
Alignment:
Q  145 tatgttcttgttacaggagttgatgaatgaaaaatcgatgcagcaacaacgtccacttggagaaactgatattgccgtcaaaccttctcaggtaaatcat 244  Q
    |||||||||  |||||||||||||||||||| ||   ||| ||||| |||||| || |||||||| ||||  | |||||||||||||||| | |||| ||    
T  28151056 tatgttcttactacaggagttgatgaatgaacaagaaatggagcaaaaacgtctacgtggagaaattgatgctaccgtcaaaccttctcaagaaaataat 28151155  T
Q  245 gtaatatcctacaaccgcattgtgcatataaagctaaa 282  Q
    |||||||  ||| ||| ||||||||||||||| |||||    
T  28151156 gtaatatagtaccacctcattgtgcatataaatctaaa 28151193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 191 - 282
Target Start/End: Original strand, 27919514 - 27919605
Alignment:
Q  191 caacgtccacttggagaaactgatattgccgtcaaaccttctcaggtaaatcatgtaatatcctacaaccgcattgtgcatataaagctaaa 282  Q
    ||||||||||||||||||| ||||| | |||||||||||||||| | |||| |||||||||  ||| ||| ||||||| |||||||||||||    
T  27919514 caacgtccacttggagaaattgatactaccgtcaaaccttctcaagaaaataatgtaatatagtaccacctcattgtgaatataaagctaaa 27919605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 159 - 282
Target Start/End: Original strand, 28003328 - 28003451
Alignment:
Q  159 aggagttgatgaatgaaaaatcgatgcagcaacaacgtccacttggagaaactgatattgccgtcaaaccttctcaggtaaatcatgtaatatcctacaa 258  Q
    ||||||||||||||||| ||   ||| ||||| |||||| ||||||||||||||||  | |||||||||||||||| | |||| |||||||||  ||| |    
T  28003328 aggagttgatgaatgaacaagaaatggagcaaaaacgtctacttggagaaactgatgctaccgtcaaaccttctcaagaaaataatgtaatatagtacca 28003427  T
Q  259 ccgcattgtgcatataaagctaaa 282  Q
    || ||| ||||||||||| |||||    
T  28003428 cctcatcgtgcatataaatctaaa 28003451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 218 - 282
Target Start/End: Original strand, 28161137 - 28161201
Alignment:
Q  218 gccgtcaaaccttctcaggtaaatcatgtaatatcctacaaccgcattgtgcatataaagctaaa 282  Q
    |||||||||||||||||||||||||||||||| || ||  ||||| |||||||||||||||||||    
T  28161137 gccgtcaaaccttctcaggtaaatcatgtaatgtcgtaacaccgcgttgtgcatataaagctaaa 28161201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 212 - 272
Target Start/End: Complemental strand, 28507104 - 28507044
Alignment:
Q  212 gatattgccgtcaaaccttctcaggtaaatcatgtaatatcctacaaccgcattgtgcata 272  Q
    |||| ||||||||||||||||| |||||||||||||||||| ||| ||| |||||||||||    
T  28507104 gatactgccgtcaaaccttctccggtaaatcatgtaatatcgtaccaccacattgtgcata 28507044  T

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Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 188 - 276
Target Start/End: Complemental strand, 26114141 - 26114053
Alignment:
Q  188 caacaacgtccacttggagaaactgatattgccgtcaaaccttctcaggtaaatcatgtaatatcctacaaccgcattgtgcatataaa 276  Q
    ||||||| |||||||||||||||||||| | || ||||||||||||| | | || |||||||||  ||| | | |||||||||||||||    
T  26114141 caacaacatccacttggagaaactgatactaccatcaaaccttctcaagaagataatgtaatatagtaccatctcattgtgcatataaa 26114053  T

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Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 194 - 282
Target Start/End: Original strand, 28036606 - 28036694
Alignment:
Q  194 cgtccacttggagaaactgatattgccgtcaaaccttctcaggtaaatcatgtaatatcctacaaccgcattgtgcatataaagctaaa 282  Q
    |||||||||||||||||||||  | |||||||| ||||||  | |||| | |||||||  ||| ||| |||||||||||||||||||||    
T  28036606 cgtccacttggagaaactgatgctaccgtcaaagcttctccagaaaataacgtaatatagtaccacctcattgtgcatataaagctaaa 28036694  T

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Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 17745397 - 17745345
Alignment:
Q  199 acttggagaaactgatattgccgtcaaaccttctcaggtaaatcatgtaatat 251  Q
    ||||||||||||||||  | |||||||||||||||||| |||| |||||||||    
T  17745397 acttggagaaactgatgctaccgtcaaaccttctcaggaaaataatgtaatat 17745345  T

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Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 19046717 - 19046665
Alignment:
Q  199 acttggagaaactgatattgccgtcaaaccttctcaggtaaatcatgtaatat 251  Q
    ||||||||||||||||  | |||||||||||||||||| |||| |||||||||    
T  19046717 acttggagaaactgatgctaccgtcaaaccttctcaggaaaataatgtaatat 19046665  T

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Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 251
Target Start/End: Complemental strand, 27459810 - 27459748
Alignment:
Q  189 aacaacgtccacttggagaaactgatattgccgtcaaaccttctcaggtaaatcatgtaatat 251  Q
    ||||| ||||||||| ||||||||||  |  ||||||||||||||||| |||| |||||||||    
T  27459810 aacaatgtccacttgcagaaactgatgctagcgtcaaaccttctcaggaaaataatgtaatat 27459748  T

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Target: chr7 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 132 - 282
Target Start/End: Complemental strand, 8693052 - 8692902
Alignment:
Q  132 gatcattaatgcttatgttcttgttacaggagttgatgaatgaaaaatcgatgcagcaacaacgtccacttggagaaactgatattgccgtcaaaccttc 231  Q
    |||||||||||||| |||||||||||||||| |||||||||||| |||||||| |  ||||||||||||||||||||||||||||||||| |||||||||    
T  8693052 gatcattaatgcttctgttcttgttacaggaattgatgaatgaacaatcgatggacaaacaacgtccacttggagaaactgatattgccggcaaaccttc 8692953  T
Q  232 tcaggtaaatcatgtaatatcctacaaccgcattgtgcatataaagctaaa 282  Q
    ||||||||||||||||||||| ||| || ||||||||||||||||||||||    
T  8692952 tcaggtaaatcatgtaatatcgtaccactgcattgtgcatataaagctaaa 8692902  T

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