View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11554_low_15 (Length: 295)

Name: NF11554_low_15
Description: NF11554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11554_low_15
NF11554_low_15
[»] chr5 (12 HSPs)
chr5 (1-288)||(12340133-12340420)
chr5 (1-57)||(22229748-22229805)
chr5 (1-56)||(17027467-17027523)
chr5 (1-57)||(24841692-24841749)
chr5 (1-53)||(25075356-25075408)
chr5 (1-53)||(25133325-25133377)
chr5 (1-47)||(22754898-22754944)
chr5 (1-41)||(25594811-25594851)
chr5 (1-42)||(24517309-24517350)
chr5 (1-42)||(30072133-30072174)
chr5 (1-56)||(17382154-17382210)
chr5 (122-158)||(20520771-20520807)
[»] chr3 (8 HSPs)
chr3 (1-55)||(12573231-12573286)
chr3 (1-55)||(13549695-13549750)
chr3 (3-55)||(1475401-1475454)
chr3 (1-56)||(25919583-25919639)
chr3 (2-57)||(21017815-21017872)
chr3 (2-56)||(12409399-12409453)
chr3 (1-34)||(33914681-33914714)
chr3 (14-66)||(4776123-4776175)
[»] chr1 (9 HSPs)
chr1 (1-55)||(21451934-21451989)
chr1 (1-57)||(12424033-12424090)
chr1 (1-41)||(25266463-25266503)
chr1 (1-57)||(8247776-8247833)
chr1 (2-60)||(11770114-11770173)
chr1 (1-34)||(18301124-18301157)
chr1 (1-55)||(23519874-23519930)
chr1 (1-34)||(26657439-26657472)
chr1 (1-41)||(50047137-50047177)
[»] chr2 (6 HSPs)
chr2 (1-55)||(1733042-1733096)
chr2 (1-57)||(25473976-25474033)
chr2 (1-57)||(35707742-35707799)
chr2 (1-56)||(21505258-21505314)
chr2 (1-41)||(32619598-32619638)
chr2 (1-34)||(31914052-31914085)
[»] chr8 (13 HSPs)
chr8 (1-53)||(13082056-13082109)
chr8 (1-57)||(16054233-16054290)
chr8 (110-163)||(11197900-11197953)
chr8 (3-57)||(22894655-22894710)
chr8 (1-49)||(6358645-6358694)
chr8 (2-54)||(12956431-12956484)
chr8 (2-57)||(11310324-11310380)
chr8 (5-56)||(16052400-16052452)
chr8 (2-34)||(24120194-24120226)
chr8 (202-242)||(24591434-24591474)
chr8 (4-56)||(28901462-28901515)
chr8 (17-57)||(26882347-26882387)
chr8 (7-58)||(28902027-28902079)
[»] chr7 (14 HSPs)
chr7 (1-57)||(21471736-21471793)
chr7 (202-276)||(23197885-23197959)
chr7 (13-57)||(9761537-9761581)
chr7 (13-57)||(9801996-9802040)
chr7 (1-60)||(22067925-22067985)
chr7 (1-67)||(4092601-4092668)
chr7 (2-52)||(7815267-7815318)
chr7 (1-57)||(7142037-7142094)
chr7 (1-56)||(29544459-29544515)
chr7 (111-158)||(23196435-23196482)
chr7 (3-56)||(18496505-18496559)
chr7 (1-57)||(20446178-20446235)
chr7 (1-56)||(2353359-2353415)
chr7 (202-270)||(23196526-23196594)
[»] chr4 (11 HSPs)
chr4 (1-57)||(12111449-12111506)
chr4 (1-57)||(15192142-15192199)
chr4 (111-167)||(39120842-39120898)
chr4 (2-56)||(25315351-25315406)
chr4 (1-55)||(1676414-1676469)
chr4 (1-55)||(1682942-1682997)
chr4 (3-57)||(9783104-9783159)
chr4 (2-60)||(10320339-10320398)
chr4 (1-53)||(18897934-18897987)
chr4 (1-41)||(34864410-34864450)
chr4 (1-34)||(5906839-5906872)
[»] chr6 (4 HSPs)
chr6 (3-53)||(15998454-15998505)
chr6 (1-53)||(15574868-15574921)
chr6 (1-56)||(15576281-15576337)
chr6 (3-56)||(30355266-30355320)
[»] scaffold0188 (1 HSPs)
scaffold0188 (2-55)||(27074-27128)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-57)||(446944-447001)
[»] scaffold0171 (1 HSPs)
scaffold0171 (7-55)||(6137-6186)
[»] scaffold0282 (1 HSPs)
scaffold0282 (1-41)||(22664-22704)


Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 12340133 - 12340420
Alignment:
Q  1 gtcttcaaatgcaaagaaaagtactaaaaacataaccaaaatgtcatatgatgctctatcgtcaattctgcaaccaagatgtaagacacggtccgtccat 100  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||| ||||||||| |||||| |||||||||||| |||||    
T  12340133 gtcttcaaatgcaaagaaaa-tactaaaaacatagccaaaatgtcatatgatgctctgtcgtcagttctgcaacgaagatgcaagacacggtccttccat 12340231  T
Q  101 gcctccactattttt-ccttatcaatattcaatattgtagtttcaacataggtaaggaagtttgggaaaatttgacaaacatatcaaaaatgaaccacga 199  Q
    |||  |||||||||| ||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  12340232 gccctcactattttttccttaacaataatcaatattgtagtttcaacataggtaagaaagtttgggaaaatttgacaaacatctcaaaaatgaaccacga 12340331  T
Q  200 agtcaacatatgattcttttgtaagagactcaaccacattatcttaatctctcacgacattgttaaatatcacactttgcttcatctca 288  Q
     |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||    
T  12340332 cgtcaacatatgattcttttgtaagagactcaaccacattatcttaagctctcacgatattgttaaatatcacactttgcttcacctca 12340420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 22229805 - 22229748
Alignment:
Q  1 gtcttcaaatgcaaagaaaagtacta-aaaacataaccaaaatgtcatatgatgctct 57  Q
    |||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||    
T  22229805 gtcttcaaatgcaaagaaaagtactaaaaaacatagccaaaatgacatatgatgctct 22229748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 17027523 - 17027467
Alignment:
Q  1 gtcttcaaatgcaaagaaaagtactaaaaacataacc-aaaatgtcatatgatgctc 56  Q
    ||||| |||||||||||||||||||||||||||| || |||||||||||||||||||    
T  17027523 gtctttaaatgcaaagaaaagtactaaaaacatagccaaaaatgtcatatgatgctc 17027467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 24841749 - 24841692
Alignment:
Q  1 gtcttcaaatgcaaagaaaagtactaaaaacataac-caaaatgtcatatgatgctct 57  Q
    |||||||||||||||||| ||||||||||||||| |  ||||||||||||||||||||    
T  24841749 gtcttcaaatgcaaagaatagtactaaaaacatagcaaaaaatgtcatatgatgctct 24841692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 25075356 - 25075408
Alignment:
Q  1 gtcttcaaatgcaaagaaaagtactaaaaacataaccaaaatgtcatatgatg 53  Q
    |||||||| ||||||||||| ||||||||||||| ||||||||| ||||||||    
T  25075356 gtcttcaagtgcaaagaaaattactaaaaacatagccaaaatgtaatatgatg 25075408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 25133325 - 25133377
Alignment:
Q  1 gtcttcaaatgcaaagaaaagtactaaaaacataaccaaaatgtcatatgatg 53  Q
    |||||||| ||||||||||| ||||||||||||| ||||||||| ||||||||    
T  25133325 gtcttcaagtgcaaagaaaattactaaaaacatagccaaaatgtaatatgatg 25133377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 22754944 - 22754898
Alignment:
Q  1 gtcttcaaatgcaaagaaaagtactaaaaacataaccaaaatgtcat 47  Q
    ||||| ||||||||||||| |||||||||||||| ||||||||||||    
T  22754944 gtctttaaatgcaaagaaacgtactaaaaacatatccaaaatgtcat 22754898  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 25594811 - 25594851
Alignment:
Q  1 gtcttcaaatgcaaagaaaagtactaaaaacataaccaaaa 41  Q
    ||||||||||||||| |||||||||||||||||| ||||||    
T  25594811 gtcttcaaatgcaaataaaagtactaaaaacatagccaaaa 25594851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 24517350 - 24517309
Alignment:
Q  1 gtcttcaaatgcaaagaaaagtactaaaaacataaccaaaat 42  Q
    |||||||||||||||| |||| |||||||||||||| |||||    
T  24517350 gtcttcaaatgcaaagcaaagaactaaaaacataactaaaat 24517309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 30072174 - 30072133
Alignment:
Q  1 gtcttcaaatgcaaagaaaagtactaaaaacataaccaaaat 42  Q
    |||||||||| |||||||||||||| |||||||| |||||||    
T  30072174 gtcttcaaatccaaagaaaagtacttaaaacatagccaaaat 30072133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 17382154 - 17382210
Alignment:
Q  1 gtcttcaaatgcaaagaaaagtactaaaaacataac-caaaatgtcatatgatgctc 56  Q
    ||||||||||||||| |||||||||||| ||||| |  ||||| |||||||||||||    
T  17382154 gtcttcaaatgcaaaaaaaagtactaaacacatagcaaaaaatatcatatgatgctc 17382210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 158
Target Start/End: Original strand, 20520771 - 20520807
Alignment:
Q  122 caatattcaatattgtagtttcaacataggtaaggaa 158  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  20520771 caatattcaatatggtactttcaacataggtaaggaa 20520807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 12573286 - 12573231
Alignment:
Q  1 gtcttcaaatgcaaagaaaa-gtactaaaaacataaccaaaatgtcatatgatgct 55  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  12573286 gtcttctaatgcaaagaaaaagtactaaaaacataaccaaaatgtcatatgatgct 12573231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 13549750 - 13549695
Alignment:
Q  1 gtcttcaaatgcaaagaaaa-gtactaaaaacataaccaaaatgtcatatgatgct 55  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  13549750 gtcttctaatgcaaagaaaaagtactaaaaacataaccaaaatgtcatatgatgct 13549695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 1475401 - 1475454
Alignment:
Q  3 cttcaaatgcaaagaaaa-gtactaaaaacataaccaaaatgtcatatgatgct 55  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  1475401 cttcaaatgcaaagaaaaagtactaaaaacatagccaaaatgtcatatgatgct 1475454  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 25919583 - 25919639
Alignment:
Q  1 gtcttcaaatgcaaagaaaagtactaaaaacataacca-aaatgtcatatgatgctc 56  Q
    |||||||||| |||||||| |||||||||||||||||| |||| |||||||||||||    
T  25919583 gtcttcaaattcaaagaaatgtactaaaaacataaccagaaatatcatatgatgctc 25919639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 21017872 - 21017815
Alignment:
Q  2 tcttcaaatgcaaagaaaagtactaaaaacataac--caaaatgtcatatgatgctct 57  Q
    ||||||||||||||||||| |||||||||||||||   ||||| ||||||||||||||    
T  21017872 tcttcaaatgcaaagaaaaatactaaaaacataacaaaaaaatatcatatgatgctct 21017815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 12409453 - 12409399
Alignment:
Q  2 tcttcaaatgcaaagaaaagtactaaaaacataaccaaaatgtcatatgatgctc 56  Q
    ||||||||| |||| |||||||||||||| |||  ||||||||||| ||||||||    
T  12409453 tcttcaaatacaaataaaagtactaaaaatatagtcaaaatgtcatgtgatgctc 12409399  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 33914681 - 33914714
Alignment:
Q  1 gtcttcaaatgcaaagaaaagtactaaaaacata 34  Q
    ||||| ||||||||||||||||||||||||||||    
T  33914681 gtcttgaaatgcaaagaaaagtactaaaaacata 33914714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 4776123 - 4776175
Alignment:
Q  14 aagaaaagtactaaaaacataaccaaaatgtcatatgatgctctatcgtcaat 66  Q
    |||||||  ||||||| ||||| |||||| ||||||||||||||||| |||||    
T  4776123 aagaaaaaaactaaaagcataagcaaaatatcatatgatgctctatcatcaat 4776175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 21451934 - 21451989
Alignment:
Q  1 gtcttcaaatgcaaagaaaa-gtactaaaaacataaccaaaatgtcatatgatgct 55  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  21451934 gtcttcaaatgcaaagaaaacgtactaaaaacatagccaaaatgtcatatgatgct 21451989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 12424033 - 12424090
Alignment:
Q  1 gtcttcaaatgcaaagaaaa-gtactaaaaacataaccaaaatgtcatatgatgctct 57  Q
    |||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||    
T  12424033 gtcttcaaatgcaaagaaaaagtactaaaaacatagccaaaatatcatatgatgctct 12424090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 25266463 - 25266503
Alignment:
Q  1 gtcttcaaatgcaaagaaaagtactaaaaacataaccaaaa 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  25266463 gtcttcaaatgcaaagaaaagtactaaaaacataaccaaaa 25266503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 8247776 - 8247833
Alignment:
Q  1 gtcttcaaatgcaaagaaaag-tactaaaaacataaccaaaatgtcatatgatgctct 57  Q
    ||||||||||||||||||||| || ||||||||||  |||||||||||||||||||||    
T  8247776 gtcttcaaatgcaaagaaaaggtattaaaaacatagtcaaaatgtcatatgatgctct 8247833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 11770114 - 11770173
Alignment:
Q  2 tcttcaaatgcaaagaaaagtactaaaaacata-accaaaatgtcatatgatgctctatc 60  Q
    ||||||||||||||||| |||| |||||||||| || ||||| |||| ||||||||||||    
T  11770114 tcttcaaatgcaaagaatagtattaaaaacatagacaaaaatatcatgtgatgctctatc 11770173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 18301124 - 18301157
Alignment:
Q  1 gtcttcaaatgcaaagaaaagtactaaaaacata 34  Q
    |||||||||||||||||||||||| |||||||||    
T  18301124 gtcttcaaatgcaaagaaaagtaccaaaaacata 18301157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 23519874 - 23519930
Alignment:
Q  1 gtcttcaaatgcaaagaaaagtact--aaaaacataaccaaaatgtcatatgatgct 55  Q
    ||||||||| |||||||||||||||  |||||||||  ||||| |||||||||||||    
T  23519874 gtcttcaaaagcaaagaaaagtactaaaaaaacatagtcaaaaggtcatatgatgct 23519930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 26657472 - 26657439
Alignment:
Q  1 gtcttcaaatgcaaagaaaagtactaaaaacata 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  26657472 gtcttcaaatgcaaagaaaagtaataaaaacata 26657439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 50047177 - 50047137
Alignment:
Q  1 gtcttcaaatgcaaagaaaagtactaaaaacataaccaaaa 41  Q
    |||||||||||||||||||||||  ||||||||| ||||||    
T  50047177 gtcttcaaatgcaaagaaaagtatcaaaaacatagccaaaa 50047137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 1733096 - 1733042
Alignment:
Q  1 gtcttcaaatgcaaagaaaagtactaaaaacataaccaaaatgtcatatgatgct 55  Q
    ||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||    
T  1733096 gtcttcaaatgaaaaaaaaagtactaaaaacataactaaaatgtcatatgatgct 1733042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 25474033 - 25473976
Alignment:
Q  1 gtcttcaaatgcaaagaaaa-gtactaaaaacataaccaaaatgtcatatgatgctct 57  Q
    ||||||||||| ||| |||| |||||||||||||| ||||||||||||||||||||||    
T  25474033 gtcttcaaatgaaaataaaatgtactaaaaacatagccaaaatgtcatatgatgctct 25473976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 35707799 - 35707742
Alignment:
Q  1 gtcttcaaatgcaaagaaaa-gtactaaaaacataaccaaaatgtcatatgatgctct 57  Q
    |||||||||| ||||||||| ||||||||||||||  |||||||||||||||||||||    
T  35707799 gtcttcaaatacaaagaaaaagtactaaaaacatagtcaaaatgtcatatgatgctct 35707742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 21505258 - 21505314
Alignment:
Q  1 gtcttcaaatgcaaagaaaagtactaaaaacataacc-aaaatgtcatatgatgctc 56  Q
    |||||||||||||||||||| ||||||||||||| || ||||| |||||||||||||    
T  21505258 gtcttcaaatgcaaagaaaaatactaaaaacatagccaaaaatatcatatgatgctc 21505314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 32619638 - 32619598
Alignment:
Q  1 gtcttcaaatgcaaagaaaagtactaaaaacataaccaaaa 41  Q
    |||||||||||||||||||||||||||||| ||| ||||||    
T  32619638 gtcttcaaatgcaaagaaaagtactaaaaatatagccaaaa 32619598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 31914052 - 31914085
Alignment:
Q  1 gtcttcaaatgcaaagaaaagtactaaaaacata 34  Q
    |||||||||||||||||||| |||||||||||||    
T  31914052 gtcttcaaatgcaaagaaaaatactaaaaacata 31914085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 13082056 - 13082109
Alignment:
Q  1 gtcttcaaatgcaaagaaaa-gtactaaaaacataaccaaaatgtcatatgatg 53  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  13082056 gtcttcaaatgcaaagaaaaagtactaaaaacataatcaaaatgtcatatgatg 13082109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 16054290 - 16054233
Alignment:
Q  1 gtcttcaaatgcaaagaaaa-gtactaaaaacataaccaaaatgtcatatgatgctct 57  Q
    |||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||    
T  16054290 gtcttcaaatgcaaagaaaaagtactaaagacatagccaaaatgtcatatgatgctct 16054233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 163
Target Start/End: Complemental strand, 11197953 - 11197900
Alignment:
Q  110 atttttccttatcaatattcaatattgtagtttcaacataggtaaggaagtttg 163  Q
    ||||||||||| |||| |||||||||||||||||||||||| ||||||| ||||    
T  11197953 atttttccttaacaatgttcaatattgtagtttcaacatagttaaggaaatttg 11197900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 22894655 - 22894710
Alignment:
Q  3 cttcaaatgcaaagaaaagtactaaaaacataac-caaaatgtcatatgatgctct 57  Q
    |||||||||| ||||||||||||||||||||| |  ||||||||||||||||||||    
T  22894655 cttcaaatgcgaagaaaagtactaaaaacatacctaaaaatgtcatatgatgctct 22894710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 6358694 - 6358645
Alignment:
Q  1 gtcttcaaatgcaaagaaaagtactaaaaacata-accaaaatgtcatat 49  Q
    ||||||||||||||| ||||||||||||||||||  ||||||||||||||    
T  6358694 gtcttcaaatgcaaataaaagtactaaaaacatagcccaaaatgtcatat 6358645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 12956484 - 12956431
Alignment:
Q  2 tcttcaaatgcaaagaaaagtactaaaaacata-accaaaatgtcatatgatgc 54  Q
    ||||||||||||||||||||||||||||||||| || ||||| ||| |||||||    
T  12956484 tcttcaaatgcaaagaaaagtactaaaaacatagacaaaaatatcacatgatgc 12956431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 11310324 - 11310380
Alignment:
Q  2 tcttcaaatgcaaagaaaagtactaaaaacataac-caaaatgtcatatgatgctct 57  Q
    |||||||||||||||| |||||||||||||||| |  ||||| ||||||||||||||    
T  11310324 tcttcaaatgcaaagataagtactaaaaacatagcaaaaaatatcatatgatgctct 11310380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 16052400 - 16052452
Alignment:
Q  5 tcaaatgcaaagaaaagtactaaaaacataacc-aaaatgtcatatgatgctc 56  Q
    ||||||||||| |||||||||||||||||| || ||||| |||||||||||||    
T  16052400 tcaaatgcaaataaaagtactaaaaacatagccaaaaatatcatatgatgctc 16052452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 24120226 - 24120194
Alignment:
Q  2 tcttcaaatgcaaagaaaagtactaaaaacata 34  Q
    |||||||||||||||||||||||||||||||||    
T  24120226 tcttcaaatgcaaagaaaagtactaaaaacata 24120194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 242
Target Start/End: Original strand, 24591434 - 24591474
Alignment:
Q  202 tcaacatatgattcttttgtaagagactcaaccacattatc 242  Q
    ||||||||||||||||||| | |||||||||||||||||||    
T  24591434 tcaacatatgattcttttgaaggagactcaaccacattatc 24591474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 28901462 - 28901515
Alignment:
Q  4 ttcaaatgcaaagaaaagtactaaaaacataacc-aaaatgtcatatgatgctc 56  Q
    |||||||||||||||||||| ||||| |||| || ||||| |||||||||||||    
T  28901462 ttcaaatgcaaagaaaagtattaaaagcatagccaaaaatttcatatgatgctc 28901515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 26882387 - 26882347
Alignment:
Q  17 aaaagtactaaaaacataaccaaaatgtcatatgatgctct 57  Q
    |||||||||||||||||| |||| |||||||||||| ||||    
T  26882387 aaaagtactaaaaacatagccaagatgtcatatgatactct 26882347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 28902079 - 28902027
Alignment:
Q  7 aaatgcaaagaaaagtactaaaaa-cataaccaaaatgtcatatgatgctcta 58  Q
    ||||||||| |||||||||||||| |||| || |||| |||||||||||||||    
T  28902079 aaatgcaaataaaagtactaaaaaacatagccgaaatttcatatgatgctcta 28902027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 21471793 - 21471736
Alignment:
Q  1 gtcttcaaatgcaaagaaaa-gtactaaaaacataaccaaaatgtcatatgatgctct 57  Q
    |||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||    
T  21471793 gtcttcaaatgcaaggaaaaagtactaaaaacataaccaaaatggcatatgatgctct 21471736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 202 - 276
Target Start/End: Original strand, 23197885 - 23197959
Alignment:
Q  202 tcaacatatgattcttttgtaagagactcaaccacattatcttaatctctcacgacattgttaaatatcacactt 276  Q
    ||||||||||||||||||| | |||||||||||||||||||  || |||||| || |||||||| |||| |||||    
T  23197885 tcaacatatgattcttttgaaggagactcaaccacattatccgaagctctcatgatattgttaactatcccactt 23197959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 9761537 - 9761581
Alignment:
Q  13 aaagaaaagtactaaaaacataaccaaaatgtcatatgatgctct 57  Q
    ||||||||||||||||||| || ||||||||||||||||||||||    
T  9761537 aaagaaaagtactaaaaacgtagccaaaatgtcatatgatgctct 9761581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 9801996 - 9802040
Alignment:
Q  13 aaagaaaagtactaaaaacataaccaaaatgtcatatgatgctct 57  Q
    ||||||||||||||||||| || ||||||||||||||||||||||    
T  9801996 aaagaaaagtactaaaaacgtagccaaaatgtcatatgatgctct 9802040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 22067925 - 22067985
Alignment:
Q  1 gtcttcaaatgcaaagaaaagt-actaaaaacataaccaaaatgtcatatgatgctctatc 60  Q
    ||||||||||||||| |||| | |||||||||||| |||||||||||||||||||| ||||    
T  22067925 gtcttcaaatgcaaataaaaattactaaaaacatagccaaaatgtcatatgatgctttatc 22067985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 4092668 - 4092601
Alignment:
Q  1 gtcttcaaatgcaaagaaaa-gtactaaaaacataaccaaaatgtcatatgatgctctatcgtcaatt 67  Q
    |||||||||||||||||||| |||||||||| ||| | ||||||||||||||| |||| || ||||||    
T  4092668 gtcttcaaatgcaaagaaaaagtactaaaaatatagcaaaaatgtcatatgattctctgtcatcaatt 4092601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 7815318 - 7815267
Alignment:
Q  2 tcttcaaatgcaa-agaaaagtactaaaaacataaccaaaatgtcatatgat 52  Q
    ||||||||||||| | |||||||||||||||||||||||||| |||||||||    
T  7815318 tcttcaaatgcaacaaaaaagtactaaaaacataaccaaaatatcatatgat 7815267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 7142094 - 7142037
Alignment:
Q  1 gtcttcaaatgcaaagaaaagtactaaaaacataacc-aaaatgtcatatgatgctct 57  Q
    ||||| |||||||||||||| || |||||||||| || ||||||||||||||||||||    
T  7142094 gtctttaaatgcaaagaaaactattaaaaacatagccaaaaatgtcatatgatgctct 7142037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 29544515 - 29544459
Alignment:
Q  1 gtcttcaaatgcaaagaaaagtactaaaaacataacc-aaaatgtcatatgatgctc 56  Q
    |||||||||||||||||||| || |||||||||| || ||||| |||||||||||||    
T  29544515 gtcttcaaatgcaaagaaaattaataaaaacatagccaaaaatatcatatgatgctc 29544459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 158
Target Start/End: Original strand, 23196435 - 23196482
Alignment:
Q  111 tttttccttatcaatattcaatattgtagtttcaacataggtaaggaa 158  Q
    |||||| ||| |||||||| |||| |||||||||||||||||||||||    
T  23196435 tttttctttaacaatattctatatggtagtttcaacataggtaaggaa 23196482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 18496559 - 18496505
Alignment:
Q  3 cttcaaatgcaaagaaaagtactaaaaacataacc-aaaatgtcatatgatgctc 56  Q
    |||||||||||||||||| ||||||||||||| || ||||| ||||||| |||||    
T  18496559 cttcaaatgcaaagaaaactactaaaaacatagcctaaaatatcatatggtgctc 18496505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 20446235 - 20446178
Alignment:
Q  1 gtcttcaaatgcaaag-aaaagtactaaaaacataaccaaaatgtcatatgatgctct 57  Q
    |||||||||||||||| ||||||| |||||||||| | ||||| ||||||| ||||||    
T  20446235 gtcttcaaatgcaaagaaaaagtattaaaaacatagctaaaatatcatatgttgctct 20446178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 2353359 - 2353415
Alignment:
Q  1 gtcttcaaatgcaaagaaaagtactaaaaacataacc-aaaatgtcatatgatgctc 56  Q
    ||||||||||||||||||||  |||||||||||| || ||||| ||||| |||||||    
T  2353359 gtcttcaaatgcaaagaaaacaactaaaaacatagcctaaaatatcatacgatgctc 2353415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 270
Target Start/End: Original strand, 23196526 - 23196594
Alignment:
Q  202 tcaacatatgattcttttgtaagagactcaaccacattatcttaatctctcacgacattgttaaatatc 270  Q
    ||||||| ||||||||||| | ||||||||||| |||||||  || |||||| || |||||||| ||||    
T  23196526 tcaacatttgattcttttgaaggagactcaaccgcattatccgaagctctcatgatattgttaactatc 23196594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 12111449 - 12111506
Alignment:
Q  1 gtcttcaaatgcaaagaaaagtactaaaaacataac-caaaatgtcatatgatgctct 57  Q
    ||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||    
T  12111449 gtcttcaaatgcaaataaaagtactaaaaacataacaaaaaatgtcatatgatgctct 12111506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 15192199 - 15192142
Alignment:
Q  1 gtcttcaaatgcaaagaaaagtactaaaaacataac-caaaatgtcatatgatgctct 57  Q
    |||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||    
T  15192199 gtcttcaaatgcaaagaaaagtacgaaaaacataacaaaaaatgtcatatgatgctct 15192142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 167
Target Start/End: Original strand, 39120842 - 39120898
Alignment:
Q  111 tttttccttatcaatattcaatattgtagtttcaacataggtaaggaagtttgggaa 167  Q
    |||||||||| ||||||||||||| ||||||||| ||||||||||||| ||||||||    
T  39120842 tttttccttaacaatattcaatatggtagtttcagcataggtaaggaactttgggaa 39120898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 25315351 - 25315406
Alignment:
Q  2 tcttcaaatgcaaagaaaagtactaaaa-acataaccaaaatgtcatatgatgctc 56  Q
    |||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||    
T  25315351 tcttcaaatgtaaagaaaagtactaaaaaacataactaaaatgtcatatgatgctc 25315406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 1676414 - 1676469
Alignment:
Q  1 gtcttcaaatgcaaagaaaagtactaaaaacataacc-aaaatgtcatatgatgct 55  Q
    ||||||||||| |||||||||||| ||||| |||||| ||||||||||||||||||    
T  1676414 gtcttcaaatgtaaagaaaagtacaaaaaatataaccaaaaatgtcatatgatgct 1676469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 1682942 - 1682997
Alignment:
Q  1 gtcttcaaatgcaaagaaaagtactaaaaacataacc-aaaatgtcatatgatgct 55  Q
    ||||||||||| |||||||||||| ||||| |||||| ||||||||||||||||||    
T  1682942 gtcttcaaatgtaaagaaaagtacaaaaaatataaccaaaaatgtcatatgatgct 1682997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 9783104 - 9783159
Alignment:
Q  3 cttcaaatgcaaagaaaa-gtactaaaaacataaccaaaatgtcatatgatgctct 57  Q
    ||||||||| |||||||| ||||||||||||||  |||||||||||||||||||||    
T  9783104 cttcaaatgtaaagaaaaagtactaaaaacataggcaaaatgtcatatgatgctct 9783159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 10320339 - 10320398
Alignment:
Q  2 tcttcaaatgcaaagaaaagtactaaaaacataac-caaaatgtcatatgatgctctatc 60  Q
    |||||||||| |||||||| ||||||||||||| |  |||||||||||||||||||||||    
T  10320339 tcttcaaatggaaagaaaattactaaaaacatagcgaaaaatgtcatatgatgctctatc 10320398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 18897987 - 18897934
Alignment:
Q  1 gtcttcaaatgcaaagaaaagtactaaaaacataacc-aaaatgtcatatgatg 53  Q
    ||||||||||||||||||||||| |||||||| | || ||||||||||||||||    
T  18897987 gtcttcaaatgcaaagaaaagtagtaaaaacacagccaaaaatgtcatatgatg 18897934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 34864410 - 34864450
Alignment:
Q  1 gtcttcaaatgcaaagaaaagtactaaaaacataaccaaaa 41  Q
    |||||||||| ||||||||||||||||||||||||| ||||    
T  34864410 gtcttcaaatacaaagaaaagtactaaaaacataacaaaaa 34864450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 5906839 - 5906872
Alignment:
Q  1 gtcttcaaatgcaaagaaaagtactaaaaacata 34  Q
    ||||||||||||||| ||||||||||||||||||    
T  5906839 gtcttcaaatgcaaataaaagtactaaaaacata 5906872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 15998505 - 15998454
Alignment:
Q  3 cttcaaatgcaaagaaaa-gtactaaaaacataaccaaaatgtcatatgatg 53  Q
    |||||||||||||||||| |||| ||||||||| ||||||||||||||||||    
T  15998505 cttcaaatgcaaagaaaacgtacaaaaaacatagccaaaatgtcatatgatg 15998454  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 15574921 - 15574868
Alignment:
Q  1 gtcttcaaatgcaaagaaaa-gtactaaaaacataaccaaaatgtcatatgatg 53  Q
    |||||||||||||||||||| ||||||| || ||| ||||||||||||||||||    
T  15574921 gtcttcaaatgcaaagaaaaagtactaacaagatagccaaaatgtcatatgatg 15574868  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 15576281 - 15576337
Alignment:
Q  1 gtcttcaaatgcaaagaaaagtactaaaaacataacc-aaaatgtcatatgatgctc 56  Q
    ||||| |||| ||||||||||||||||||||||| || ||||| |||||||||||||    
T  15576281 gtctttaaattcaaagaaaagtactaaaaacatagccaaaaatatcatatgatgctc 15576337  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 30355320 - 30355266
Alignment:
Q  3 cttcaaatgcaaagaaaagtactaaaaacataacc-aaaatgtcatatgatgctc 56  Q
    ||||||||||||  |||||||||||||||||| || ||||| |||||||||||||    
T  30355320 cttcaaatgcaagtaaaagtactaaaaacatagccaaaaatatcatatgatgctc 30355266  T

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Target: scaffold0188 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 27074 - 27128
Alignment:
Q  2 tcttcaaatgcaaagaaaagtactaaaaacataacc-aaaatgtcatatgatgct 55  Q
    ||||||||||||||||||||||||||||||||| || ||||| |||| |||||||    
T  27074 tcttcaaatgcaaagaaaagtactaaaaacatagccgaaaatatcatgtgatgct 27128  T

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Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 447001 - 446944
Alignment:
Q  1 gtcttcaaatgcaaag-aaaagtactaaaaacataaccaaaatgtcatatgatgctct 57  Q
    ||||||||||| |||| |||||||||||||||||| | ||||| ||||||||||||||    
T  447001 gtcttcaaatgtaaaggaaaagtactaaaaacatagcaaaaatatcatatgatgctct 446944  T

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Target: scaffold0171 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 6186 - 6137
Alignment:
Q  7 aaatgcaaagaaaagtactaaaaacataacc-aaaatgtcatatgatgct 55  Q
    ||||| |||||||||||||||||||||| || |||||| |||||||||||    
T  6186 aaatggaaagaaaagtactaaaaacatagccaaaaatgccatatgatgct 6137  T

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Target: scaffold0282 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 22664 - 22704
Alignment:
Q  1 gtcttcaaatgcaaagaaaagtactaaaaacataaccaaaa 41  Q
    ||||||||||||||| |||||||| ||||||||| ||||||    
T  22664 gtcttcaaatgcaaataaaagtacaaaaaacatagccaaaa 22704  T

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