View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11554_low_16 (Length: 278)

Name: NF11554_low_16
Description: NF11554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11554_low_16
NF11554_low_16
[»] chr5 (8 HSPs)
chr5 (23-259)||(41711779-41712015)
chr5 (24-259)||(42125375-42125610)
chr5 (24-259)||(42130600-42130835)
chr5 (28-257)||(34238852-34239081)
chr5 (38-233)||(42118787-42118983)
chr5 (28-257)||(34230797-34231038)
chr5 (95-256)||(41570012-41570173)
chr5 (174-244)||(41433422-41433492)
[»] chr6 (1 HSPs)
chr6 (28-259)||(25521015-25521246)
[»] chr2 (2 HSPs)
chr2 (25-256)||(12250197-12250428)
chr2 (136-184)||(32680908-32680956)
[»] chr3 (1 HSPs)
chr3 (24-259)||(8524830-8525065)
[»] chr4 (1 HSPs)
chr4 (24-259)||(11120149-11120384)


Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 23 - 259
Target Start/End: Complemental strand, 41712015 - 41711779
Alignment:
Q  23 gagagagatgaagtgattgtaatttggagaggtgtgagatttgaattggaatttcaccttcaaagtaactataagacatgtcaagatgtgcaagactcaa 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41712015 gagagagatgaagtgattgtaatttggagaggtgtgagatttgaattggaatttcaccttcaaagtaactataagacatgtcaagatgtgcaagactcaa 41711916  T
Q  123 aaaccgaccaaacttagaatgaaaatgggactaagagaaatcactgtaagaaaggttgagtgtttggagatgaataagatggaaaagagtattattagga 222  Q
    |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  41711915 aaaccgaccaaacttagaatgaaaatgggagtaagagaaatcattgtaagaaaggttgagtgtttggagatgaacaagatggaaaagagtattattagga 41711816  T
Q  223 tggaatataccttgaaggccatcacagccaaggttga 259  Q
    |||||||||||||||||||||||||||||||||||||    
T  41711815 tggaatataccttgaaggccatcacagccaaggttga 41711779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 24 - 259
Target Start/End: Original strand, 42125375 - 42125610
Alignment:
Q  24 agagagatgaagtgattgtaatttggagaggtgtgagatttgaattggaatttcaccttcaaagtaactataagacatgtcaagatgtgcaagactcaaa 123  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||  ||||| |||||||||||||||||||| |    
T  42125375 agagagatgaagtgattgtaatttggaaaggtgtgagatttgaattggaatttcacctttaaagaaactacgagacaagtcaagatgtgcaagactcata 42125474  T
Q  124 aaccgaccaaacttagaatgaaaatgggactaagagaaatcactgtaagaaaggttgagtgtttggagatgaataagatggaaaagagtattattaggat 223  Q
    |||| ||||||||||||||||||||| || |||||||||||| ||| |||||||||||||||||| ||||||| ||||| |||||| ||| | |||||||    
T  42125475 aacccaccaaacttagaatgaaaatgagagtaagagaaatcattgttagaaaggttgagtgtttgaagatgaacaagattgaaaagggtactgttaggat 42125574  T
Q  224 ggaatataccttgaaggccatcacagccaaggttga 259  Q
    | | | ||||||||||||| ||||||||||| ||||    
T  42125575 gtagtttaccttgaaggccttcacagccaagattga 42125610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 24 - 259
Target Start/End: Original strand, 42130600 - 42130835
Alignment:
Q  24 agagagatgaagtgattgtaatttggagaggtgtgagatttgaattggaatttcaccttcaaagtaactataagacatgtcaagatgtgcaagactcaaa 123  Q
    ||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||| |||| ||||| ||||| ||||||||||| |||||||  |    
T  42130600 agagagatgaagtgattgtaatttggataggtgagagatttgagttggaatttcaccttctaagttactatcagacaagtcaagatgtgtaagactctga 42130699  T
Q  124 aaccgaccaaacttagaatgaaaatgggactaagagaaatcactgtaagaaaggttgagtgtttggagatgaataagatggaaaagagtattattaggat 223  Q
    || | || ||||||| |||||||||| || | | |||||||| |||||||||||||||||||||||||||||| |||||| ||||| ||| |||||||||    
T  42130700 aatccacaaaacttataatgaaaatgagagtcaaagaaatcattgtaagaaaggttgagtgtttggagatgaacaagatgaaaaagggtactattaggat 42130799  T
Q  224 ggaatataccttgaaggccatcacagccaaggttga 259  Q
     |||| |||||  |||||| ||||||||||||||||    
T  42130800 tgaatgtacctgtaaggccttcacagccaaggttga 42130835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 28 - 257
Target Start/End: Complemental strand, 34239081 - 34238852
Alignment:
Q  28 agatgaagtgattgtaatttggagaggtgtgagatttgaattggaatttcaccttcaaagtaactataagacatgtcaagatgtgcaagactcaaaaacc 127  Q
    ||||||||||||||||||||||| |||| ||||||||||   |||||||||||  |||  | | ||| ||||| ||||||||||| |||||||  |||||    
T  34239081 agatgaagtgattgtaatttggaaaggtatgagatttgagaaggaatttcaccgccaacatgagtattagacaagtcaagatgtgtaagactcgtaaacc 34238982  T
Q  128 gaccaaacttagaatgaaaatgggactaagagaaatcactgtaagaaaggttgagtgtttggagatgaataagatggaaaagagtattattaggatggaa 227  Q
      ||||||||||||| ||||| |||   | ||||| || ||| |||||||||||||||||||||||||| || || |||||| ||| ||||||||||||     
T  34238981 tgccaaacttagaatcaaaataggaaccatagaaaccattgttagaaaggttgagtgtttggagatgaacaatattgaaaagggtactattaggatggag 34238882  T
Q  228 tataccttgaaggccatcacagccaaggtt 257  Q
    ||||||||||| ||| ||||| ||||||||    
T  34238881 tataccttgaaagccttcacaaccaaggtt 34238852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 38 - 233
Target Start/End: Original strand, 42118787 - 42118983
Alignment:
Q  38 attgtaatttggagaggtgtgagatttgaattggaatttcaccttcaaagtaa-ctataagacatgtcaagatgtgcaagactcaaaaaccgaccaaact 136  Q
    ||||||||||||| | ||||||||||||| ||||||||||||||| |||| || |||| ||||| ||||||||||| |||||||||||| | ||||||||    
T  42118787 attgtaatttggataagtgtgagatttgagttggaatttcacctttaaagaaaactatgagacaagtcaagatgtgtaagactcaaaaaaccaccaaact 42118886  T
Q  137 tagaatgaaaatgggactaagagaaatcactgtaagaaaggttgagtgtttggagatgaataagatggaaaagagtattattaggatggaatatacc 233  Q
    ||||||||||| | ||    ||||||| | || | | |||||| |||||||||||||||| |||||||||||| ||||| |||||||| ||| ||||    
T  42118887 tagaatgaaaacgagaagcggagaaattattggatgcaaggtttagtgtttggagatgaacaagatggaaaagggtattgttaggatgtaatttacc 42118983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 28 - 257
Target Start/End: Complemental strand, 34231038 - 34230797
Alignment:
Q  28 agatgaagtgattgtaatttggagaggtgtgagatttgaattggaatttcaccttcaaagtaactataagacatgtcaagatgtgcaagactcaaaaacc 127  Q
    ||||||||||||||||||||||| ||||  |||||||||   ||||||||| ||| |||| ||| | |||||| ||| ||||||| |||||||| |||||    
T  34231038 agatgaagtgattgtaatttggaaaggtccgagatttgagaaggaatttcatcttgaaagaaacaagaagacaagtcgagatgtgtaagactcataaacc 34230939  T
Q  128 gaccaaacttagaatgaaaatggga------------ctaagagaaatcactgtaagaaaggttgagtgtttggagatgaataagatggaaaagagtatt 215  Q
      |||||||||||||||||||||||             | |||||||| | |||  |||||||||||  |||| || |||  |||||||||||| ||| |    
T  34230938 cgccaaacttagaatgaaaatgggagccagagaaatcgttagagaaataattgttcgaaaggttgagcatttgaaggtgagcaagatggaaaagggtact 34230839  T
Q  216 attaggatggaatataccttgaaggccatcacagccaaggtt 257  Q
    ||||||||||| ||||||||||| ||| ||||||||||||||    
T  34230838 attaggatggagtataccttgaaagccttcacagccaaggtt 34230797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 95 - 256
Target Start/End: Complemental strand, 41570173 - 41570012
Alignment:
Q  95 aagacatgtcaagatgtgcaagactcaaaaaccgaccaaacttagaatgaaaatgggactaagagaaatcactgtaagaaaggttgagtgtttggagatg 194  Q
    |||||| ||||||||||| |||||||  ||| | |||||||| |||||| |||| ||| |   |||||||| ||| |||||||||||||| |||||||||    
T  41570173 aagacaagtcaagatgtgtaagactcttaaatccaccaaactgagaatgcaaattggagttgaagaaatcattgtgagaaaggttgagtgattggagatg 41570074  T
Q  195 aataagatggaaaagagtattattaggatggaatataccttgaaggccatcacagccaaggt 256  Q
    |  |||||| |||||||| || |||||||  | | ||||||||||||  |||||||||||||    
T  41570073 agcaagatgaaaaagagtgttgttaggataaattttaccttgaaggcattcacagccaaggt 41570012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 244
Target Start/End: Original strand, 41433422 - 41433492
Alignment:
Q  174 aaggttgagtgtttggagatgaataagatggaaaagagtattattaggatggaatataccttgaaggccat 244  Q
    ||||||||||||||||||||||  |||||| ||||| ||| | || ||||| |  ||||||||||||||||    
T  41433422 aaggttgagtgtttggagatgagaaagatgaaaaagtgtactgttgggatgaatcataccttgaaggccat 41433492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 124; Significance: 8e-64; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 28 - 259
Target Start/End: Complemental strand, 25521246 - 25521015
Alignment:
Q  28 agatgaagtgattgtaatttggagaggtgtgagatttgaattggaatttcaccttcaaagtaactataagacatgtcaagatgtgcaagactcaaaaacc 127  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||| |||| |||||  ||||| || |||||||| |||||||  |||||    
T  25521246 agatgaagtgattgtaatttggaaaggtgtgagatttgagttggaattttacctttaaagaaactaccagacaagtaaagatgtgtaagactctgaaacc 25521147  T
Q  128 gaccaaacttagaatgaaaatgggactaagagaaatcactgtaagaaaggttgagtgtttggagatgaataagatggaaaagagtattattaggatggaa 227  Q
     ||||||||||| ||||||||||||   || ||||||| ||||||||||||||||| |||| | ||||  |||||||||||||||| |||||||||||||    
T  25521146 caccaaacttagcatgaaaatgggagccagtgaaatcattgtaagaaaggttgagtttttgaatatgagcaagatggaaaagagtactattaggatggaa 25521047  T
Q  228 tataccttgaaggccatcacagccaaggttga 259  Q
    ||||||||| ||||| ||||||||||||||||    
T  25521046 tataccttggaggccttcacagccaaggttga 25521015  T

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Target: chr2 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 25 - 256
Target Start/End: Original strand, 12250197 - 12250428
Alignment:
Q  25 gagagatgaagtgattgtaatttggagaggtgtgagatttgaattggaatttcaccttcaaagtaactataagacatgtcaagatgtgcaagactcaaaa 124  Q
    |||||||||||||||| ||||||||| ||||||||||||||| |||||| |||||||| |||| |||||| ||||| ||||||||||| |||| | || |    
T  12250197 gagagatgaagtgattctaatttggaaaggtgtgagatttgagttggaacttcacctttaaagaaactattagacaagtcaagatgtgtaagattaaaga 12250296  T
Q  125 accgaccaaacttagaatgaaaatgggactaagagaaatcactgtaagaaaggttgagtgtttggagatgaataagatggaaaagagtattattaggatg 224  Q
    | | |||||||||||||||||||||||| |  ||||||||| || ||||||||||||||||||||||||||  ||||| |||||| ||| ||||||| ||    
T  12250297 atccaccaaacttagaatgaaaatgggagtttgagaaatcattggaagaaaggttgagtgtttggagatgagcaagatcgaaaagggtactattaggttg 12250396  T
Q  225 gaatataccttgaaggccatcacagccaaggt 256  Q
     |||||||| | |||||| |||  ||||||||    
T  12250397 taatataccatcaaggccttcatcgccaaggt 12250428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 32680956 - 32680908
Alignment:
Q  136 ttagaatgaaaatgggactaagagaaatcactgtaagaaaggttgagtg 184  Q
    ||||||||||||||||| |||||||||| | ||| |||||||| |||||    
T  32680956 ttagaatgaaaatgggagtaagagaaatgattgttagaaaggtcgagtg 32680908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 24 - 259
Target Start/End: Original strand, 8524830 - 8525065
Alignment:
Q  24 agagagatgaagtgattgtaatttggagaggtgtgagatttgaattggaatttcaccttcaaagtaactataagacatgtcaagatgtgcaagactcaaa 123  Q
    ||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||| || |||||||| ||||| |||||||||||  |||||||||    
T  8524830 agagagatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaggtaactatgagacaagtcaagatgtgtgagactcaaa 8524929  T
Q  124 aaccgaccaaacttagaatgaaaatgggactaagagaaatcactgtaagaaaggttgagtgtttggagatgaataagatggaaaagagtattattaggat 223  Q
    |||| ||||||||| ||||||||||  ||   |||||||||| ||| || |||||||||| |||| | || |  |||||||||||| ||| | |||||||    
T  8524930 aacccaccaaactttgaatgaaaataagagccagagaaatcattgttagcaaggttgagtttttgaatataagcaagatggaaaagggtactgttaggat 8525029  T
Q  224 ggaatataccttgaaggccatcacagccaaggttga 259  Q
     || ||| |||||||| || ||||||||||||||||    
T  8525030 tgagtatgccttgaagaccttcacagccaaggttga 8525065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 24 - 259
Target Start/End: Original strand, 11120149 - 11120384
Alignment:
Q  24 agagagatgaagtgattgtaatttggagaggtgtgagatttgaattggaatttcaccttcaaagtaactataagacatgtcaagatgtgcaagactcaaa 123  Q
    |||||||| ||| |||||||||||||| || | |||||||||| ||||||||||||| | || || ||||||||||| || |||||||| |||||||  |    
T  11120149 agagagataaagggattgtaatttggaaagatatgagatttgagttggaatttcaccataaatgttactataagacaagtaaagatgtgtaagactctga 11120248  T
Q  124 aaccgaccaaacttagaatgaaaatgggactaagagaaatcactgtaagaaaggttgagtgtttggagatgaataagatggaaaagagtattattaggat 223  Q
    |||| ||||||||||||||||||| | ||    ||||||| | ||||   ||||||||||||||||||||||| |||||||||||| ||| |||| ||||    
T  11120249 aacccaccaaacttagaatgaaaacgagagccggagaaattattgtatacaaggttgagtgtttggagatgaacaagatggaaaagggtactattcggat 11120348  T
Q  224 ggaatataccttgaaggccatcacagccaaggttga 259  Q
    | ||||| |||||||| || ||||||||||| ||||    
T  11120349 gtaatatgccttgaagaccttcacagccaagattga 11120384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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