View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11554_low_20 (Length: 249)
Name: NF11554_low_20
Description: NF11554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11554_low_20 |
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| [»] scaffold0590 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 4 - 169
Target Start/End: Original strand, 4954787 - 4954950
Alignment:
| Q |
4 |
gttggtaaaacaaaacgggnnnnnnngtttgatagtggtgaagaagtacaattaaagaacgttaataaaccatctcaaaaaaggtcaatgtgttggagtt |
103 |
Q |
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| T |
4954787 |
gttggtaaaacaaaacgggaaaaaaagtttgatagtggtgaag---tacaattaaagaacgttaataaaccatctcaaaaaaggtcaatgcgttggagtt |
4954883 |
T |
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| Q |
104 |
tatgtggaagat-ctttgtaaaaatccattgtacttgtatgaattcctagggcacggatcatagtgc |
169 |
Q |
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| T |
4954884 |
tatgtggaagatcctttgtaaaaatccattgtacttgtatgaattcctagggcacagatcatagtgc |
4954950 |
T |
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Target: scaffold0590 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0590
Description:
Target: scaffold0590; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 46 - 169
Target Start/End: Complemental strand, 4293 - 4169
Alignment:
| Q |
46 |
gaagtacaattaaagaacgttaataaaccatctcaaaaaaggtcaatgtgttggagtttatgtggaagat-ctttgtaaaaatccattgtacttgtatga |
144 |
Q |
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| T |
4293 |
gaagtacaattaaagaacattaataaaccatctcaaaaaagatcaatgtgttggagtttatgtggaagatcctttgtaaaaatccattgtacttgaatga |
4194 |
T |
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| Q |
145 |
attcctagggcacggatcatagtgc |
169 |
Q |
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| T |
4193 |
attcctaggagacgaatcatagtgc |
4169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 30 - 165
Target Start/End: Complemental strand, 10475415 - 10475285
Alignment:
| Q |
30 |
gtttgatagtggtgaagaagtacaattaaagaacgttaataaaccatctcaaaaaaggtcaatgtgttggagtttatgtggaagat-ctttgtaaaaatc |
128 |
Q |
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| T |
10475415 |
gtttgatagtggtgaag---tacaattaaagaacattaataaaccatcttgaaaa-ggtttatgtgttggagtttatgtggaagattctttgtaaa--tc |
10475322 |
T |
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| Q |
129 |
cattgtacttgtatgaattcctagggcacggatcata |
165 |
Q |
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| T |
10475321 |
cattgtacttgcatgaattcctatgacacggatcata |
10475285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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