View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11554_low_22 (Length: 236)

Name: NF11554_low_22
Description: NF11554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11554_low_22
NF11554_low_22
[»] chr8 (7 HSPs)
chr8 (1-221)||(34760593-34760813)
chr8 (49-143)||(25343960-25344052)
chr8 (64-164)||(32322058-32322158)
chr8 (64-148)||(3555261-3555345)
chr8 (68-143)||(9040674-9040750)
chr8 (48-143)||(25455980-25456073)
chr8 (67-143)||(25808133-25808210)
[»] chr4 (4 HSPs)
chr4 (49-141)||(13207239-13207329)
chr4 (64-140)||(8605985-8606062)
chr4 (88-143)||(38388186-38388241)
chr4 (40-117)||(42141477-42141551)
[»] scaffold0070 (2 HSPs)
scaffold0070 (48-143)||(33968-34061)
scaffold0070 (48-143)||(13991-14084)
[»] chr6 (4 HSPs)
chr6 (64-139)||(26880029-26880108)
chr6 (64-157)||(9826995-9827089)
chr6 (40-118)||(11971647-11971723)
chr6 (64-146)||(2453952-2454037)
[»] chr7 (3 HSPs)
chr7 (40-148)||(31136376-31136482)
chr7 (103-148)||(2197514-2197559)
chr7 (64-120)||(35738007-35738063)
[»] scaffold0564 (1 HSPs)
scaffold0564 (68-157)||(6564-6654)
[»] chr5 (2 HSPs)
chr5 (64-120)||(1498065-1498122)
chr5 (39-157)||(17770448-17770564)
[»] chr3 (1 HSPs)
chr3 (64-148)||(44285801-44285886)
[»] chr2 (4 HSPs)
chr2 (89-158)||(4240972-4241041)
chr2 (40-162)||(10722032-10722154)
chr2 (64-120)||(22848078-22848135)
chr2 (40-113)||(29109040-29109111)


Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 34760813 - 34760593
Alignment:
Q  1 actccccgttttactaatattatccctcaccaacacaatattaatctcaaaattaaagcctaacaacataaaatactcattaatccatcactttctccga 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||  | |||||||||||||||||||||||| ||||||||||||||    
T  34760813 actccccgttttactaatattatccctcaacaacacaatattaatcttaaaattaaaatccaacaacataaaatactcattaatcaatcactttctccga 34760714  T
Q  101 tcatcatatcatctcatcacatagactctatttcatttctactgaaaagaaacactaaccgccaagcactcctcattgccgttgtgattgtccatctttg 200  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  34760713 tcatcatctcatctcatcacatagactctatttcatttctactaaaaagaaacactagccgccaagcactcctcattgccgttgtgattgtccatctttg 34760614  T
Q  201 ttaatttttcatgttagttat 221  Q
    |||||||||||||||||||||    
T  34760613 ttaatttttcatgttagttat 34760593  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 143
Target Start/End: Complemental strand, 25344052 - 25343960
Alignment:
Q  49 aaaattaaagcctaacaacataaaatactcattaatccat-cactttctccgatcatcatatcatctcatcacatagactctatttcatttctact 143  Q
    ||||||||||||   ||||||||| ||||  ||||||||| |||||||||| |||||||| |||| |||||||  |||||| ||||||||||||||    
T  25344052 aaaattaaagcc---caacataaagtactacttaatccattcactttctcccatcatcatctcatgtcatcactcagactcgatttcatttctact 25343960  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 164
Target Start/End: Original strand, 32322058 - 32322158
Alignment:
Q  64 caacataaaatactcattaatcca-tcactttctccgatcatcatatcatctcatcacatagactctatttcatttctactgaaaagaaacactaaccgc 162  Q
    ||||||||||||||| ||||| || | ||||||||| |||||||| |||| |||||||  | | ||||||||| ||||||| ||||| ||||||||||||    
T  32322058 caacataaaatactccttaattcatttactttctcccatcatcatctcatgtcatcactcacagtctatttcaattctactaaaaag-aacactaaccgc 32322156  T
Q  163 ca 164  Q
    ||    
T  32322157 ca 32322158  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 148
Target Start/End: Complemental strand, 3555345 - 3555261
Alignment:
Q  64 caacataaaatactcattaatccatcactttctccgatcatcatatcatctcatcacatagactctatttcatttctactgaaaa 148  Q
    ||||||||||||||||||||||  ||||||||||  ||||| || ||||||||||||  | || |||||||| ||||||| ||||    
T  3555345 caacataaaatactcattaatcattcactttctctcatcattatctcatctcatcactcacacactatttcacttctactaaaaa 3555261  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 143
Target Start/End: Original strand, 9040674 - 9040750
Alignment:
Q  68 ataaaatactcattaatccat-cactttctccgatcatcatatcatctcatcacatagactctatttcatttctact 143  Q
    ||||||||||  ||||| ||| |||||||||| || ||||| ||||||||||||  |||||||||||||||||||||    
T  9040674 ataaaatactacttaattcattcactttctcccattatcatctcatctcatcactcagactctatttcatttctact 9040750  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 143
Target Start/End: Complemental strand, 25456073 - 25455980
Alignment:
Q  48 caaaattaaagcctaacaacataaaatactcattaatccat-cactttctccgatcatcatatcatctcatcacatagactctatttcatttctact 143  Q
    |||||||||||||   || |||||| ||||  ||||||||| |||||||| | |||||||||||||||||||||  | |||| ||||||||||||||    
T  25456073 caaaattaaagcc---cagcataaagtactacttaatccattcactttcttctatcatcatatcatctcatcactcaaactcgatttcatttctact 25455980  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 143
Target Start/End: Complemental strand, 25808210 - 25808133
Alignment:
Q  67 cataaaatactcattaatccat-cactttctccgatcatcatatcatctcatcacatagactctatttcatttctact 143  Q
    |||||| ||||  ||||||||| |||||||||| ||| |||| | ||||||||||  |||||| ||||||||||||||    
T  25808210 cataaagtactacttaatccattcactttctcccatcgtcatctaatctcatcactcagactcgatttcatttctact 25808133  T

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Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 49 - 141
Target Start/End: Complemental strand, 13207329 - 13207239
Alignment:
Q  49 aaaattaaagcctaacaacataaaatactcattaatccat-cactttctccgatcatcatatcatctcatcacatagactctatttcatttcta 141  Q
    ||||||||||||   ||||||||||||||||||||||||| |||||||| | |||||||| ||||||||||||  |||||||||||||||||||    
T  13207329 aaaattaaagcc---caacataaaatactcattaatccattcactttcttctatcatcatctcatctcatcactcagactctatttcatttcta 13207239  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 64 - 140
Target Start/End: Complemental strand, 8606062 - 8605985
Alignment:
Q  64 caacataaaatactcattaatccat-cactttctccgatcatcatatcatctcatcacatagactctatttcatttct 140  Q
    ||||||||||||||| ||||| ||| |||||||||| |||||||| ||||||||||||  | ||||||||||||||||    
T  8606062 caacataaaatactccttaattcattcactttctcctatcatcatttcatctcatcactcaaactctatttcatttct 8605985  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 38388186 - 38388241
Alignment:
Q  88 tcactttctccgatcatcatatcatctcatcacatagactctatttcatttctact 143  Q
    ||||||||||| |||||||| ||||||||||||  |||||||||||||||||||||    
T  38388186 tcactttctccaatcatcatctcatctcatcactcagactctatttcatttctact 38388241  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 117
Target Start/End: Original strand, 42141477 - 42141551
Alignment:
Q  40 attaatctcaaaattaaagcctaacaacataaaatactcattaatccatcactttctccgatcatcatatcatctcat 117  Q
    ||||||||||||||||||| |   ||||||||||||||| |||||   ||||||||||  |||||||| |||||||||    
T  42141477 attaatctcaaaattaaagtc---caacataaaatactccttaatgattcactttctctcatcatcatctcatctcat 42141551  T

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Target: scaffold0070 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 143
Target Start/End: Original strand, 33968 - 34061
Alignment:
Q  48 caaaattaaagcctaacaacataaaatactcattaatccat-cactttctccgatcatcatatcatctcatcacatagactctatttcatttctact 143  Q
    |||||||||||||   ||||||||| ||||  ||||||||| |||||||||| |||||||| |||| ||||||| ||||||| ||||||||||||||    
T  33968 caaaattaaagcc---caacataaagtactacttaatccattcactttctcccatcatcatctcatgtcatcacttagactcgatttcatttctact 34061  T

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Target: scaffold0070; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 143
Target Start/End: Original strand, 13991 - 14084
Alignment:
Q  48 caaaattaaagcctaacaacataaaatactcattaatccat-cactttctccgatcatcatatcatctcatcacatagactctatttcatttctact 143  Q
    |||||||||||||   || |||||| ||||  ||||||||| |||||||| | |||||||| ||||||||||||  |||||| ||||||||||||||    
T  13991 caaaattaaagcc---cagcataaagtactacttaatccattcactttcttccatcatcatctcatctcatcactcagactcgatttcatttctact 14084  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 64 - 139
Target Start/End: Original strand, 26880029 - 26880108
Alignment:
Q  64 caacataaaatactcattaatcca-tcactttctccgatcatcat---atcatctcatcacatagactctatttcatttc 139  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||    |||||| ||||| ||||||||||||||||||    
T  26880029 caacataaaatactcattaatccattcactttctcccatcatcatcaactcatctgatcacttagactctatttcatttc 26880108  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 157
Target Start/End: Original strand, 9826995 - 9827089
Alignment:
Q  64 caacataaaatactcattaatccat-cactttctccgatcatcatatcatctcatcacatagactctatttcatttctactgaaaagaaacacta 157  Q
    ||||||||||||||| ||||| ||| |||||||||| |||||||| ||||||||||||  | | |||||||| ||||| || ||||  |||||||    
T  9826995 caacataaaatactccttaattcattcactttctcccatcatcatctcatctcatcactcatagtctatttcgtttcttctaaaaaacaacacta 9827089  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 118
Target Start/End: Original strand, 11971647 - 11971723
Alignment:
Q  40 attaatctcaaaattaaagcctaacaacataaaatactcattaatccat-cactttctccgatcatcatatcatctcatc 118  Q
    ||||||||||||||||||| |   ||||||||||||||| ||||| ||| |||||||| | |||||||| ||||||||||    
T  11971647 attaatctcaaaattaaagtc---caacataaaatactccttaattcatccactttcttccatcatcatctcatctcatc 11971723  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 146
Target Start/End: Complemental strand, 2454037 - 2453952
Alignment:
Q  64 caacataaaatactcattaatccat-cactttctccgatcatcatatc--atctcatcacatagactctatttcatttctactgaa 146  Q
    |||||||||||| |  ||||| ||| |||||||||| |||||||||||  ||||||||||  | |||||||||| |||||||||||    
T  2454037 caacataaaatatttcttaattcattcactttctcccatcatcatatctcatctcatcactcacactctatttcgtttctactgaa 2453952  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 40 - 148
Target Start/End: Original strand, 31136376 - 31136482
Alignment:
Q  40 attaatctcaaaattaaagcctaacaacataaaatactcattaatccat-cactttctccgatcatcatatcatctcatcacatagactctatttcattt 138  Q
    ||||| ||||||||||||| |   ||||||||||||||| ||||| ||| |||||||||| |||||||| | ||||||||||  | |||||||| |||||    
T  31136376 attaagctcaaaattaaagtc---caacataaaatactccttaattcattcactttctcctatcatcatcttatctcatcactcacactctattccattt 31136472  T
Q  139 ctactgaaaa 148  Q
    ||||| ||||    
T  31136473 ctactaaaaa 31136482  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 2197559 - 2197514
Alignment:
Q  103 atcatatcatctcatcacatagactctatttcatttctactgaaaa 148  Q
    ||||| ||||||||||||  ||||||||||||||||||||| ||||    
T  2197559 atcatctcatctcatcactcagactctatttcatttctactaaaaa 2197514  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 120
Target Start/End: Complemental strand, 35738063 - 35738007
Alignment:
Q  64 caacataaaatactcattaatcca-tcactttctccgatcatcatatcatctcatcac 120  Q
    ||||||||||||||| |||||||| |||| |||||| |||||||| ||||||||||||    
T  35738063 caacataaaatactccttaatccattcac-ttctcccatcatcatctcatctcatcac 35738007  T

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Target: scaffold0564 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 157
Target Start/End: Original strand, 6564 - 6654
Alignment:
Q  68 ataaaatactcattaatccat-cactttctccgatcatcatatcatctcatcacatagactctatttcatttctactgaaaagaaacacta 157  Q
    ||||||||||| ||||| ||| |||||||||| ||||||||  ||||||||||   | |||||||||| |||||||| || || |||||||    
T  6564 ataaaatactctttaattcattcactttctcccatcatcatcccatctcatcattcacactctatttcgtttctactaaataggaacacta 6654  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 120
Target Start/End: Complemental strand, 1498122 - 1498065
Alignment:
Q  64 caacataaaatactcattaatccat-cactttctccgatcatcatatcatctcatcac 120  Q
    |||| |||||||||| ||||| ||| |||||||||| |||||||| ||||||||||||    
T  1498122 caacctaaaatactccttaatacattcactttctcccatcatcatttcatctcatcac 1498065  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 157
Target Start/End: Original strand, 17770448 - 17770564
Alignment:
Q  39 tattaatctcaaaattaaagcctaacaacataaaatactcattaatcca-tcactttctccgatcatcatatcatctcatcacatagactctatttcatt 137  Q
    |||||| |||||||||||||||   ||||||||||||||| ||||| || ||||||  ||  ||| |||| |||||||| |||  | ||||||| |||||    
T  17770448 tattaagctcaaaattaaagcc---caacataaaatactccttaattcattcacttcatctcatcctcatctcatctcaccactcacactctatatcatt 17770544  T
Q  138 tctactgaaaagaaacacta 157  Q
    |||||| ||||  |||||||    
T  17770545 tctactaaaaaagaacacta 17770564  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 148
Target Start/End: Original strand, 44285801 - 44285886
Alignment:
Q  64 caacataaaatactcattaatccat-cactttctccgatcatcatatcatctcatcacatagactctatttcatttctactgaaaa 148  Q
    |||||||||||||||  |||| ||| |||||||||| |||||| | |||||||||||   | |||||||||| |||||||| ||||    
T  44285801 caacataaaatactccataattcattcactttctcccatcatcgtctcatctcatcattcacactctatttcgtttctactaaaaa 44285886  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 158
Target Start/End: Original strand, 4240972 - 4241041
Alignment:
Q  89 cactttctccgatcatcatatcatctcatcacatagactctatttcatttctactgaaaagaaacactaa 158  Q
    |||||||||| |||||||| |||||||||| |  |  ||||||||  |||||||| ||||||||||||||    
T  4240972 cactttctcctatcatcatctcatctcatctctcacgctctattttgtttctactaaaaagaaacactaa 4241041  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 162
Target Start/End: Original strand, 10722032 - 10722154
Alignment:
Q  40 attaatctcaaaattaaagcctaacaacataaaatactcattaatccat---cactttctccgatcatcatatcatctcatcacatagactctatttcat 136  Q
    ||||| ||||||||||||| |   ||||||||||||||| ||||| |||   |||||||||| |||||||| ||||||||| ||  |   |||||||| |    
T  10722032 attaagctcaaaattaaagtc---caacataaaatactccttaattcatattcactttctcccatcatcatctcatctcattactcacggtctatttcgt 10722128  T
Q  137 ttctactgaaaagaaacactaaccgc 162  Q
    ||||||| ||||  ||||||| ||||    
T  10722129 ttctactaaaaaagaacactagccgc 10722154  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 120
Target Start/End: Complemental strand, 22848135 - 22848078
Alignment:
Q  64 caacataaaatactc-attaatccatcactttctccgatcatcatatcatctcatcac 120  Q
    ||||||||||||||| |||| ||  ||||||||||| |||||||| ||||||||||||    
T  22848135 caacataaaatactccattattcattcactttctcccatcatcatctcatctcatcac 22848078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 113
Target Start/End: Complemental strand, 29109111 - 29109040
Alignment:
Q  40 attaatctcaaaattaaagcctaacaacataaaatactcattaatccat-cactttctccgatcatcatatcatc 113  Q
    ||||| ||||||||||||| |   ||||||||||||||| ||||| ||| |||||||||| |||||||| |||||    
T  29109111 attaagctcaaaattaaagtc---caacataaaatactccttaattcattcactttctcctatcatcatctcatc 29109040  T

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