View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11554_low_4 (Length: 566)
Name: NF11554_low_4
Description: NF11554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11554_low_4 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 17 - 566
Target Start/End: Original strand, 38359273 - 38359821
Alignment:
| Q |
17 |
atgaagcaggtaaccttaaagtttgttgggatatcatgcaatcagatttacaatgggatcaattcattagaagcaggatcctaaggaacnnnnnnnccag |
116 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
38359273 |
atgaagcaggtaaccttaaagtttgctgggatatcatgcaatcagatttacaatgggatcagttcattagaagcaggatcctaaggaacaaaaaa-ccag |
38359371 |
T |
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| Q |
117 |
tcgattatcatgtttcttcatctgttttgattggtgctaggcataaatactctactgtgctagaaaatgtgtcttgaaatattcgaaatggggaaaatat |
216 |
Q |
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|| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
38359372 |
tcaattatcatgtttcgtcatctgttttgagtggtgctaggcataaatactctactgtgctagaaaatgtgtcttgaaatattggaaatggggaaaatat |
38359471 |
T |
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| Q |
217 |
taacttctggattgattcctggtgtagagagcctttgacaattgcacttaacattcccccatcttcatagtcatttacaagctactcttgatacttgcat |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38359472 |
taacttctggattgattcctggtgtagagagcctttgacaactgcacttaacattcccccatcttcatagtcatttacaagctactcttgatacttgcat |
38359571 |
T |
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| Q |
317 |
tcataattttaagtggagtgtctcctaagaaatcttagttgtttgcccagttttggaacagaagttgaaacttttgtccattcctaattcttacaaggaa |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38359572 |
tcataattttaagtggagtgtctcctaagaaatcttagtcgtttgcctagttttggaacagaagttgaaacttttgtccattcctaattcttacaaggaa |
38359671 |
T |
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| Q |
417 |
gataagctgatttggaagtcatctcatgatggaagtctctcctttaaagatgcatatcgttttcatacttcccctcatcctcaaaacattagttgcgctg |
516 |
Q |
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| T |
38359672 |
gataagctgatttggaagccatctcatgatggaagtctctcctttaaagatgcatatcgttttcatacttcccctcatcctcaaaacattagttgggcta |
38359771 |
T |
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| Q |
517 |
aaactatttggcatgctactattgcccccctccaagcctcttcttgtttg |
566 |
Q |
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| T |
38359772 |
aaactatttgtaatgctgctattgtccccctccaagcctcttcttgtttg |
38359821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 471
Target Start/End: Complemental strand, 18526081 - 18525907
Alignment:
| Q |
297 |
gctactcttgatacttgcattcataattttaagtggagtgtctcctaagaaatcttagttgtttgcccagttttggaacagaagttgaaacttttgtcca |
396 |
Q |
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|||||||||||| ||| ||||| ||||||| | || ||||| | ||||||||||| ||| ||||||| || | | || || ||||| | |||| | |
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| T |
18526081 |
gctactcttgattcttatattcacaattttaggcggcgtgtccctcaagaaatcttaattgcttgcccaattcttcagcaaaaattgaagttggtgtcaa |
18525982 |
T |
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| Q |
397 |
ttcctaattcttacaaggaagataagctgatttggaagtcatctcatgatggaagtctctcctttaaagatgcat |
471 |
Q |
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| T |
18525981 |
ttcctaacacttacaaggaggataagcttatttggaagcaatctcatgatggtaacctatcatttaaagatgcat |
18525907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 11983849 - 11983901
Alignment:
| Q |
40 |
tgttgggatatcatgcaatcagatttacaatgggatcaattcattagaagcag |
92 |
Q |
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| T |
11983849 |
tgttgggatattatgcagtcagatttacaatgggctcaatttatgagaagcag |
11983901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 93
Target Start/End: Original strand, 16182586 - 16182640
Alignment:
| Q |
39 |
ttgttgggatatcatgcaatcagatttacaatgggatcaattcattagaagcagg |
93 |
Q |
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| T |
16182586 |
ttgttgggacatcatgcagtcagacttacaatgggctcaattagttagaagcagg |
16182640 |
T |
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