View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11554_low_8 (Length: 404)
Name: NF11554_low_8
Description: NF11554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11554_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 10461724 - 10461816
Alignment:
| Q |
1 |
tctatattgattaacttatcacagaggaagcgaatcattgttgataaaaacattcgaattaacatgaaatgaatcaaacacttatgacttcaac |
94 |
Q |
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| T |
10461724 |
tctatattgattaacttatcacagaggaagcaaagctatgttgataaaaacattcgaa-taacatgaactgaatcaaacacttttgatttcaac |
10461816 |
T |
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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 333 - 377
Target Start/End: Complemental strand, 10945997 - 10945953
Alignment:
| Q |
333 |
aaaggcaaatgctgcatgttacgaactgcacacaaagaaaaacaa |
377 |
Q |
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| T |
10945997 |
aaaggcaaatgcttcatgttacgaactgcacacaaagaaaaacaa |
10945953 |
T |
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