View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11555_high_1 (Length: 720)

Name: NF11555_high_1
Description: NF11555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11555_high_1
NF11555_high_1
[»] scaffold0862 (1 HSPs)
scaffold0862 (1-640)||(1-647)
[»] chr8 (5 HSPs)
chr8 (287-600)||(7275143-7275458)
chr8 (287-455)||(7277748-7277919)
chr8 (287-454)||(13856639-13856810)
chr8 (443-526)||(26175317-26175400)
chr8 (319-433)||(3567522-3567639)
[»] chr5 (14 HSPs)
chr5 (288-606)||(21256438-21256758)
chr5 (287-455)||(21254116-21254287)
chr5 (287-455)||(26873160-26873331)
chr5 (443-606)||(43233652-43233814)
chr5 (317-455)||(31339170-31339309)
chr5 (505-606)||(41949586-41949686)
chr5 (443-512)||(35304832-35304901)
chr5 (444-518)||(41949496-41949570)
chr5 (289-369)||(4730657-4730741)
chr5 (393-504)||(15543761-15543873)
chr5 (359-432)||(15531461-15531535)
chr5 (508-543)||(35304912-35304947)
chr5 (374-432)||(15531586-15531644)
chr5 (382-497)||(17823477-17823594)
[»] chr7 (10 HSPs)
chr7 (287-606)||(41832423-41832745)
chr7 (287-455)||(41830168-41830339)
chr7 (288-455)||(8083389-8083559)
chr7 (445-534)||(34512716-34512805)
chr7 (505-606)||(7737098-7737198)
chr7 (437-518)||(7737214-7737295)
chr7 (427-495)||(23612241-23612309)
chr7 (334-442)||(25432047-25432155)
chr7 (317-365)||(23613779-23613827)
chr7 (324-422)||(23613667-23613766)
[»] chr2 (7 HSPs)
chr2 (288-606)||(24039276-24039596)
chr2 (285-606)||(31269460-31269782)
chr2 (287-455)||(24038231-24038402)
chr2 (288-456)||(31180185-31180355)
chr2 (443-514)||(36316443-36316515)
chr2 (505-555)||(36316535-36316585)
chr2 (330-433)||(36402728-36402832)
[»] scaffold0525 (1 HSPs)
scaffold0525 (288-606)||(2028-2349)
[»] chr1 (6 HSPs)
chr1 (287-455)||(18705707-18705878)
chr1 (437-518)||(9905943-9906024)
chr1 (508-606)||(9906043-9906140)
chr1 (382-455)||(12436186-12436259)
chr1 (382-447)||(35267574-35267639)
chr1 (111-164)||(28249026-28249079)
[»] chr6 (8 HSPs)
chr6 (288-455)||(30689634-30689804)
chr6 (287-455)||(8655826-8655991)
chr6 (445-534)||(6823176-6823266)
chr6 (443-518)||(14618884-14618959)
chr6 (287-374)||(6825507-6825597)
chr6 (287-365)||(24249778-24249859)
chr6 (443-478)||(29427297-29427332)
chr6 (325-374)||(6823075-6823124)
[»] chr4 (9 HSPs)
chr4 (288-457)||(2546986-2547158)
chr4 (603-704)||(35933240-35933341)
chr4 (288-520)||(5444623-5444859)
chr4 (505-597)||(5444518-5444609)
chr4 (505-602)||(11814937-11815033)
chr4 (377-423)||(20880131-20880177)
chr4 (442-497)||(11815067-11815122)
chr4 (288-365)||(35783779-35783859)
chr4 (382-455)||(20879962-20880035)
[»] scaffold0023 (1 HSPs)
scaffold0023 (288-455)||(111544-111714)
[»] scaffold0251 (1 HSPs)
scaffold0251 (319-455)||(4583-4719)
[»] scaffold0655 (2 HSPs)
scaffold0655 (333-497)||(570-734)
scaffold0655 (505-555)||(486-536)
[»] chr3 (10 HSPs)
chr3 (443-596)||(4607264-4607417)
chr3 (378-497)||(8504296-8504417)
chr3 (288-455)||(10018777-10018948)
chr3 (288-455)||(10256091-10256262)
chr3 (288-455)||(10179974-10180145)
chr3 (443-518)||(42656345-42656420)
chr3 (288-421)||(10123317-10123454)
chr3 (288-399)||(10661756-10661871)
chr3 (288-399)||(782838-782954)
chr3 (317-399)||(10511058-10511141)
[»] scaffold0001 (3 HSPs)
scaffold0001 (445-534)||(144802-144892)
scaffold0001 (288-374)||(144661-144750)
scaffold0001 (287-374)||(146719-146809)
[»] scaffold0263 (2 HSPs)
scaffold0263 (505-592)||(22723-22809)
scaffold0263 (443-518)||(22825-22900)


Alignment Details
Target: scaffold0862 (Bit Score: 555; Significance: 0; HSPs: 1)
Name: scaffold0862
Description:

Target: scaffold0862; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 1 - 640
Target Start/End: Complemental strand, 647 - 1
Alignment:
Q  1 aggagttgatggtggcatcttggagnnnnnnntcgaaggcttgggatcctagatatcttacccctttggtaaatgggtgataggttaaggtttgagcgca 100  Q
    |||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  647 aggagttgatggtggcatcttggagaaaaaaatcgaaggcttgggatcctagatatcttacccctttggtaaatgggtgataggttaaggtttgagcgca 548  T
Q  101 tttaagagatcaatttgaagatagttgaaaccaaccttatatatgcatttatggagagatggcaccaaagatggcatgtggtgtgtttacttcaccttct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  547 tttaagagatcaatttgaagatagttgaaaccaaccttatatatgcatttatggagagatggcaccaaagatggcatgtggtgtgtttacttcaccttct 448  T
Q  201 gattatgggtgatttctacactttgcctctaagtataaatgaagaaggaggaaataaacttgtggatgaacaattgggagtgacttatgttaggaaatat 300  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  447 gattatgggtgatttctacacttagcctctaagtataaatgaagaaggaggaaataaacttgtggatgaacaattgggagtgacttatgttaggaaacat 348  T
Q  301 ggcatccatgaaagaa---agagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaagttccctctaatggggtggttac 397  Q
    |||||||||||||| |   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  347 ggcatccatgaaaggaaggagagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaagttccctctaatggggtggttac 248  T
Q  398 aagttatttatactactctctactaggattaatatgctactaatctatatctctaatagtccccctcaagttggaaggtgtacaaaacacttccaacttg 497  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  247 aagttatttatactattctctactaggactaatatgctactaatctatatctctaatagtccccctcaagttgaaaggtgttcaaaacacttccaacttg 148  T
Q  498 aaatgaaaaaatacaaggaaagatgccggaaatacattggccaagaacatagcaacaatcaaatgcttattccaacaagaggaaaccacaactcaaggtg 597  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  147 aaatgagaaaatacaaggaaagatgccggaaatacattggccaagaacatagcaacaatcaaatgcttactccaacaagagaaaaccacaactcaaggtg 48  T
Q  598 taacc----acttcttaaattaaactaggtatttattcaattgttca 640  Q
    |||||    ||||||||||||||||||||||||||||||||||||||    
T  47 taaccacttacttcttaaattaaactaggtatttattcaattgttca 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 287 - 600
Target Start/End: Original strand, 7275143 - 7275458
Alignment:
Q  287 atgttaggaaatatggcatccatgaaa-gaa--agagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaagttccctct 383  Q
    ||||||||||| |||| |||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7275143 atgttaggaaacatggtatccatgaaaagaaggagagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaagtaccctct 7275242  T
Q  384 aatggggtggttacaagttatttatactactctctactaggattaatatgctactaatctatatctctaatagtccccctcaagttggaaggtgtacaaa 483  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7275243 aatggggtggttacaagttatttatactactctctactaggactaatatgctactaatctatatctctaatagtccccctcaagttggaaggtgttcaaa 7275342  T
Q  484 acacttccaacttgaaatgaaaaaatacaaggaaagatgccggaaatacattggccaagaacatagcaacaatcaaatgcttattccaacaagaggaaac 583  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  7275343 acacttccaacttgaaatgagaaaatacaaggaaagatgccagaaatacattggccaagaacatagcaacaatcaaaggctta-tccaacaagaggaaac 7275441  T
Q  584 cacaactcaaggtgtaa 600  Q
    |||||||||||||||||    
T  7275442 cacaactcaaggtgtaa 7275458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 287 - 455
Target Start/End: Original strand, 7277748 - 7277919
Alignment:
Q  287 atgttaggaaatatggcatccatg-aaagaa--agagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaagttccctct 383  Q
    ||||||||||| |||| ||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7277748 atgttaggaaacatggtatccatggaaagaaggagagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaagtaccctct 7277847  T
Q  384 aatggggtggttacaagttatttatactactctctactaggattaatatgctactaatctatatctctaata 455  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  7277848 aatggggtggttacaagttatttatactactctctactaggactaatatgctaataatctatatctctaata 7277919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 287 - 454
Target Start/End: Complemental strand, 13856810 - 13856639
Alignment:
Q  287 atgttaggaaatatggcatccatg-aaagaa--agagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgaga-aaagtt-ccct 381  Q
    |||||| |||| ||| |||||||| ||||||  ||||||||||||  ||| |||| |||||||  |||||||||| |||||| ||||  |||||  ||||    
T  13856810 atgttatgaaacatgacatccatggaaagaaggagagaaaactaacgaacactttgtattgatagaaatggaatactacaaa-tgagtgaaagtaaccct 13856712  T
Q  382 ctaatggggtggttacaagttatttatactactctctactaggattaatatgctactaatctatatctctaat 454  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  13856711 ctaatggggtggttacaagttatttatactactctctactaggactaatatgccactaatctatatctctaat 13856639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 443 - 526
Target Start/End: Complemental strand, 26175400 - 26175317
Alignment:
Q  443 tatatctctaatagtccccctcaagttggaaggtgtacaaaacacttccaacttgaaatgaaaaaatacaaggaaagatgccgg 526  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||    
T  26175400 tatatctctaatagtccccctcaagttggaaggtgttcaaaacatttccaacttgaaatgagaaaatacaaggaaagatgccgg 26175317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 319 - 433
Target Start/End: Original strand, 3567522 - 3567639
Alignment:
Q  319 agaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgag---aaaagt-tccctctaatggggtggttacaagttatttatactact 414  Q
    ||||| |||| ||||||||| |||||||||||||||||||||||||| ||||   |||||| |||||||||| ||||||||||| |||||||||||||||    
T  3567522 agaaatctaacaaactctttgtattgatgaaaatggaatattacaaa-tgagtgaaaaagtatccctctaatagggtggttacaggttatttatactact 3567620  T
Q  415 ctctactaggattaatatg 433  Q
    |||| |||||| |||||||    
T  3567621 ctctgctaggactaatatg 3567639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 288 - 606
Target Start/End: Complemental strand, 21256758 - 21256438
Alignment:
Q  288 tgttaggaaatatggcatccatgaaagaaag---agaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaagttccctcta 384  Q
    |||||||||| |||||||||||| ||| |||   |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21256758 tgttaggaaacatggcatccatggaaggaaggagagaaaactaacaaactctttctattgatgaaaatggaatattacaaaatgagaaaagttccctcta 21256659  T
Q  385 atggggtggttacaagttatttatactactctctactaggattaatatgctactaatctatatctctaatagtccccctcaagttggaaggtgtacaaaa 484  Q
    |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  21256658 atggggtggttacaagttatttatactactctctactatgactaatatgctactaatctatatctctaatagtccctctcaagttggaaggtgttcaaaa 21256559  T
Q  485 cacttccaacttgaaatgaaaaaatacaaggaaagatgccggaaatacattggccaagaacatagcaacaatcaaatgcttattccaacaagaggaaacc 584  Q
    ||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  21256558 cacttccaacttgaaatgagaaaatacaaggaaagatgctagaaatacattggccaagaacatagcaacaatcaaatgctta-tccaacaagaggaaacc 21256460  T
Q  585 acaactcaaggtgtaaccactt 606  Q
    ||||||||||||||||||||||    
T  21256459 acaactcaaggtgtaaccactt 21256438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 287 - 455
Target Start/End: Complemental strand, 21254287 - 21254116
Alignment:
Q  287 atgttaggaaatatggcatccatgaaagaaag---agaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaagttccctct 383  Q
    ||||||||||| |||||||||||| ||| |||   |||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  21254287 atgttaggaaacatggcatccatggaaggaaggagagaaaagtaacaaactctttctattgatgaaaaaggaatattacaaaatgagaaaagttccctct 21254188  T
Q  384 aatggggtggttacaagttatttatactactctctactaggattaatatgctactaatctatatctctaata 455  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  21254187 aatggggcggttacaagttatttatactactctctactaggactaatatgctactaatctatatctctaata 21254116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 287 - 455
Target Start/End: Original strand, 26873160 - 26873331
Alignment:
Q  287 atgttaggaaatatggcatccatgaaagaaag---agaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaagttccctct 383  Q
    ||||||||||| |||||||||||| ||| |||   ||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||| |||||    
T  26873160 atgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatagaatattacgaaatgagaaaagtttcctct 26873259  T
Q  384 aatggggtggttacaagttatttatactactctctactaggattaatatgctactaatctatatctctaata 455  Q
    |||||  || ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||    
T  26873260 aatggaatgattacaagttatttttactactctctactaggactaatatgctactaatctatatctctaata 26873331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 443 - 606
Target Start/End: Complemental strand, 43233814 - 43233652
Alignment:
Q  443 tatatctctaatagtccccctcaagttggaaggtgtacaaaacacttccaacttgaaatgaaaaaatacaaggaaagatgccggaaatacattggccaag 542  Q
    |||| ||||||||||||||| |||||||||||| || ||||||||||||||||||  |||| ||||||||||||||||| |||||||||||| | |||||    
T  43233814 tataactctaatagtcccccgcaagttggaaggcgttcaaaacacttccaacttgggatgagaaaatacaaggaaagataccggaaatacatcgaccaag 43233715  T
Q  543 aacatagcaacaatcaaatgcttattccaacaagaggaaaccacaactcaaggtgtaaccactt 606  Q
    |  |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  43233714 agaatagcaacaaccaaatgctta-tccaacaagaggaaaccacaactcaaggtgtaaccactt 43233652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 317 - 455
Target Start/End: Original strand, 31339170 - 31339309
Alignment:
Q  317 agagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaagtt-ccctctaatggggtggttacaagttatttatactactc 415  Q
    |||||||||||||||||||||||||| |||| |||| |||||||||||||||||  || |  ||| ||||||||||||||||||||||||||||||||||    
T  31339170 agagaaaactaagaaactctttctatcgatggaaattgaatattacaaaatgagtgaattgacccactaatggggtggttacaagttatttatactactc 31339269  T
Q  416 tctactaggattaatatgctactaatctatatctctaata 455  Q
    |||||||||| ||||||  || || || ||||||||||||    
T  31339270 tctactaggactaatataatattattcaatatctctaata 31339309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 505 - 606
Target Start/End: Original strand, 41949586 - 41949686
Alignment:
Q  505 aaaatacaaggaaagatgccggaaatacattggccaagaacatagcaacaatcaaatgcttattccaacaagaggaaaccacaactcaaggtgtaaccac 604  Q
    ||||||||||||||||||||||||||| || ||||||||  | |||| ||| |||||||||| |||||||||||||||||||||||||| ||||||||||    
T  41949586 aaaatacaaggaaagatgccggaaatatatcggccaagagaagagcagcaaccaaatgctta-tccaacaagaggaaaccacaactcaatgtgtaaccac 41949684  T
Q  605 tt 606  Q
    ||    
T  41949685 tt 41949686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 443 - 512
Target Start/End: Original strand, 35304832 - 35304901
Alignment:
Q  443 tatatctctaatagtccccctcaagttggaaggtgtacaaaacacttccaacttgaaatgaaaaaataca 512  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  35304832 tatatctcaaatagtccccctcaagttggaaggtgttcaaaacacttccaacttgaaatgagaaaataca 35304901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 444 - 518
Target Start/End: Original strand, 41949496 - 41949570
Alignment:
Q  444 atatctctaatagtccccctcaagttggaaggtgtacaaaacacttccaacttgaaatgaaaaaatacaaggaaa 518  Q
    |||| |||||||||||||||||||||||||||||  |||||||||||||  ||||||||| ||||||||||||||    
T  41949496 atatatctaatagtccccctcaagttggaaggtgctcaaaacacttccacattgaaatgagaaaatacaaggaaa 41949570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 289 - 369
Target Start/End: Complemental strand, 4730741 - 4730657
Alignment:
Q  289 gttaggaaatatggcatccatgaaagaaagagaaaa----ctaagaaactctttctattgatgaaaatggaatattacaaaatga 369  Q
    ||||||||| |||||||||||| | ||| |||||||    |||| ||||||||| |||||||| |||||||||||||||||||||    
T  4730741 gttaggaaacatggcatccatggatgaaggagaaaaaaagctaacaaactctttgtattgatggaaatggaatattacaaaatga 4730657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 393 - 504
Target Start/End: Original strand, 15543761 - 15543873
Alignment:
Q  393 gttacaagttatttatactactct-ctactaggattaatatgctactaatctatatctctaatagtccccctcaagttggaaggtgtacaaaacacttcc 491  Q
    |||||||| |||||||||||||   ||| ||||| |||||||| |||| | ||||| || |||||| |||  ||||||||||||||| || | |||||||    
T  15543761 gttacaagctatttatactacttaactattaggactaatatgccactagtttatatttccaatagtgcccagcaagttggaaggtgttcacagcacttcc 15543860  T
Q  492 aacttgaaatgaa 504  Q
    ||||||| |||||    
T  15543861 aacttgagatgaa 15543873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 359 - 432
Target Start/End: Original strand, 15531461 - 15531535
Alignment:
Q  359 ttacaaaatgaga-aaagttccctctaatggggtggttacaagttatttatactactctctactaggattaatat 432  Q
    ||||||||||||  ||||||||| ||||||||||||||||||  |||||||| |||| |||| ||||| ||||||    
T  15531461 ttacaaaatgagtgaaagttcccactaatggggtggttacaaactatttatagtactatctattaggactaatat 15531535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 508 - 543
Target Start/End: Original strand, 35304912 - 35304947
Alignment:
Q  508 atacaaggaaagatgccggaaatacattggccaaga 543  Q
    ||||||||||||||||||||||||||| ||||||||    
T  35304912 atacaaggaaagatgccggaaatacatcggccaaga 35304947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 374 - 432
Target Start/End: Original strand, 15531586 - 15531644
Alignment:
Q  374 agttccctctaatggggtggttacaagttatttatactactctctactaggattaatat 432  Q
    ||||||| ||||| ||||||||||||| |||||||| |||| |||| ||||| ||||||    
T  15531586 agttcccactaattgggtggttacaagctatttatagtactatctattaggactaatat 15531644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 382 - 497
Target Start/End: Complemental strand, 17823594 - 17823477
Alignment:
Q  382 ctaatggggtggttacaagttatttatactactctctactaggattaatatgctactaatctatatctct--aatagtccccctcaagttggaaggtgta 479  Q
    ||||| || ||| |||||||||||||||||| | | ||||| || |||| | | | |||||||||| | |  ||||||||||  |||||||||||||||     
T  17823594 ctaataggatggctacaagttatttatactaatatttactatgactaatgtaccattaatctatatatatccaatagtcccctgcaagttggaaggtgtt 17823495  T
Q  480 caaaacacttccaacttg 497  Q
    || ||||||| |||||||    
T  17823494 cataacactttcaacttg 17823477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 250; Significance: 1e-138; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 287 - 606
Target Start/End: Complemental strand, 41832745 - 41832423
Alignment:
Q  287 atgttaggaaatatggcatccatgaaagaaa---gagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaagttccctct 383  Q
    ||||||||||| |||||||||||| ||| ||   ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  41832745 atgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatgaaaattgaatattacaaaatgagaaaagtaccctct 41832646  T
Q  384 aatggggtggttacaagttatttatactactctctactaggattaatatgctactaatctatatctctaatagtccccctcaagttggaaggtgtacaaa 483  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  41832645 aatggggtggttacaagttatttatactactctctactaggactaatatgctactaatctatatctctaatagtccccttcaagttggaaggtgttcaaa 41832546  T
Q  484 acacttccaacttgaaatgaaaaaatacaaggaaagatgccggaaatacattggccaagaacatagcaacaatcaaatgcttattccaacaagaggaaac 583  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  41832545 acacttccaacttgaaatgagaaaatacaaggaaagatgccagaaatacattggccaagaacataacaacaatcaaatgctta-tccaacaagaggaaac 41832447  T
Q  584 cacaactcaa-ggtgtaaccactt 606  Q
    |||||||||| |||||||||||||    
T  41832446 cacaactcaagggtgtaaccactt 41832423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 287 - 455
Target Start/End: Complemental strand, 41830339 - 41830168
Alignment:
Q  287 atgttaggaaatatggcatccatgaaagaaa---gagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaagttccctct 383  Q
    ||||||||||| ||| |||||||| ||| ||   |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  41830339 atgttaggaaacatgtcatccatggaaggaatgagagaaaactaagaaactctttctattgatgtaaattgaatattacaaaatgagaaaagttccctct 41830240  T
Q  384 aatggggtggttacaagttatttatactactctctactaggattaatatgctactaatctatatctctaata 455  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  41830239 aatggggtggttacaagttatttatactactctctactaggactaatatgctactaatctatatctctaata 41830168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 288 - 455
Target Start/End: Original strand, 8083389 - 8083559
Alignment:
Q  288 tgttaggaaatatggcatccatgaaagaaag---agaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaagttccctcta 384  Q
    |||||||||| |||||||||||| ||| |||   |||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  8083389 tgttaggaaacatggcatccatggaaggaaggagagaaaactaaaaaactctttctattgatgaaaatgaaatattacaaaatgacaaaagttccctcta 8083488  T
Q  385 atggggtggttacaagttatttatactactctctactaggattaatatgctactaatctatatctctaata 455  Q
    |||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||    
T  8083489 atggggtggttagaagttatttatactactctttactaggactaatatgctactaatctatatctttaata 8083559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 445 - 534
Target Start/End: Complemental strand, 34512805 - 34512716
Alignment:
Q  445 tatctctaatagtccccctcaagttggaaggtgtacaaaacacttccaacttgaaatgaaaaaatacaaggaaagatgccggaaatacat 534  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||    
T  34512805 tatctctaatagtccccctcaagttggaaggtgttcaaaacactttcaacttgaaatgagaaaatacaaggaaagatgccggaaacacat 34512716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 505 - 606
Target Start/End: Complemental strand, 7737198 - 7737098
Alignment:
Q  505 aaaatacaaggaaagatgccggaaatacattggccaagaacatagcaacaatcaaatgcttattccaacaagaggaaaccacaactcaaggtgtaaccac 604  Q
    ||||||||| |||||||||||||||||||| | |||||| ||||| ||||| |||||||||||| ||||||||||||||||||||||||||| |||||||    
T  7737198 aaaatacaaagaaagatgccggaaatacatcgaccaagagcatagaaacaaccaaatgcttatt-caacaagaggaaaccacaactcaaggtttaaccac 7737100  T
Q  605 tt 606  Q
    ||    
T  7737099 tt 7737098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 437 - 518
Target Start/End: Complemental strand, 7737295 - 7737214
Alignment:
Q  437 ctaatctatatctctaatagtccccctcaagttggaaggtgtacaaaacacttccaacttgaaatgaaaaaatacaaggaaa 518  Q
    |||| ||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||  |||| ||||||||||||||    
T  7737295 ctaacctatatctctaatagtcccccgcaagttggaaggtgttcaaaccacttccaacttgggatgagaaaatacaaggaaa 7737214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 427 - 495
Target Start/End: Complemental strand, 23612309 - 23612241
Alignment:
Q  427 taatatgctactaatctatatctctaatagtccccctcaagttggaaggtgtacaaaacacttccaact 495  Q
    |||||||  ||||| ||||||||||||||||||| | ||||||||||||||| || |||||||||||||    
T  23612309 taatatgaaactaaactatatctctaatagtccctcgcaagttggaaggtgttcacaacacttccaact 23612241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 334 - 442
Target Start/End: Complemental strand, 25432155 - 25432047
Alignment:
Q  334 tctttctattgatgaaaatggaatattacaaaatgaga-aaagttccctctaatggggtggttacaagttatttatactactctctactaggattaatat 432  Q
    ||||| |||||||| |||| ||||||||| || ||||  ||||| ||| ||||||||||||||||||| |||||||| |||| |||| ||||| ||||||    
T  25432155 tctttatattgatggaaattgaatattacgaa-tgagtgaaagtgcccactaatggggtggttacaagctatttatagtactatctattaggactaatat 25432057  T
Q  433 gctactaatc 442  Q
     | |||||||    
T  25432056 accactaatc 25432047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 317 - 365
Target Start/End: Complemental strand, 23613827 - 23613779
Alignment:
Q  317 agagaaaactaagaaactctttctattgatgaaaatggaatattacaaa 365  Q
    |||||||||||| ||||||||| |||||||| ||||| |||||||||||    
T  23613827 agagaaaactaacaaactctttttattgatggaaatgaaatattacaaa 23613779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 324 - 422
Target Start/End: Complemental strand, 23613766 - 23613667
Alignment:
Q  324 actaagaaactctttctattgatgaaaatggaatattacaaaatga--gaaaagttccctctaatggggtggttacaagttatttatactactctctact 421  Q
    ||||| ||||||||| |||||||| ||||| |||||||| ||||||  ||||  ||||| |||||  |||||||||||  ||||||||||||  ||||||    
T  23613766 actaacaaactctttttattgatggaaatgaaatattac-aaatgagtgaaagtttcccactaattaggtggttacaaactatttatactacaatctact 23613668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 248; Significance: 1e-137; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 288 - 606
Target Start/End: Complemental strand, 24039596 - 24039276
Alignment:
Q  288 tgttaggaaatatggcatccatgaaagaaa---gagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaagttccctcta 384  Q
    |||||| ||| |||||||||||| ||| ||   ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  24039596 tgttagaaaacatggcatccatggaaggaatgagagaaaactaagaaactttttctattgatgaaaatggaatattacaatatgagaaaagtgccctcta 24039497  T
Q  385 atggggtggttacaagttatttatactactctctactaggattaatatgctactaatctatatctctaatagtccccctcaagttggaaggtgtacaaaa 484  Q
    ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  24039496 atgaggtggttacaagttatttatactactctctactaggactaatatgctactaatctatatctctaatagtccccctcaagttggaaggtgttcaaaa 24039397  T
Q  485 cacttccaacttgaaatgaaaaaatacaaggaaagatgccggaaatacattggccaagaacatagcaacaatcaaatgcttattccaacaagaggaaacc 584  Q
    ||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  24039396 cacttccaacttgaaatgagaaaatacaaggaaagatgctagaaatacattggccaagaacatagcaacaatcaaatgctta-tccaacaagaggaaacc 24039298  T
Q  585 acaactcaaggtgtaaccactt 606  Q
    ||||||||||||||||||||||    
T  24039297 acaactcaaggtgtaaccactt 24039276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 285 - 606
Target Start/End: Original strand, 31269460 - 31269782
Alignment:
Q  285 ttatgttaggaaatatggcatccatgaaagaaag---agaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaagttccct 381  Q
    ||||||||||||| |||||||||||| ||| |||   ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||    
T  31269460 ttatgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaattgaatattacaaaatgagaaaagtaccct 31269559  T
Q  382 ctaatggggtggttacaagttatttatactactctctactaggattaatatgctactaatctatatctctaatagtccccctcaagttggaaggtgtaca 481  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||    
T  31269560 ctaatggggtggttacaagttatttatattactctctactaggactaatatgctacta-tctatatatctaatagtccccctcaagttggaaggtgttca 31269658  T
Q  482 aaacacttccaacttgaaatgaaaaaatacaaggaaagatgccggaaatacattggccaagaacatagcaacaatcaaatgcttattccaacaagaggaa 581  Q
    |||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31269659 aaacacttccaacttgaaatgagaaaatacaaggaaagatgctagaaatacattggccaagaacatagcaacaatcaaatgctta-tccaacaagaggaa 31269757  T
Q  582 accacaactcaaggtgtaaccactt 606  Q
    |||||||||||||||||||||||||    
T  31269758 accacaactcaaggtgtaaccactt 31269782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 287 - 455
Target Start/End: Complemental strand, 24038402 - 24038231
Alignment:
Q  287 atgttaggaaatatggcatccatgaaagaaa---gagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaagttccctct 383  Q
    ||||||| ||| |||||||||||| ||| ||   ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  24038402 atgttagaaaacatggcatccatggaaggaatgagagaaaactaagaaactttttctattgatgaaaatggaatattacaatatgagaaaagtgccctct 24038303  T
Q  384 aatggggtggttacaagttatttatactactctctactaggattaatatgctactaatctatatctctaata 455  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  24038302 aatggagtggttacaagttatttatactactctctactaggactaatatgctactaatctatatctctaata 24038231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 288 - 456
Target Start/End: Complemental strand, 31180355 - 31180185
Alignment:
Q  288 tgttaggaaatatggcatccatgaaagaaag---agaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaagttccctcta 384  Q
    |||||||||  |||||||||||| ||| |||   ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  31180355 tgttaggaagcatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgagaaaagt-ccctcta 31180257  T
Q  385 atggggtggttacaagttatttatactactctctactaggattaatatgctactaatctatatctctaatag 456  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  31180256 atggggtggttagaagttatttatactactctctactaggactaatatgctactaatctatatctctaatag 31180185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 443 - 514
Target Start/End: Original strand, 36316443 - 36316515
Alignment:
Q  443 tatatctctaatagtccccctcaagttggaaggtgtac-aaaacacttccaacttgaaatgaaaaaatacaag 514  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| | ||||||||||    
T  36316443 tatatctctaatagtccccctcaagttggaaggtgttcaaaaacacttccaacttgaaataagaaaatacaag 36316515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 505 - 555
Target Start/End: Original strand, 36316535 - 36316585
Alignment:
Q  505 aaaatacaaggaaagatgccggaaatacattggccaagaacatagcaacaa 555  Q
    ||||||||||||||||||| ||||||||| |||||||||  ||||||||||    
T  36316535 aaaatacaaggaaagatgctggaaatacactggccaagagaatagcaacaa 36316585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 330 - 433
Target Start/End: Original strand, 36402728 - 36402832
Alignment:
Q  330 aaactctttctattgatgaaaatggaatattacaaaatgag-aaaagtt-ccctctaatggggtggttacaagttatttatactactctctactaggatt 427  Q
    ||||||||| |||||||| |||| ||||||||| |||||||  |||||| ||| ||||||||||||||||||  |||||||||||   ||||||| || |    
T  36402728 aaactctttgtattgatggaaatagaatattac-aaatgagtgaaagttacccactaatggggtggttacaaactatttatactaaaatctactaagact 36402826  T
Q  428 aatatg 433  Q
    ||||||    
T  36402827 aatatg 36402832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0525 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: scaffold0525
Description:

Target: scaffold0525; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 288 - 606
Target Start/End: Original strand, 2028 - 2349
Alignment:
Q  288 tgttaggaaatatggcatccatgaaagaaag---agaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaagttccctcta 384  Q
    |||| ||||| |||||||||||| ||| |||   ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2028 tgttgggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgagaaaagttccctcta 2127  T
Q  385 atggggtggttacaagttatttatactactctctactaggattaatatgctactaatctatatctctaatagtccccctcaagttggaaggtgtac-aaa 483  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||| | |||    
T  2128 atggggtggttacaagttatttatactactctctactaggactaatatgctattaatctatatctctaatagtccccctcaagttagaaggtgttcaaaa 2227  T
Q  484 acacttccaacttgaaatgaaaaaatacaaggaaagatgccggaaatacattggccaagaacatagcaacaatcaaatgcttattccaacaagaggaaac 583  Q
    |||||||||||||||||||| ||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2228 acacttccaacttgaaatgagaaagtacaaggaaagatgttggaaatacattggccaagaacatagcaacaatcaaatgctta-tccaacaagaggaaac 2326  T
Q  584 cacaactcaaggtgtaaccactt 606  Q
    ||||||||||||||||| |||||    
T  2327 cacaactcaaggtgtaatcactt 2349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 138; Significance: 9e-72; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 287 - 455
Target Start/End: Original strand, 18705707 - 18705878
Alignment:
Q  287 atgttaggaaatatggcatccatgaaagaaag---agaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaagttccctct 383  Q
    ||||||| ||| |||||||||||||||| |||   |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  18705707 atgttagaaaacatggcatccatgaaaggaaggagagaaaactaagaaactctttctattgatgaaaatagaatattacaaaatgagaaaagttccctct 18705806  T
Q  384 aatggggtggttacaagttatttatactactctctactaggattaatatgctactaatctatatctctaata 455  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  18705807 aatggggtggttacaagttatttatactactctctactaggactaatatgctactaatctatatctctaata 18705878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 437 - 518
Target Start/End: Original strand, 9905943 - 9906024
Alignment:
Q  437 ctaatctatatctctaatagtccccctcaagttggaaggtgtacaaaacacttccaacttgaaatgaaaaaatacaaggaaa 518  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  9905943 ctaaactatatctctaatagtccccctcaagttggaaggtgttcaaaacacttccaacttgaaatgagaaaatacaaggaaa 9906024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 508 - 606
Target Start/End: Original strand, 9906043 - 9906140
Alignment:
Q  508 atacaaggaaagatgccggaaatacattggccaagaacatagcaacaatcaaatgcttattccaacaagaggaaaccacaactcaaggtgtaaccactt 606  Q
    |||||| |||||||| ||| ||||||| ||||||||  |||||||||| ||||||| ||| |||||||||||||||||||||||||||||||| |||||    
T  9906043 atacaatgaaagatgtcgggaatacatcggccaagagaatagcaacaaccaaatgcctat-ccaacaagaggaaaccacaactcaaggtgtaatcactt 9906140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 382 - 455
Target Start/End: Complemental strand, 12436259 - 12436186
Alignment:
Q  382 ctaatggggtggttacaagttatttatactactctctactaggattaatatgctactaatctatatctctaata 455  Q
    |||||||||||||||| || ||||||||||||| | |||||| | |||||||| ||||||||||||||| ||||    
T  12436259 ctaatggggtggttactagctatttatactactatttactagaactaatatgccactaatctatatctccaata 12436186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 382 - 447
Target Start/End: Original strand, 35267574 - 35267639
Alignment:
Q  382 ctaatggggtggttacaagttatttatactactctctactaggattaatatgctactaatctatat 447  Q
    |||||||||| |||||||||||||||||||| |  |||||||||||||| ||  ||| ||||||||    
T  35267574 ctaatggggttgttacaagttatttatactaatgcctactaggattaatgtgtcactcatctatat 35267639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 164
Target Start/End: Original strand, 28249026 - 28249079
Alignment:
Q  111 caatttgaagatagttgaaaccaaccttatatatgcatttatggagagatggca 164  Q
    |||| |||||||  |||| ||||||||||||||||||||| ||||||| |||||    
T  28249026 caatctgaagatgattgacaccaaccttatatatgcatttgtggagaggtggca 28249079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 129; Significance: 2e-66; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 288 - 455
Target Start/End: Original strand, 30689634 - 30689804
Alignment:
Q  288 tgttaggaaatatggcatccatgaaagaaa---gagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaagttccctcta 384  Q
    |||||||||| |||||||||||||||| ||   ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||    
T  30689634 tgttaggaaacatggcatccatgaaaggaatgagagaaaactaagaaactctttctattgatgaaagtgaaatattacaaaatgagaaaagtaccctcta 30689733  T
Q  385 atggggtggttacaagttatttatactactctctactaggattaatatgctactaatctatatctctaata 455  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  30689734 atggggtggttacaaattatttatactactctctactaggactaatatgctactaatctatatctctaata 30689804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 287 - 455
Target Start/End: Original strand, 8655826 - 8655991
Alignment:
Q  287 atgttaggaaatatggcatccat-gaaagaa--agagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaagttccctct 383  Q
    ||||||||||| ||||||||||| ||| |||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  8655826 atgttaggaaacatggcatccatagaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgagaaaagttccctct 8655925  T
Q  384 aatggggtggttacaagttatttatactactctctactaggattaatatgctactaatctatatctctaata 455  Q
    |||||||||||||||||||||||||||||||||||||      |||||||||| ||||||||||||||||||    
T  8655926 aatggggtggttacaagttatttatactactctctac------taatatgctattaatctatatctctaata 8655991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 445 - 534
Target Start/End: Original strand, 6823176 - 6823266
Alignment:
Q  445 tatctctaatagtccccctcaagttggaaggtgtacaaaa-cacttccaacttgaaatgaaaaaatacaaggaaagatgccggaaatacat 534  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  6823176 tatctctaatagtccccctcaagttggaaggtgttcaaaaacacttccaacttgaaatgagaaaatacaaggaaagatgccggaaacacat 6823266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 443 - 518
Target Start/End: Original strand, 14618884 - 14618959
Alignment:
Q  443 tatatctctaatagtccccctcaagttggaaggtgtacaaaacacttccaacttgaaatgaaaaaatacaaggaaa 518  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||| |||||    
T  14618884 tatatctctaatagtccccctcaagttggaaggtgttcaaaacacttccaacatgaaatgagaaaatacagggaaa 14618959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 287 - 374
Target Start/End: Original strand, 6825507 - 6825597
Alignment:
Q  287 atgttaggaaatatggcatccatgaaagaaag---agaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaa 374  Q
    ||||||||||| |||||||||||| ||| |||   | ||| |||| ||||||||| |||||||  ||||||||||||||||||||||||||    
T  6825507 atgttaggaaacatggcatccatggaaggaaggagataaatctaacaaactctttgtattgatagaaatggaatattacaaaatgagaaaa 6825597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 287 - 365
Target Start/End: Complemental strand, 24249859 - 24249778
Alignment:
Q  287 atgttaggaaatatggcatccatg-aaagaa--agagaaaactaagaaactctttctattgatgaaaatggaatattacaaa 365  Q
    ||||||||||| |||||||| ||| ||||||  |||||||||||| ||||||||| |||| ||| |||||||||||||||||    
T  24249859 atgttaggaaacatggcatcaatgtaaagaatgagagaaaactaacaaactctttgtattaatggaaatggaatattacaaa 24249778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 443 - 478
Target Start/End: Complemental strand, 29427332 - 29427297
Alignment:
Q  443 tatatctctaatagtccccctcaagttggaaggtgt 478  Q
    ||||||||||||||||||||||||||||||||||||    
T  29427332 tatatctctaatagtccccctcaagttggaaggtgt 29427297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 325 - 374
Target Start/End: Original strand, 6823075 - 6823124
Alignment:
Q  325 ctaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaa 374  Q
    |||| ||||||||| |||||||  ||||||||||||||||||||||||||    
T  6823075 ctaacaaactctttgtattgatagaaatggaatattacaaaatgagaaaa 6823124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 119; Significance: 2e-60; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 288 - 457
Target Start/End: Complemental strand, 2547158 - 2546986
Alignment:
Q  288 tgttaggaaatatggcatccatgaaagaaag---agaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaagttccctcta 384  Q
    |||||||||| ||| |||||||| ||| |||   ||||| |||| ||||||||| |||||||  ||||||||||||||||||||||||||||||||||||    
T  2547158 tgttaggaaacatgacatccatggaaggaaggagagaaatctaacaaactctttgtattgatagaaatggaatattacaaaatgagaaaagttccctcta 2547059  T
Q  385 atggggtggttacaagttatttatactactctctactaggattaatatgctactaatctatatctctaatagt 457  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2547058 atggggtggttacaagttatttatactactctctactaggactaatatgctactaatctatatctctaatagt 2546986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 603 - 704
Target Start/End: Original strand, 35933240 - 35933341
Alignment:
Q  603 acttcttaaattaaactaggtatttattcaattgttcaataggttttgaataggaaccaggaagaacaaacctgatgaacatctccaacaaaatgtgaca 702  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35933240 acttcttaaattaaactaggtatttattcaattgttcatttggttttgaataggaaccaggaagaacaaacctgatgaacatctccaacaaaatgtgaca 35933339  T
Q  703 ag 704  Q
    ||    
T  35933340 ag 35933341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 288 - 520
Target Start/End: Complemental strand, 5444859 - 5444623
Alignment:
Q  288 tgttaggaaatatggcatccatg-aaagaaagag---aaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaag-ttccctc 382  Q
    |||||||||| |||||||| ||| |||||| |||   |||||||| ||||||||| |||||||  |||||||||||||| |||||| || || | || ||    
T  5444859 tgttaggaaacatggcatctatggaaagaaggagggaaaaactaacaaactctttgtattgattgaaatggaatattac-aaatgataagagataccttc 5444761  T
Q  383 taatggggtggttacaagttatttatactact-ctctactaggattaa-tatgctactaatctatatctctaatagtccccctcaagttggaaggtgtac 480  Q
    ||||| |||||||||||  ||| ||||||||| ||  ||||  | ||| ||  || ||||  |||||||||||||||||||||||||||||||||||| |    
T  5444760 taatgaggtggttacaa-ctatatatactactacttaactaatactaactaatct-ctaacatatatctctaatagtccccctcaagttggaaggtgttc 5444663  T
Q  481 aaaacacttccaacttgaaatgaaaaaatacaaggaaaga 520  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  5444662 aaaacacttccaacttgaaatgagaaaatacaaggaaaga 5444623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 505 - 597
Target Start/End: Complemental strand, 5444609 - 5444518
Alignment:
Q  505 aaaatacaaggaaagatgccggaaatacattggccaagaacatagcaacaatcaaatgcttattccaacaagaggaaaccacaactcaaggtg 597  Q
    |||||||||| ||||||||||||||||||| |||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  5444609 aaaatacaagtaaagatgccggaaatacatcggccaagagcatagcaacaaccaaatgctta-tccaacaagaggaaaccacaactcaaggtg 5444518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 505 - 602
Target Start/End: Complemental strand, 11815033 - 11814937
Alignment:
Q  505 aaaatacaaggaaagatgccggaaatacattggccaagaacatagcaacaatcaaatgcttattccaacaagaggaaaccacaactcaaggtgtaacc 602  Q
    |||||||||| | ||||||||||| |  || |||||||| ||||||||||| |||||||||| |||||| |||||||||||||||||||||| |||||    
T  11815033 aaaatacaagtagagatgccggaagtttatcggccaagagcatagcaacaaccaaatgctta-tccaaccagaggaaaccacaactcaaggtttaacc 11814937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 377 - 423
Target Start/End: Original strand, 20880131 - 20880177
Alignment:
Q  377 tccctctaatggggtggttacaagttatttatactactctctactag 423  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||    
T  20880131 tcccactaatggggtggttacaagttatttatactactgtctactag 20880177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 442 - 497
Target Start/End: Complemental strand, 11815122 - 11815067
Alignment:
Q  442 ctatatctctaatagtccccctcaagttggaaggtgtacaaaacacttccaacttg 497  Q
    ||||||||||||||||| ||| |||||||||||||||  | |||||||||||||||    
T  11815122 ctatatctctaatagtctcccgcaagttggaaggtgtttacaacacttccaacttg 11815067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 288 - 365
Target Start/End: Complemental strand, 35783859 - 35783779
Alignment:
Q  288 tgttaggaaatatggcatccatg-aaagaaagag--aaaactaagaaactctttctattgatgaaaatggaatattacaaa 365  Q
    ||||| |||| |||||||||||| |||||| |||  |||||||| ||||||||| |||||||  |||||||||||||||||    
T  35783859 tgttaagaaacatggcatccatggaaagaaggaggaaaaactaacaaactctttgtattgattgaaatggaatattacaaa 35783779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 382 - 455
Target Start/End: Complemental strand, 20880035 - 20879962
Alignment:
Q  382 ctaatggggtggttacaagttatttatactactctctactaggattaatatgctactaatctatatctctaata 455  Q
    |||||| |||||||| ||||||||||||||| | ||||||||   |||| | | |||||||||||| |||||||    
T  20880035 ctaatgaggtggttataagttatttatactaatgtctactagagctaatgtaccactaatctatatttctaata 20879962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 117; Significance: 3e-59; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 288 - 455
Target Start/End: Original strand, 111544 - 111714
Alignment:
Q  288 tgttaggaaatatggcatccatgaaagaaag---agaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaagttccctcta 384  Q
    |||||||||| |||||||||||| ||| |||   |||||  ||| ||||||||| |||||||  ||||||||||||||||||||||||||||||||||||    
T  111544 tgttaggaaacatggcatccatggaaggaaggagagaaatttaataaactctttttattgatttaaatggaatattacaaaatgagaaaagttccctcta 111643  T
Q  385 atggggtggttacaagttatttatactactctctactaggattaatatgctactaatctatatctctaata 455  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  111644 atggggtggttacaagttatttatactactctctactaggactaatatgctactaatctatatctctaata 111714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 109; Significance: 2e-54; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 319 - 455
Target Start/End: Complemental strand, 4719 - 4583
Alignment:
Q  319 agaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaagttccctctaatggggtggttacaagttatttatactactctct 418  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||| |||||||||||| ||||||||||||||||||    
T  4719 agaaaactaagaaactctttctattgatgaaaatgaaatattacaaaatggaaaaagttccctctaatagggtggttacaaattatttatactactctct 4620  T
Q  419 actaggattaatatgctactaatctatatctctaata 455  Q
    ||||||| ||||||||||||||||||||| |||||||    
T  4619 actaggactaatatgctactaatctatatatctaata 4583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0655 (Bit Score: 102; Significance: 3e-50; HSPs: 2)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 333 - 497
Target Start/End: Complemental strand, 734 - 570
Alignment:
Q  333 ctctttctattgatgaaaatggaatattacaaaatgagaaaagtt-ccctctaatggggtggttacaagttatttatactactctctactaggattaata 431  Q
    |||||| |||||||| |||| |||||||| ||||||||  ||||  |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  734 ctctttgtattgatggaaattgaatatta-aaaatgagtgaagtcaccctctaatggggtggatacaagttatttatactactctctactaggattaata 636  T
Q  432 tgctactaatctatatctctaatagtccccctcaagttggaaggtgtacaaaacacttccaacttg 497  Q
    ||  ||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||    
T  635 tggcactaatctatatctctaatagtcccccgcaagttggaaggtgttcacaacacttccaacttg 570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0655; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 505 - 555
Target Start/End: Complemental strand, 536 - 486
Alignment:
Q  505 aaaatacaaggaaagatgccggaaatacattggccaagaacatagcaacaa 555  Q
    |||||||||||| ||||||||||||||||| ||||||||  ||||||||||    
T  536 aaaatacaaggagagatgccggaaatacatcggccaagagaatagcaacaa 486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 443 - 596
Target Start/End: Complemental strand, 4607417 - 4607264
Alignment:
Q  443 tatatctctaatagtccccctcaagttggaaggtgtacaaaacacttccaacttgaaatgaaaaaatacaaggaaagatgccggaaatacattggccaag 542  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||| || |||| ||| ||     
T  4607417 tatatctcaaatagtccccctcaagttggaaggtgttcaaaacacttccaacttgaaatgagaaaatacaaggaaagatgtcgggaacacatcggctaaa 4607318  T
Q  543 aacatag-caacaatcaaatgcttattccaacaagaggaaaccacaactcaaggt 596  Q
    |||| || || ||| ||| |||||| |||||||||| | ||||||||||||||||    
T  4607317 aacaaagtcatcaaacaagtgctta-tccaacaagaagcaaccacaactcaaggt 4607264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 378 - 497
Target Start/End: Original strand, 8504296 - 8504417
Alignment:
Q  378 ccctctaatggggtggttacaagttatttatactactctctactaggattaatatgctactaatc--tatatctctaatagtccccctcaagttggaagg 475  Q
    |||||||||  ||| |||||||||||||||||||||||| |||||||| |||||||| |||||||  |||||||||||||||||||| ||||||||||||    
T  8504296 ccctctaatttggttgttacaagttatttatactactctttactaggactaatatgccactaatctatatatctctaatagtcccccgcaagttggaagg 8504395  T
Q  476 tgtacaaaacacttccaacttg 497  Q
    ||| || ||||||| |||||||    
T  8504396 tgttcacaacactttcaacttg 8504417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 288 - 455
Target Start/End: Original strand, 10018777 - 10018948
Alignment:
Q  288 tgttaggaaatatggcatccatg-aaagaa--agagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaa-aagttccc-tc 382  Q
    |||||||||| |||||||||||| ||||||  |||||||||||| ||||||||| |||||||| ||||| ||||||||||| ||||   ||||  || ||    
T  10018777 tgttaggaaacatggcatccatggaaagaaggagagaaaactaacaaactctttgtattgatggaaatgaaatattacaaa-tgagtggaagtaaccatc 10018875  T
Q  383 taatggggtggttacaagttatttatactactctctactaggattaatatgctactaatctatatctctaata 455  Q
    ||||  |||| |||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||    
T  10018876 taataaggtgattacaagttatttatactactctctactagaactaatatgccactaatctatatctctaata 10018948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 288 - 455
Target Start/End: Original strand, 10256091 - 10256262
Alignment:
Q  288 tgttaggaaatatggcatccatg-aaagaa--agagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaa-aagttccc-tc 382  Q
    |||||||||| |||||||||||| ||||||  |||||||||||| ||||| ||| |||||||| ||||| ||||||||||| ||||   ||||  || ||    
T  10256091 tgttaggaaacatggcatccatggaaagaaggagagaaaactaacaaactttttgtattgatggaaatgaaatattacaaa-tgagtggaagtaaccatc 10256189  T
Q  383 taatggggtggttacaagttatttatactactctctactaggattaatatgctactaatctatatctctaata 455  Q
    ||||  ||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||    
T  10256190 taataaggtggttacaagttatttatactactctctactagaactaatatgccactaatctatatctctaata 10256262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 288 - 455
Target Start/End: Original strand, 10179974 - 10180145
Alignment:
Q  288 tgttaggaaatatggcatccatgaaa-gaa--agagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgaga-aaagtt-ccctc 382  Q
    |||||||||| ||| ||||||||||| |||  |||||||||||| ||||||||| |||||||| ||||| ||||||||||| ||||  |||||  |||||    
T  10179974 tgttaggaaacatgacatccatgaaaagaaggagagaaaactaacaaactctttgtattgatggaaatgaaatattacaaa-tgagtgaaagtaaccctc 10180072  T
Q  383 taatggggtggttacaagttatttatactactctctactaggattaatatgctactaatctatatctctaata 455  Q
    |||| || || |||||||||||||||| ||||||||||||  | |||||||| ||||||||||||||||||||    
T  10180073 taataggatgattacaagttatttatattactctctactacaactaatatgccactaatctatatctctaata 10180145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 443 - 518
Target Start/End: Original strand, 42656345 - 42656420
Alignment:
Q  443 tatatctctaatagtccccctcaagttggaaggtgtacaaaacacttccaacttgaaatgaaaaaatacaaggaaa 518  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||    
T  42656345 tatatctctaatagtccccctcaagttggaaggtgttcaaaacacttccaacttgaaatgagaaaatacacggaaa 42656420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 288 - 421
Target Start/End: Original strand, 10123317 - 10123454
Alignment:
Q  288 tgttaggaaatatggcatccatgaaa-gaa--agagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgag-aaaagt-tccctc 382  Q
    |||||||||| ||||||||||||||| |||  |||||||||||| ||||||||| |||||||| ||||| |||||||| |||||||   ||||  |||||    
T  10123317 tgttaggaaacatggcatccatgaaaagaaggagagaaaactaacaaactctttgtattgatggaaatgaaatattac-aaatgagtggaagtaaccctc 10123415  T
Q  383 taatggggtggttacaagttatttatactactctctact 421  Q
    ||||  |||||||||||||||||||||||||| ||||||    
T  10123416 taataaggtggttacaagttatttatactactttctact 10123454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 288 - 399
Target Start/End: Original strand, 10661756 - 10661871
Alignment:
Q  288 tgttaggaaatatggcatccatg-aaagaa--agagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgag-aaaagt-tccctc 382  Q
    |||||||||| ||| |||||||| ||||||  |||||||||||| ||||||||| || |   |||||||||||||||| |||||||  ||||| |||| |    
T  10661756 tgttaggaaacatgacatccatggaaagaatgagagaaaactaacaaactctttgtagtatggaaaatggaatattac-aaatgagtgaaagtatcccac 10661854  T
Q  383 taatggggtggttacaa 399  Q
    |||||||||||||||||    
T  10661855 taatggggtggttacaa 10661871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 288 - 399
Target Start/End: Original strand, 782838 - 782954
Alignment:
Q  288 tgttaggaaatatggcatccatgaaagaaag---agaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgag--aaaagt-tccct 381  Q
    |||||||||| ||| |||||||| ||| |||   ||||| |||| ||||||||| |||||||  |||||||||||||| |||||||  |||||| ||||     
T  782838 tgttaggaaacatgacatccatggaaggaaggagagaaatctaacaaactctttgtattgatagaaatggaatattac-aaatgagtaaaaagtgtccca 782936  T
Q  382 ctaatggggtggttacaa 399  Q
    || |||||||||||||||    
T  782937 cttatggggtggttacaa 782954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 317 - 399
Target Start/End: Original strand, 10511058 - 10511141
Alignment:
Q  317 agagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatga-gaaaagt-tccctctaatggggtggttacaa 399  Q
    |||||||||||| ||||||||| ||||   |||||||||||||||| |||||| | ||||| |||| ||||||||||||||||||    
T  10511058 agagaaaactaacaaactctttgtattatggaaaatggaatattac-aaatgagggaaagtatcccactaatggggtggttacaa 10511141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 71; Significance: 9e-32; HSPs: 3)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 445 - 534
Target Start/End: Original strand, 144802 - 144892
Alignment:
Q  445 tatctctaatagtccccctcaagttggaaggtgtacaaaa-cacttccaacttgaaatgaaaaaatacaaggaaagatgccggaaatacat 534  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  144802 tatctctaatagtccccctcaagttggaaggtgttcaaaaacacttccaacttgaaatgagaaaatacaaggaaagatgccggaaacacat 144892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 288 - 374
Target Start/End: Original strand, 144661 - 144750
Alignment:
Q  288 tgttaggaaatatggcatccatgaaagaaag---agaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaa 374  Q
    |||||||||| |||||||| ||| ||| |||   | ||| |||| ||||||||| |||||||  ||||||||||||||||||||||||||    
T  144661 tgttaggaaacatggcatctatggaaggaaggagataaatctaacaaactctttatattgatagaaatggaatattacaaaatgagaaaa 144750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 287 - 374
Target Start/End: Original strand, 146719 - 146809
Alignment:
Q  287 atgttaggaaatatggcatccat-gaaagaaagagaaaa--ctaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaa 374  Q
    ||||||||||| |||||||| || ||| ||| |||| ||  |||| ||||||||| |||||||  ||||||||||||||||||||||||||    
T  146719 atgttaggaaacatggcatctatagaaggaaggagataaatctaacaaactctttatattgatagaaatggaatattacaaaatgagaaaa 146809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 505 - 592
Target Start/End: Complemental strand, 22809 - 22723
Alignment:
Q  505 aaaatacaaggaaagatgccggaaatacattggccaagaacatagcaacaatcaaatgcttattccaacaagaggaaaccacaactca 592  Q
    ||||||||||| |||||||||||||||||| |||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||    
T  22809 aaaatacaaggtaagatgccggaaatacatcggccaagagcatagcaacaaccaaatgctta-tccaacaagaggaaaccacaactca 22723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 443 - 518
Target Start/End: Complemental strand, 22900 - 22825
Alignment:
Q  443 tatatctctaatagtccccctcaagttggaaggtgtacaaaacacttccaacttgaaatgaaaaaatacaaggaaa 518  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||| ||||||||||||||    
T  22900 tatatctctaatagtccccctcatgttggaaggtgttcaaaacacttccaatttgaaatgagaaaatacaaggaaa 22825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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