View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11555_high_2 (Length: 597)
Name: NF11555_high_2
Description: NF11555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11555_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 511; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 48 - 579
Target Start/End: Complemental strand, 39976079 - 39975548
Alignment:
| Q |
48 |
ggtgttttgtttgtatgcacacataggacattgttggatcctgttttcttaagcacatcattagcaaagccattaactgcagtaacatatagtttaagca |
147 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39976079 |
ggtgttttgtttgtatgcacacataggacattgttggatcctgttttcttaagcacatcattagcaaagccattaactgcagtaacatatagtttaagca |
39975980 |
T |
|
| Q |
148 |
aagtttctgagttcatagcaccaataaaaacagtgagattaacaagagacagaaaacaagatggtgaaacaatgcaaaagttactaagagaaggtgattt |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39975979 |
aagtttctgagttcatagcaccaataaaaacagtgagattaacaagagacagaaaacaagatggtgaaacaatgcaaaagttactaagagaaggtgattt |
39975880 |
T |
|
| Q |
248 |
agttgtttgtcctgaaggaacaacatgtagagaaccatatttgttaaggtttagttcattgtttgctgagttggctaatgagatagtgcctgtggcaatg |
347 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39975879 |
agttgtttgtcctgaaggaacaacatgtagagaaccatatttgttaaggtttagttcattgtttgctgagttggctaatgagatagtgcctgtggcaatg |
39975780 |
T |
|
| Q |
348 |
aatactcatgtcagcatgttttatgggaccacagcaagcggattgaagtgtttggatcctannnnnnncttgatgaatcctaagccaagttatcatattc |
447 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
39975779 |
aatactcatgtcagcatgttttatgggaccacagcaagcggattgaagtgtttggatcctatttttttcttgatgaatcctaagccaagttatcatattc |
39975680 |
T |
|
| Q |
448 |
aaattcttgggaaggtacctaaagaacttacatgtgctggaggaaagtcaagtgttgaagtggctaattatatacagaaacaattgggtgatgctttgag |
547 |
Q |
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| T |
39975679 |
aaattcttgggaaggtacctaaagaacttacatgtgctggaggaaagtcaagtgttgaagtggctaattatatacagaaacaattgggtgatgctttgag |
39975580 |
T |
|
| Q |
548 |
gtttgagtgtacaaattttactaggagggata |
579 |
Q |
| |
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| T |
39975579 |
gtttgagtgtacaaattttactaggagggata |
39975548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 317
Target Start/End: Complemental strand, 25552961 - 25552899
Alignment:
| Q |
255 |
tgtcctgaaggaacaacatgtagagaaccatatttgttaaggtttagttcattgtttgctgag |
317 |
Q |
| |
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||||| ||||||||||| ||||||||||| || ||| ||||||||||| | |||||||||||| |
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| T |
25552961 |
tgtccagaaggaacaacttgtagagaaccttacttgctaaggtttagtcctttgtttgctgag |
25552899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 114; Significance: 2e-57; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 181 - 579
Target Start/End: Complemental strand, 16147724 - 16147326
Alignment:
| Q |
181 |
tgagattaacaagagacagaaaacaagatggtgaaacaatgcaaaagttactaagagaaggtgatttagttgtttgtcctgaaggaacaacatgtagaga |
280 |
Q |
| |
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|||| |||||||| || ||| |||||||| | ||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||| ||||| || |
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| T |
16147724 |
tgagtttaacaagggatagagaacaagatagggaaacaatgcaaaggttgttaagtgaaggtgatttagttgtttgtcctgaaggaacaacttgtaggga |
16147625 |
T |
|
| Q |
281 |
accatatttgttaaggtttagttcattgtttgctgagttggctaatgagatagtgcctgtggcaatgaatactcatgtcagcatgttttatgggaccaca |
380 |
Q |
| |
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||| ||||| ||||||||||||||| | |||||||| | ||| ||||||| || || ||||| |||||| | |||| || ||||||||||| || ||| |
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| T |
16147624 |
accttatttattaaggtttagttcactttttgctgaacttgctgatgagattgttccagtggctatgaatgttaatgtgagtatgttttatggtacaaca |
16147525 |
T |
|
| Q |
381 |
gcaagcggattgaagtgtttggatcctannnnnnncttgatgaatcctaagccaagttatcatattcaaattcttgggaaggtacctaaagaacttacat |
480 |
Q |
| |
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|| || ||||| || |||||||| || ||||||||||| ||| |||||| ||||| || | |||| |||||||| |||||||| || | |
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| T |
16147524 |
gctagtggattaaaatgtttggactcttttctatttttgatgaatccatggcctagttataatattgaagtacttgaaaaggtaccaaaagaactcactt |
16147425 |
T |
|
| Q |
481 |
gtgctggaggaaagtcaagtgttgaagtggctaattatatacagaaacaattgggtgatgctttgaggtttgagtgtacaaattttactaggagggata |
579 |
Q |
| |
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||||||| ||||| || | |||||||||||||||||||||| | | | |||||||||||||| ||||||||||||||||| |||| |||||||||| |
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| T |
16147424 |
gtgctggtggaaaatctccttttgaagtggctaattatatacaaagagagttgggtgatgctttagggtttgagtgtacaaatattacaaggagggata |
16147326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 189 - 579
Target Start/End: Original strand, 16195219 - 16195609
Alignment:
| Q |
189 |
acaagagacagaaaacaagatggtgaaacaatgcaaaagttactaagagaaggtgatttagttgtttgtcctgaaggaacaacatgtagagaaccatatt |
288 |
Q |
| |
|
|||||||||||| |||||||| | ||||||||||||| ||| || || ||||||||||||||||| || |||||||||||||| ||||| ||||| |||| |
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| T |
16195219 |
acaagagacagagaacaagatagggaaacaatgcaaaggttgcttagggaaggtgatttagttgtgtgccctgaaggaacaacttgtagggaaccttatt |
16195318 |
T |
|
| Q |
289 |
tgttaaggtttagttcattgtttgctgagttggctaatgagatagtgcctgtggcaatgaatactcatgtcagcatgttttatgggaccacagcaagcgg |
388 |
Q |
| |
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| ||||||||||||||| | |||||||| | ||| ||||||| || || ||||| |||||| | |||| || ||||||||||| || ||||| || || |
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| T |
16195319 |
tattaaggtttagttcactttttgctgaaattgctgatgagattgttccagtggctatgaatgataatgtgagtatgttttatggtacaacagctagtgg |
16195418 |
T |
|
| Q |
389 |
attgaagtgtttggatcctannnnnnncttgatgaatcctaagccaagttatcatattcaaattcttgggaaggtacctaaagaacttacatgtgctgga |
488 |
Q |
| |
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||| || |||||||| ||| ||||||||||| |||||||||| | ||| |||| |||| || || || |||||||| || |||||||| |
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| T |
16195419 |
attaaaatgtttggacccttttctatttttgatgaatccatggccaagttataacattgaaatgcttgataaagttccaaaagaactcacttgtgctggt |
16195518 |
T |
|
| Q |
489 |
ggaaagtcaagtgttgaagtggctaattatatacagaaacaattgggtgatgctttgaggtttgagtgtacaaattttactaggagggata |
579 |
Q |
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|||||||| | ||||||||||| |||||||||||||| ||||| ||||||||||| | |||||||| || ||| |||| |||||||||| |
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| T |
16195519 |
ggaaagtctccttttgaagtggctgattatatacagaaagaattgagtgatgctttgggatttgagtgcaccaatattacaaggagggata |
16195609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 226
Target Start/End: Original strand, 50133656 - 50133706
Alignment:
| Q |
176 |
aacagtgagattaacaagagacagaaaacaagatggtgaaacaatgcaaaa |
226 |
Q |
| |
|
|||||||||||||| ||| | ||||||| |||||||||||||||||||||| |
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|
| T |
50133656 |
aacagtgagattaataaggggcagaaaataagatggtgaaacaatgcaaaa |
50133706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 238 - 316
Target Start/End: Complemental strand, 38792363 - 38792285
Alignment:
| Q |
238 |
aaggtgatttagttgtttgtcctgaaggaacaacatgtagagaaccatatttgttaaggtttagttcattgtttgctga |
316 |
Q |
| |
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|||| ||| ||||||| ||||| ||||| || || ||||||||||| ||||| ||||||||||| || |||||| |||| |
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| T |
38792363 |
aaggggatgtagttgtgtgtccagaagggaccacttgtagagaaccttatttattaaggtttagctctttgttttctga |
38792285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 105
Target Start/End: Original strand, 28538603 - 28538651
Alignment:
| Q |
57 |
tttgtatgcacacataggacattgttggatcctgttttcttaagcacat |
105 |
Q |
| |
|
||||||||||||||||||||| | |||||||| |||||| ||||||||| |
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|
| T |
28538603 |
tttgtatgcacacataggacacttttggatccagttttcctaagcacat |
28538651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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